Cp4.1LG06g05650.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g05650.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transmembrane protein 56
Location	Cp4.1LG06 : 3472568 .. 3477582 (+)
Sequence length	1869

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAATTGATGTTGGACTGTCTTCGTGAAACTTGCTGATTACTGATGTTTATGGAGGATCGTCTTCGTGTTTTGATCTTCATGTTGTGTGTAAATTTGAATTCCACCTGTTTATTTCCCTCTTTGTACAATGTGATTGATTACTTTTGTTGCTGTCTTAGAGTTTATAAATTCATGTCTGACTGTCTTTGTGAAACTAGCTGATTGTGTTGATGTTTTTGGAAGATCTTCTTGTTTCAATTTTGGTGATTATTGTAAATTTGAATTCTACCTGTTGATTTCTTTCTTTCTTTAGCGTGGTTGATTGCTTTTTGTTGCTGTGTATGTTGGACTGCATTTGTGAATCTTTTTGATTGCTGTTGATGTTCCTGGAAGAATGATTTTGTAATTAGTGTAACGTAATTTCTACATACCGTGTTACTCTGAACTTAATTCACAGTTTGTGCTCGCTTGGTTTTATCTTTCAGTTCCTTTGTCATGTTGAACTCTATCTGTTGTGCTTAATCTGTGTTTCTTTTGTTTTTGTTTTTTAAATTCATTTACACATATTTTCAGTGTGATTGATTGCCTTTTGGTTTTTCCTCCTATATTAGGAGTTTAAATTAGACTGCCATTGTTAAACTTGCTGGTCACTGGTCCTTGGCGATCTTCTTTGCATTTCAATTTTCATGATAAGTGTAAGTGGAAATTTTACATCCTGTGGGACTCTGAAGCTAATTCACGATGTTTCTGTTTGGTAGTTTTTATCTTTCAGTTTCTTGGCTGAGGTTGTTATGTATTATTCATTGTGTAGAACTTCATTGAATTGCTGGCTTATGTTGGTTTAGGAGGTGCTCTGTACTATCAACCTGTGAACAATAAAATCTTCACATGTTTGTTTGCTTCACTTCAATGTTGATGGAGCTGATATGTTTGTGAACTAGCGATATTATAATTACAAAAGATGTCTTTGTGATTTGAACAACACCAAGAGGCCATATGCTGTACACTATAGAACAAAAGAAGCCTCTATATTCCGCTTGTTTTCAAATGAAAGCTTCAAAACGAGGCCTTAAACTTGATAAACCTATGGGTACCATTCCAATCATAATTCCTTAACTAGGATTCTGAGAGAACACTGCCACAATACCCTTGCCATCCATTTGGGTTACCTCTGTAGAGTGGTGAATGTGAATAATGCTCTTGTTTCTAAATCTGCCCATGATCTCTATTATTCTTCATTATGTTGATTAAGCTGTTTACCTATTCTTTTGAAGACAGATGTAAAGAGGAGGAGAAGTTAAAGAATTTGGATGAATTGGGCATCTTGTTGTTTCTTTTGAAACCATAGCATGCTGTAACCGAAGATTGAAACAAGCAATCATGTCACTTAAGTCGTATCAAAGCCAGGCTGAGCAACTACTTAAGTATCTTGTACTATCAGATCCTGTTGTACCATACATTTCCATTCCCGCAGGCATACTTGCTAGTAAATTGGTACCTCCCCGTCATTTATGGCTCTTTTATCTTGTTGAATGTGGGTCCCTTGCATTCGACTTTATCTTCAATTCAATCATCGTGGTGTTAACAGGTTGATAGTAATATGCTATTAAGTAGTTTCTCTTCTTTGTGTGAGTTTGCATGTCCTCCTCCTCCTCCTCTTCTTCTTTTTGCCTGTCATTTGTAAATCATCCTTTCGTTTCCAGGTCTATGACGTAACTGATTTGATCAGCGGTGTTTACTTCAAGAGTTATTCCAACCTTTCTAGGATTCAGCGGGTGGAGTGGAACAACCGGTAAATGATCATTCCCTTCTTTGTATTGGTTTATTTATTTTTCCTGGTAATATTATTTCGTTTGCTGTTTTTACAGGGCTATGTCAACTCTCCATGCCATTTTCATCACAGCAGCGTCATTGTACATGGTGTTTTTGTCAGATCTCTTTTCTGACCGATATTTTAGCCTTATTACCTTTCGTAGTTCAACAATATCTGCATTTGGCCTGGGTGTAAGTGCGAACTTTGTACTAAATTCATATATATGGCCAACTTTTCTGTTGTTGGACGGTCTGAAAATCAACTTTCATTTTATTTCTCACGTCCACCTATTTTAATTTTAAGCTCTGTTTTAGTTGCCAACGGTAACTCCCATCACCAACCATCATTTCCATAATAGACTTAAAATTTTGCCAATCTAAAACATAATAGACTTCAAATAGATTTAAATTTTGGTGATACTCCTGCAGGTGTCTGCCGGTTACTTCTTTACTGATTTGGGAATGATCTTGTGGTTTTATCCTGCACTTGGTGGAATGGAGTATGTAAGTGCGTTCTCCCTTTAAATATTGCTGGTTATTGTATATTCCTGTCATATTATCTTGTGTGTTCTTTTGGGTAAAACGGTTATGTGGGAAATTTGTTGTTTGTGGAAAATCATAATGTTGTCTTTTCAGGTGTTACATCATCTCCTTTCTCTCTTAGCTGTGGCCTATGCTATGTTGACTGGTGAGGGGCAACTTTACACCTACATGGTTCTCATCTCTGAAACGACTACACCTGGAATCAATTTGAGATGGTAGTTTTCTGTTTGTTCATATCTTTATCTTGTGTATAGCATTTCATCAGAATATGATCTAAAAGAAACAATTCCCTTCGCATAGGTACCTTGACACAGCTGGAATGAAGAAGTCAAAAGCATACCTCATAAATGGGGTTGTGATATTCTTCGCTTGGCTGGTGAGTATAAAATATCTGATTATTATATATGTATTTTGATTTTATATTTCTTTTCAATTGTGCTCCATGGAGAGTTGGGAACAAAGCAATTTAACTTGTATATTACATCAGGTTGCCAGAATTCTTCTGTTCATGTACATGTTTTACCATGTCTACTTCCACTTGAATCAGGTATCATCAATCTCACCTTTTATCAGTTGTTTGGAATAACTTTATAAATGCTTAAAAAGTGTTTTTAATTGCTAAAAATATATTTATATACTTAAAAAACTCAATCCAAACATACTTCATACTAATGGCAAAACATTAACAATCTGTTACTGGCCATATGATAACTTTGTCGCAGTACAAGTCTACAATTGTTTGAAAGAGACTCGTCAGCTTGCATGCATCATATGAACCATGTGCCATATACATATATTTGTTTCCTTCTTTACAAATCAATACAACATTTTTCTTTTATAAGAAAGAATTAATTTGATTGATTATATGAAATTTTAAAAAAATGAAAAAACATGGTAAATTACGAGCTTAATTTCCAAACTTTTTAGATTGGTGTGAAAATGTCCTTTAAGCTTTAAAATTATCTAATATGTCTCAAAACTTTCAATTTTATGTCTTATAGAATTTTATGTCTTATAGAACCTTGGAAGTATCTAATGAGTCCATAAACTTTCATTTTTATATTAATAAGTTGTTCAAACTTTTAGTTTTGTATTTAACCTTCTTTAAAATTCATGAACCTACTAGATAAAACATTGTAAGTTTAATGTCTTACCAAACAATTCTATTAGACACTTTTTAAGTTAAGAATCTATTAACAAAAGCTTGAATCTATTAACAAAAGCATGAAAGCTTAGGGGGAGATATTTTATCTCCTAAGTAAGAAAAAGTATAGATTTGTGAACATGAGATTAGTTTATCAGCTAAAGCATTCACTCATTTATTCGAGGTTGGAACTCCAAATCTCCACTAAATCTGTACTAAAAAAGAAAGTATAGATAGACTTGAGAAGGTTTTGGGGTGTCATTATTTATTTGGAAAATTTTATGATCTCTCTCAAATCAATTCAACAATTTTCAAATTTACCAACCCTTGGTTATGAAACATGGTAATGATTTTTGGATATGGTGTGGGGGAGAGTCCTTAATCATTACTTTTTGTAATTTTCAGTTTGGTATCATTCTTTTGGATCGATCTCCTTTCTTGTAGTTGAGGTCTCTCTCTTTTAGCTTGTTTTTGAAATTTTGATTTTTTTAAATTGTACTTTATTCTTTTCGCCACATAAAGTGTTTTAACAATTTCGATCTTTGGGGTCCCTCTTGTCAAGTTGGAGTTGGTAGTTGAGACTTTTTATTGTTAGTGGCATGCGACACCAATCATGTCTTTTGGGTGAATAATTCTGTGATCATAGCTGTGTGCCATTTAAATCATAGCCTCCATCCAGTCTGATGATTACTTCTAACTTTAAATTCTCATTATTTAATAATTTAACGCTAAAACTTATATTAAAGTTGTCAAAATATTATGACCATAGTTTATTTTCAATGATTTTTTGAAGAAATTGATGTATTTGTTCAATTTGGTAGAGAAAAATAAAGGGAAAAACTCATGTTCTGAAGTTTGTGTTAATGCATTTCCCTTAATCATACAGGTTCTCCAGATGCACGCTTTTGGGCAGCTTTTGGTTTTCGTGGTTCCATTGGTATTATCGGTCATGAACTGTATGTGGTTCGCGATAATATTCAAAGGATTGAAAAAGACATTGGCAAAGAGACAATGAAACAGAAAAACATCTGCTGCTATTTGGGCCAACGTTGTGAGATAAGGTAGTGTTTCAAAATTCTCTTCTTTCTTGCACCACTTGTACATGTTCAAGTTGCAAATCTGTACAATTTCATGTTAATTTTTAGTACATAGATAGCCATTCTAGATCGAAAAATAATGGGGAAAATTTTTTTTTAGCATTATTTAATGCATAATGAATGATTGTTTATTGTAGATTTACAGGATGGGATATTTGCAATCAATGCAAAATGCCTTTGCTGATATAATCTCTCTCTGGTTTGTTTCTGATTTAATTTCTCAAACTTATATATATTTGTGTCAATTTTGTTTAGTTCTTTCGATCTCGCGTCACTGTTTAATTCCTAAATTTTTAAGTGTCTAATAGGTTATTGAATTTTTAGTTGTGTCTAAGAAAGTTCTTTCGATTTTGCGTTAGTTCCTAAATTTTTAAGTGTCTAATAGGTTATTGAATTTTTAGTTGTGTCTAAGAAAGTTCTTTCGATTTTGCGTTACTA

mRNA sequence

AGAAATTGATGTTGGACTGTCTTCGTGAAACTTGCTGATTACTGATGTTTATGGAGGATCGTCTTCGTGTTTTGATCTTCATGTTGTGTGTAAATTTGAATTCCACCTGTTTATTTCCCTCTTTGTACAATGTGATTGATTACTTTTGTTGCTGTCTTAGAGTTTATAAATTCATGTCTGACTGTCTTTGTGAAACTAGCTGATTGTGTTGATGTTTTTGGAAGATCTTCTTGTTTCAATTTTGGTGATTATTGTAAATTTGAATTCTACCTGTTGATTTCTTTCTTTCTTTAGCGTGGTTGATTGCTTTTTGTTGCTGTGTATGTTGGACTGCATTTGTGAATCTTTTTGATTGCTGTTGATGTTCCTGGAAGAATGATTTTGTAATTAGTGTAACGTAATTTCTACATACCGTGTTACTCTGAACTTAATTCACAGTTTGTGCTCGCTTGGTTTTATCTTTCAGTTCCTTTGTCATGTTGAACTCTATCTGTTGTGCTTAATCTGTGTTTCTTTTGTTTTTGTTTTTTAAATTCATTTACACATATTTTCAGTGTGATTGATTGCCTTTTGGTTTTTCCTCCTATATTAGGAGTTTAAATTAGACTGCCATTGTTAAACTTGCTGGTCACTGGTCCTTGGCGATCTTCTTTGCATTTCAATTTTCATGATAAGTATGTAAAGAGGAGGAGAAGTTAAAGAATTTGGATGAATTGGGCATCTTGTTGTTTCTTTTGAAACCATAGCATGCTGTAACCGAAGATTGAAACAAGCAATCATGTCACTTAAGTCGTATCAAAGCCAGGCTGAGCAACTACTTAAGTATCTTGTACTATCAGATCCTGTTGTACCATACATTTCCATTCCCGCAGGCATACTTGCTAGTAAATTGGTTGATAGTAATATGCTATTAAGTAGTTTCTCTTCTTTGTGTGAGTTTGCATGTCCTCCTCCTCCTCCTCTTCTTCTTTTTGCCTGTCATTTGGCTATGTCAACTCTCCATGCCATTTTCATCACAGCAGCGTCATTGTACATGGTGTTTTTGTCAGATCTCTTTTCTGACCGATATTTTAGCCTTATTACCTTTCGTAGTTCAACAATATCTGCATTTGGCCTGGGTGTGTCTGCCGGTTACTTCTTTACTGATTTGGGAATGATCTTGTGGTTTTATCCTGCACTTGGTGGAATGGAGTATGTGTTACATCATCTCCTTTCTCTCTTAGCTGTGGCCTATGCTATGTTGACTGGTGAGGGGCAACTTTACACCTACATGGTTCTCATCTCTGAAACGACTACACCTGGAATCAATTTGAGATGGTACCTTGACACAGCTGGAATGAAGAAGTCAAAAGCATACCTCATAAATGGGGTTGTGATATTCTTCGCTTGGCTGGTTCTCCAGATGCACGCTTTTGGGCAGCTTTTGGTTTTCGTGGTTCCATTGGTATTATCGGTCATGAACTGTATGTGGTTCGCGATAATATTCAAAGGATTGAAAAAGACATTGGCAAAGAGACAATGAAACAGAAAAACATCTGCTGCTATTTGGGCCAACGTTGTGAGATAAGATTTACAGGATGGGATATTTGCAATCAATGCAAAATGCCTTTGCTGATATAATCTCTCTCTGGTTTGTTTCTGATTTAATTTCTCAAACTTATATATATTTGTGTCAATTTTGTTTAGTTCTTTCGATCTCGCGTCACTGTTTAATTCCTAAATTTTTAAGTGTCTAATAGGTTATTGAATTTTTAGTTGTGTCTAAGAAAGTTCTTTCGATTTTGCGTTAGTTCCTAAATTTTTAAGTGTCTAATAGGTTATTGAATTTTTAGTTGTGTCTAAGAAAGTTCTTTCGATTTTGCGTTACTA

Coding sequence (CDS)

ATGTCACTTAAGTCGTATCAAAGCCAGGCTGAGCAACTACTTAAGTATCTTGTACTATCAGATCCTGTTGTACCATACATTTCCATTCCCGCAGGCATACTTGCTAGTAAATTGGTTGATAGTAATATGCTATTAAGTAGTTTCTCTTCTTTGTGTGAGTTTGCATGTCCTCCTCCTCCTCCTCTTCTTCTTTTTGCCTGTCATTTGGCTATGTCAACTCTCCATGCCATTTTCATCACAGCAGCGTCATTGTACATGGTGTTTTTGTCAGATCTCTTTTCTGACCGATATTTTAGCCTTATTACCTTTCGTAGTTCAACAATATCTGCATTTGGCCTGGGTGTGTCTGCCGGTTACTTCTTTACTGATTTGGGAATGATCTTGTGGTTTTATCCTGCACTTGGTGGAATGGAGTATGTGTTACATCATCTCCTTTCTCTCTTAGCTGTGGCCTATGCTATGTTGACTGGTGAGGGGCAACTTTACACCTACATGGTTCTCATCTCTGAAACGACTACACCTGGAATCAATTTGAGATGGTACCTTGACACAGCTGGAATGAAGAAGTCAAAAGCATACCTCATAAATGGGGTTGTGATATTCTTCGCTTGGCTGGTTCTCCAGATGCACGCTTTTGGGCAGCTTTTGGTTTTCGTGGTTCCATTGGTATTATCGGTCATGAACTGTATGTGGTTCGCGATAATATTCAAAGGATTGAAAAAGACATTGGCAAAGAGACAATGA

Protein sequence

MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVDSNMLLSSFSSLCEFACPPPPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYFSLITFRSSTISAFGLGVSAGYFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVLQMHAFGQLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKRQ

Homology

[Close]

BLAST of Cp4.1LG06g05650.1 vs. TrEMBL
Match: A0A0A0L1M1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G614180 PE=4 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 1.7e-90
Identity = 187/249 (75.10%), Postives = 208/249 (83.53%), Query Frame = 1


Query: 5   SYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVD------SNMLLSSFSSLCEFACPP 64
           S +SQA +LLKYLVLSDPVVPYISIPAG+LASKLV       S++   S+S+L       
Sbjct: 2   SLKSQAGELLKYLVLSDPVVPYISIPAGVLASKLVYDLTDMISSVYFKSYSNLSRIQ--- 61

Query: 65  PPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYFSLITFRSSTISAFGLGVSAG 124
                +   + AMST+HAIFITAA+LYMVFLSDL+SD+YF  ITFR+STIS FGLGVS G
Sbjct: 62  ----RVEWNNRAMSTVHAIFITAAALYMVFLSDLYSDQYFGPITFRNSTISTFGLGVSVG 121

Query: 125 YFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 184
           YF TDL MILWFYPA+GGMEYV+HHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL
Sbjct: 122 YFITDLVMILWFYPAIGGMEYVIHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 181

Query: 185 RWYLDTAGMKKSKAYLINGVVIFFAWLVLQMHAFGQLLVFVVPLVLSVMNCMWFAIIFKG 244
           RWYLDTAGMKKSKAYLING+VIFFAWLVLQMH FGQ LVFVVP +L +MN  WF+ IF+G
Sbjct: 182 RWYLDTAGMKKSKAYLINGIVIFFAWLVLQMHVFGQFLVFVVPSILWIMNLTWFSKIFRG 241

Query: 245 LKKTLAKRQ 248
           LKKTLAKRQ
Sbjct: 242 LKKTLAKRQ 243

[Close]

BLAST of Cp4.1LG06g05650.1 vs. TrEMBL
Match: B9H849_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22760g PE=4 SV=1)

HSP 1 Score: 287.0 bits (733), Expect = 2.2e-74
Identity = 168/273 (61.54%), Postives = 195/273 (71.43%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLV-DSNMLLS-----SFSSLCEF 60
           M++KSYQ  AE LLK  +L+ P++PY SI  GI A K+V D   L S     S+S+L   
Sbjct: 1   MAMKSYQINAELLLKEYLLAGPLIPYTSITGGIFACKMVYDLTSLFSAVYFKSYSNLTNL 60

Query: 61  ACPPPPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDR-YFSLITFRSSTISAFGL 120
                    +   + A+ST HA+FIT  SLY VF SDLFSD+ +  L+TFRSS +S F L
Sbjct: 61  Q-------RIEWNNRAISTFHAVFITMMSLYFVFCSDLFSDQPHAGLVTFRSSALSTFAL 120

Query: 121 GVSAGYFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTT 180
           GVSAGYF  DLGMI+WFYP+LGGMEYV+HH LSL+AVAY+MLTGEGQLYTYMVLISETTT
Sbjct: 121 GVSAGYFIADLGMIIWFYPSLGGMEYVIHHSLSLIAVAYSMLTGEGQLYTYMVLISETTT 180

Query: 181 PGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVL--------------------QMHAFG 240
           PGINLRWYLDTAGMKKSKAYL+NGVVIFFAW V                     QMH+FG
Sbjct: 181 PGINLRWYLDTAGMKKSKAYLLNGVVIFFAWFVARILLFIYLFYHVFLHQYQVKQMHSFG 240

Query: 241 QLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKR 247
           +LL  VVP+VLSVMN MWF  IFKG+KKTLAKR
Sbjct: 241 RLLALVVPVVLSVMNLMWFWKIFKGMKKTLAKR 266

[Close]

BLAST of Cp4.1LG06g05650.1 vs. TrEMBL
Match: A0A0D2V1E3_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_012G039200 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.9e-74
Identity = 159/249 (63.86%), Postives = 190/249 (76.31%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVDSNMLLSSFSSLCEFACPPPP 60
           M +KSYQ+ AE L+K  +L+D  +PY SI  GI A K+V    L   FSS+   + P  P
Sbjct: 1   MGIKSYQNPAELLVKEYLLADSFIPYTSIICGICACKMVYD--LTQLFSSVYFKSYPSLP 60

Query: 61  PLLLFA-CHLAMSTLHAIFITAASLYMVFLSDLFSD-RYFSLITFRSSTISAFGLGVSAG 120
            +      + ++ST HA+FITA SLY VF S+L+SD +Y  ++TFRSS +S F LG S G
Sbjct: 61  KIQRTEWSNRSISTFHAMFITAMSLYFVFWSNLYSDNQYAGMVTFRSSALSTFSLGASVG 120

Query: 121 YFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 180
           YF  DLGMI+WFYP+LGGMEYVLHHLLSL AVAY+MLTGEGQLYT+MVLISETTTPGINL
Sbjct: 121 YFLADLGMIIWFYPSLGGMEYVLHHLLSLAAVAYSMLTGEGQLYTFMVLISETTTPGINL 180

Query: 181 RWYLDTAGMKKSKAYLINGVVIFFAWLVLQMHAFGQLLVFVVPLVLSVMNCMWFAIIFKG 240
           RWYLDT GMK+SKAYL+NGVVIF AW V QMH++G LL+FVVP VLSVMN  WF  I +G
Sbjct: 181 RWYLDTVGMKRSKAYLVNGVVIFVAWFVKQMHSYGLLLIFVVPSVLSVMNLFWFGKIIRG 240

Query: 241 LKKTLAKRQ 248
           L+KTLAKRQ
Sbjct: 241 LRKTLAKRQ 247

[Close]

BLAST of Cp4.1LG06g05650.1 vs. TrEMBL
Match: A0A151U271_CAJCA (Transmembrane protein 56 OS=Cajanus cajan GN=KK1_005948 PE=4 SV=1)

HSP 1 Score: 278.5 bits (711), Expect = 8.0e-72
Identity = 163/274 (59.49%), Postives = 195/274 (71.17%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLV-DSNMLLS-----SFSSLCEF 60
           M  KSYQ++A   +K  +L+DP++PY SI  GI A K+V D   L S     S+SSL   
Sbjct: 8   MKFKSYQNRANVFVKEYLLADPLIPYTSIVGGIFACKMVYDLTQLFSAVHFKSYSSLTRI 67

Query: 61  ACPPPPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYFS-LITFRSSTISAFGL 120
                    +   + AMST+HA+FIT  SLY+VF S+LFSD   S LITF+SS++S F L
Sbjct: 68  Q-------RVEWNNRAMSTIHALFITTMSLYLVFCSNLFSDNQSSELITFQSSSLSTFAL 127

Query: 121 GVSAGYFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTT 180
           GVS GYF  DLGMI+WF+P+LGG EYV+HHLLSL+AVA++ML+GEGQLYTYMVLISETTT
Sbjct: 128 GVSVGYFIADLGMIIWFFPSLGGYEYVIHHLLSLVAVAFSMLSGEGQLYTYMVLISETTT 187

Query: 181 PGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVL--------------------QMHAFG 240
           PGINLRWYLD AGMKK+KAYLINGVVIF AWLV                     QMH FG
Sbjct: 188 PGINLRWYLDAAGMKKTKAYLINGVVIFIAWLVARVLLFVYMFYHVYLHYDQVEQMHTFG 247

Query: 241 QLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKRQ 248
           Q+LV VVPLVLS+MN +WF+ I KGL+KTLAKRQ
Sbjct: 248 QVLVIVVPLVLSIMNLVWFSKIIKGLRKTLAKRQ 274

[Close]

BLAST of Cp4.1LG06g05650.1 vs. TrEMBL
Match: A0A0B2PW65_GLYSO (Transmembrane protein 56-B OS=Glycine soja GN=glysoja_019966 PE=4 SV=1)

HSP 1 Score: 277.3 bits (708), Expect = 1.8e-71
Identity = 165/274 (60.22%), Postives = 193/274 (70.44%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLV-DSNMLLS-----SFSSLCEF 60
           M  KSYQ++A   +K  +L+DP++PY SI  GI A K+V D   L S     S+SSL   
Sbjct: 8   MKFKSYQNRANLFVKEYLLADPLIPYTSIIGGIFACKMVYDLTQLFSTVHFKSYSSLTRI 67

Query: 61  ACPPPPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYFS-LITFRSSTISAFGL 120
                    +   + +MST+HAIFIT  SLY+VF S+L+SD   S LITFRSS+ S F L
Sbjct: 68  Q-------RVEWNNRSMSTIHAIFITTMSLYLVFCSNLYSDNQSSELITFRSSSSSTFAL 127

Query: 121 GVSAGYFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTT 180
           GVS GYF  DLGMI WF+P+LGG EYV+HHLLSL+AVA++ML+GEGQLYTYMVLISETTT
Sbjct: 128 GVSVGYFIADLGMIFWFFPSLGGYEYVIHHLLSLVAVAFSMLSGEGQLYTYMVLISETTT 187

Query: 181 PGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVL--------------------QMHAFG 240
           PGINLRWYLD AGMKKSKAYLINGVVIF AWLV                     QMHAFG
Sbjct: 188 PGINLRWYLDAAGMKKSKAYLINGVVIFIAWLVARILLFVYMFYHVYLHFDQIEQMHAFG 247

Query: 241 QLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKRQ 248
           Q+LV VVPL LSVMN +WF+ I KGL+KTLAKRQ
Sbjct: 248 QVLVIVVPLALSVMNLIWFSKIIKGLRKTLAKRQ 274

[Close]

BLAST of Cp4.1LG06g05650.1 vs. TAIR10
Match: AT4G19645.1 (AT4G19645.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 249.6 bits (636), Expect = 2.0e-66
Identity = 146/275 (53.09%), Postives = 183/275 (66.55%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVD------SNMLLSSFSSLCEF 60
           M +KSYQ+QAE  +++ +L+DP +PY S+  GI   KLV       S++ + S+S+L + 
Sbjct: 1   MEIKSYQNQAEYFVEHYLLADPFLPYTSVLVGICLCKLVYDLTELFSSIHVKSYSALTKI 60

Query: 61  ACPPPPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYF--SLITFRSSTISAFG 120
                    +   +  +ST+HAIFI+  +LY  F SDLFSD+    +L  FR+S +S FG
Sbjct: 61  K-------RIEWNNRGISTVHAIFISFMALYFAFFSDLFSDQRSLETLTVFRNSPLSTFG 120

Query: 121 LGVSAGYFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETT 180
           LGVS GYF  DLGMI W YP+LGG EY+LHH LS  AVAY++ +GE QLYTYMVLISE T
Sbjct: 121 LGVSVGYFLADLGMIFWLYPSLGGSEYILHHCLSGTAVAYSLFSGEAQLYTYMVLISEVT 180

Query: 181 TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWL--------------------VLQMHAF 240
           TP INLRWYLD AG+K+SKAYL+NGV IFFAWL                    V++MH F
Sbjct: 181 TPEINLRWYLDIAGLKRSKAYLVNGVAIFFAWLTARILLFIYMFYHVYTHYDQVIEMHTF 240

Query: 241 GQLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKRQ 248
           G LLVFVVP+ LSVMN +WF  I KGLKKTL KRQ
Sbjct: 241 GYLLVFVVPISLSVMNLIWFGKIVKGLKKTLEKRQ 268

[Close]

BLAST of Cp4.1LG06g05650.1 vs. TAIR10
Match: AT1G31300.1 (AT1G31300.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 242.7 bits (618), Expect = 2.5e-64
Identity = 141/274 (51.46%), Postives = 177/274 (64.60%), Query Frame = 1


Query: 2   SLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVDSNMLLSSFSSLCEFACPPPPP 61
           ++KSY  QA+ L+K  +L+DP +PY S+  GI   K+V           LC F       
Sbjct: 11  AIKSYHHQAQHLVKNYLLADPFIPYTSVLTGIFLCKVV---------YDLCHFISNSHSK 70

Query: 62  LLLFACHL--------AMSTLHAIFITAASLYMVFLSDLFSDRYFS-LITFRSSTISAFG 121
             +    +         +ST+HAIFI+A SLY VF SDLFSDR+ + L+ FRSS +S+ G
Sbjct: 71  TYIILTKIQRIEWNNRGISTVHAIFISAMSLYFVFWSDLFSDRWHNDLVVFRSSRLSSLG 130

Query: 122 LGVSAGYFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETT 181
           LG+S GYF  DLGMI W YP+LGG+EY++HH LS +AVAY++ +GEGQLYTYMVLISE T
Sbjct: 131 LGISIGYFLADLGMIFWKYPSLGGIEYIVHHSLSGVAVAYSLFSGEGQLYTYMVLISEIT 190

Query: 182 TPGINLRWYLDTAGMKKSKAYLINGVVIFFAWL--------------------VLQMHAF 241
           TP INLRWYLDTAGMKKS AY++NGV IF AWL                    V++MH F
Sbjct: 191 TPEINLRWYLDTAGMKKSLAYVVNGVFIFLAWLVARILLFIYMFYHVYLHYNQVMRMHIF 250

Query: 242 GQLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKR 247
           G +LVF VP  L VMN +WF  I +G+KKTLAKR
Sbjct: 251 GYVLVFGVPAALGVMNLIWFGKIVRGVKKTLAKR 275

[Close]

BLAST of Cp4.1LG06g05650.1 vs. TAIR10
Match: AT4G10360.1 (AT4G10360.1 TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein)

HSP 1 Score: 152.1 bits (383), Expect = 4.4e-37
Identity = 82/195 (42.05%), Postives = 115/195 (58.97%), Query Frame = 1


Query: 72  STLHAIFITAASLYMVFLSDLFSDRYFSLITFRSST-ISAFGLGVSAGYFFTDLGMILWF 131
           ST HA+F + AS+Y + +SD F +         S+T +S   +G+S GYF  DL MI W+
Sbjct: 63  STFHAVFTSVASIYFLVISDQFDENVHGDSVINSTTRLSESVMGISLGYFLADLAMIFWY 122

Query: 132 YPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINLRWYLDTAGMKKS 191
           +P LGG+EYV HH LS+ A+  ++ +G+ Q Y ++VL+SE TTP +NLRWYLD +G K S
Sbjct: 123 FPTLGGIEYVFHHFLSMFAIILSVTSGQSQFYIFLVLLSEATTPFVNLRWYLDNSGQKGS 182

Query: 192 KAYLINGVVIFFAWLVL--------------------QMHAFGQLLVFVVPLVLSVMNCM 246
           KAY +NG+ +F  WLV                     Q+   G   +  +P  L+VMN +
Sbjct: 183 KAYTLNGIALFLGWLVARVLLFIFFFVHMYLHFHQVKQVFPLGFYSLLTIPPALAVMNLL 242

[Close]

BLAST of Cp4.1LG06g05650.1 vs. NCBI nr
Match: gi|659133576|ref|XP_008466799.1| (PREDICTED: transmembrane protein 56-like [Cucumis melo])

HSP 1 Score: 341.3 bits (874), Expect = 1.4e-90
Identity = 194/269 (72.12%), Postives = 211/269 (78.44%), Query Frame = 1


Query: 5   SYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVD------SNMLLSSFSSLCEFACPP 64
           S +SQAEQLLKYLVLSDPVVPYISIPAG+LASKLV       S +   S+S+L       
Sbjct: 2   SLKSQAEQLLKYLVLSDPVVPYISIPAGVLASKLVYDLTDLISGVYFKSYSNLSRIQ--- 61

Query: 65  PPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYFSLITFRSSTISAFGLGVSAG 124
                +   + AMST+HAIFITAA+LYMVFLSDL+SDRYF  ITFRSSTIS FGLGVS G
Sbjct: 62  ----RVEWNNRAMSTVHAIFITAAALYMVFLSDLYSDRYFGPITFRSSTISTFGLGVSVG 121

Query: 125 YFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 184
           YF TDL MILWFYPA+GGMEYV+HHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL
Sbjct: 122 YFITDLVMILWFYPAIGGMEYVIHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 181

Query: 185 RWYLDTAGMKKSKAYLINGVVIFFAWL--------------------VLQMHAFGQLLVF 244
           RWYLDTAGMKKSKAYLING+VIFFAWL                    VLQMH FGQLLVF
Sbjct: 182 RWYLDTAGMKKSKAYLINGIVIFFAWLVARILLFMYLFYHVYLHLNQVLQMHVFGQLLVF 241

Query: 245 VVPLVLSVMNCMWFAIIFKGLKKTLAKRQ 248
           VVPL+LS+MN  WF+ IF+GLKKTLAKRQ
Sbjct: 242 VVPLILSIMNLTWFSKIFRGLKKTLAKRQ 263

[Close]

BLAST of Cp4.1LG06g05650.1 vs. NCBI nr
Match: gi|700199786|gb|KGN54944.1| (hypothetical protein Csa_4G614180 [Cucumis sativus])

HSP 1 Score: 340.5 bits (872), Expect = 2.5e-90
Identity = 187/249 (75.10%), Postives = 208/249 (83.53%), Query Frame = 1


Query: 5   SYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVD------SNMLLSSFSSLCEFACPP 64
           S +SQA +LLKYLVLSDPVVPYISIPAG+LASKLV       S++   S+S+L       
Sbjct: 2   SLKSQAGELLKYLVLSDPVVPYISIPAGVLASKLVYDLTDMISSVYFKSYSNLSRIQ--- 61

Query: 65  PPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYFSLITFRSSTISAFGLGVSAG 124
                +   + AMST+HAIFITAA+LYMVFLSDL+SD+YF  ITFR+STIS FGLGVS G
Sbjct: 62  ----RVEWNNRAMSTVHAIFITAAALYMVFLSDLYSDQYFGPITFRNSTISTFGLGVSVG 121

Query: 125 YFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 184
           YF TDL MILWFYPA+GGMEYV+HHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL
Sbjct: 122 YFITDLVMILWFYPAIGGMEYVIHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 181

Query: 185 RWYLDTAGMKKSKAYLINGVVIFFAWLVLQMHAFGQLLVFVVPLVLSVMNCMWFAIIFKG 244
           RWYLDTAGMKKSKAYLING+VIFFAWLVLQMH FGQ LVFVVP +L +MN  WF+ IF+G
Sbjct: 182 RWYLDTAGMKKSKAYLINGIVIFFAWLVLQMHVFGQFLVFVVPSILWIMNLTWFSKIFRG 241

Query: 245 LKKTLAKRQ 248
           LKKTLAKRQ
Sbjct: 242 LKKTLAKRQ 243

[Close]

BLAST of Cp4.1LG06g05650.1 vs. NCBI nr
Match: gi|778695374|ref|XP_011653984.1| (PREDICTED: transmembrane protein 56-like isoform X1 [Cucumis sativus])

HSP 1 Score: 328.6 bits (841), Expect = 9.6e-87
Identity = 187/269 (69.52%), Postives = 208/269 (77.32%), Query Frame = 1


Query: 5   SYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLVD------SNMLLSSFSSLCEFACPP 64
           S +SQA +LLKYLVLSDPVVPYISIPAG+LASKLV       S++   S+S+L       
Sbjct: 2   SLKSQAGELLKYLVLSDPVVPYISIPAGVLASKLVYDLTDMISSVYFKSYSNLSRIQ--- 61

Query: 65  PPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDRYFSLITFRSSTISAFGLGVSAG 124
                +   + AMST+HAIFITAA+LYMVFLSDL+SD+YF  ITFR+STIS FGLGVS G
Sbjct: 62  ----RVEWNNRAMSTVHAIFITAAALYMVFLSDLYSDQYFGPITFRNSTISTFGLGVSVG 121

Query: 125 YFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 184
           YF TDL MILWFYPA+GGMEYV+HHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL
Sbjct: 122 YFITDLVMILWFYPAIGGMEYVIHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINL 181

Query: 185 RWYLDTAGMKKSKAYLINGVVIFFAWL--------------------VLQMHAFGQLLVF 244
           RWYLDTAGMKKSKAYLING+VIFFAWL                    VLQMH FGQ LVF
Sbjct: 182 RWYLDTAGMKKSKAYLINGIVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHVFGQFLVF 241

Query: 245 VVPLVLSVMNCMWFAIIFKGLKKTLAKRQ 248
           VVP +L +MN  WF+ IF+GLKKTLAKRQ
Sbjct: 242 VVPSILWIMNLTWFSKIFRGLKKTLAKRQ 263

[Close]

BLAST of Cp4.1LG06g05650.1 vs. NCBI nr
Match: gi|778695377|ref|XP_011653985.1| (PREDICTED: transmembrane protein 56-like isoform X2 [Cucumis sativus])

HSP 1 Score: 288.1 bits (736), Expect = 1.4e-74
Identity = 153/198 (77.27%), Postives = 165/198 (83.33%), Query Frame = 1


Query: 70  AMSTLHAIFITAASLYMVFLSDLFSDRYFSLITFRSSTISAFGLGVSAGYFFTDLGMILW 129
           AMST+HAIFITAA+LYMVFLSDL+SD+YF  ITFR+STIS FGLGVS GYF TDL MILW
Sbjct: 25  AMSTVHAIFITAAALYMVFLSDLYSDQYFGPITFRNSTISTFGLGVSVGYFITDLVMILW 84

Query: 130 FYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINLRWYLDTAGMKK 189
           FYPA+GGMEYV+HHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINLRWYLDTAGMKK
Sbjct: 85  FYPAIGGMEYVIHHLLSLLAVAYAMLTGEGQLYTYMVLISETTTPGINLRWYLDTAGMKK 144

Query: 190 SKAYLINGVVIFFAWL--------------------VLQMHAFGQLLVFVVPLVLSVMNC 248
           SKAYLING+VIFFAWL                    VLQMH FGQ LVFVVP +L +MN 
Sbjct: 145 SKAYLINGIVIFFAWLVARILLFMYMFYHVYLHLNQVLQMHVFGQFLVFVVPSILWIMNL 204

[Close]

BLAST of Cp4.1LG06g05650.1 vs. NCBI nr
Match: gi|224085397|ref|XP_002307565.1| (hypothetical protein POPTR_0005s22760g [Populus trichocarpa])

HSP 1 Score: 287.0 bits (733), Expect = 3.2e-74
Identity = 168/273 (61.54%), Postives = 195/273 (71.43%), Query Frame = 1


Query: 1   MSLKSYQSQAEQLLKYLVLSDPVVPYISIPAGILASKLV-DSNMLLS-----SFSSLCEF 60
           M++KSYQ  AE LLK  +L+ P++PY SI  GI A K+V D   L S     S+S+L   
Sbjct: 1   MAMKSYQINAELLLKEYLLAGPLIPYTSITGGIFACKMVYDLTSLFSAVYFKSYSNLTNL 60

Query: 61  ACPPPPPLLLFACHLAMSTLHAIFITAASLYMVFLSDLFSDR-YFSLITFRSSTISAFGL 120
                    +   + A+ST HA+FIT  SLY VF SDLFSD+ +  L+TFRSS +S F L
Sbjct: 61  Q-------RIEWNNRAISTFHAVFITMMSLYFVFCSDLFSDQPHAGLVTFRSSALSTFAL 120

Query: 121 GVSAGYFFTDLGMILWFYPALGGMEYVLHHLLSLLAVAYAMLTGEGQLYTYMVLISETTT 180
           GVSAGYF  DLGMI+WFYP+LGGMEYV+HH LSL+AVAY+MLTGEGQLYTYMVLISETTT
Sbjct: 121 GVSAGYFIADLGMIIWFYPSLGGMEYVIHHSLSLIAVAYSMLTGEGQLYTYMVLISETTT 180

Query: 181 PGINLRWYLDTAGMKKSKAYLINGVVIFFAWLVL--------------------QMHAFG 240
           PGINLRWYLDTAGMKKSKAYL+NGVVIFFAW V                     QMH+FG
Sbjct: 181 PGINLRWYLDTAGMKKSKAYLLNGVVIFFAWFVARILLFIYLFYHVFLHQYQVKQMHSFG 240

Query: 241 QLLVFVVPLVLSVMNCMWFAIIFKGLKKTLAKR 247
           +LL  VVP+VLSVMN MWF  IFKG+KKTLAKR
Sbjct: 241 RLLALVVPVVLSVMNLMWFWKIFKGMKKTLAKR 266

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g05650.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g05650.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1M1_CUCSA	1.7e-90	75.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G614180 PE=4 SV=1	[more]
B9H849_POPTR	2.2e-74	61.54	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s22760g PE=4 SV=1	[more]
A0A0D2V1E3_GOSRA	2.9e-74	63.86	Uncharacterized protein OS=Gossypium raimondii GN=B456_012G039200 PE=4 SV=1	[more]
A0A151U271_CAJCA	8.0e-72	59.49	Transmembrane protein 56 OS=Cajanus cajan GN=KK1_005948 PE=4 SV=1	[more]
A0A0B2PW65_GLYSO	1.8e-71	60.22	Transmembrane protein 56-B OS=Glycine soja GN=glysoja_019966 PE=4 SV=1	[more]

BLAST of Cp4.1LG06g05650.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G19645.1	2.0e-66	53.09	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT1G31300.1	2.5e-64	51.46	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]
AT4G10360.1	4.4e-37	42.05	TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein	[more]

BLAST of Cp4.1LG06g05650.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659133576\|ref\|XP_008466799.1\|	1.4e-90	72.12	PREDICTED: transmembrane protein 56-like [Cucumis melo]	[more]
gi\|700199786\|gb\|KGN54944.1\|	2.5e-90	75.10	hypothetical protein Csa_4G614180 [Cucumis sativus]	[more]
gi\|778695374\|ref\|XP_011653984.1\|	9.6e-87	69.52	PREDICTED: transmembrane protein 56-like isoform X1 [Cucumis sativus]	[more]
gi\|778695377\|ref\|XP_011653985.1\|	1.4e-74	77.27	PREDICTED: transmembrane protein 56-like isoform X2 [Cucumis sativus]	[more]
gi\|224085397\|ref\|XP_002307565.1\|	3.2e-74	61.54	hypothetical protein POPTR_0005s22760g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR006634	TLC-dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG06g05650	Cp4.1LG06g05650	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g05650.1	Cp4.1LG06g05650.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g05650.1:five_prime_utr:001	Cp4.1LG06g05650.1:five_prime_utr:001	five_prime_UTR
Cp4.1LG06g05650.1:five_prime_utr:002	Cp4.1LG06g05650.1:five_prime_utr:002	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g05650.1:cds:001	Cp4.1LG06g05650.1:cds:001	CDS
Cp4.1LG06g05650.1:cds:002	Cp4.1LG06g05650.1:cds:002	CDS
Cp4.1LG06g05650.1:cds:003	Cp4.1LG06g05650.1:cds:003	CDS
Cp4.1LG06g05650.1:cds:004	Cp4.1LG06g05650.1:cds:004	CDS
Cp4.1LG06g05650.1:cds:005	Cp4.1LG06g05650.1:cds:005	CDS
Cp4.1LG06g05650.1:cds:006	Cp4.1LG06g05650.1:cds:006	CDS
Cp4.1LG06g05650.1:cds:007	Cp4.1LG06g05650.1:cds:007	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG06g05650.1:three_prime_utr:001	Cp4.1LG06g05650.1:three_prime_utr:001	three_prime_UTR
Cp4.1LG06g05650.1:three_prime_utr:002	Cp4.1LG06g05650.1:three_prime_utr:002	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006634	TRAM/LAG1/CLN8 homology domain	PFAM	PF03798	TRAM_LAG1_CLN8	coord: 70..206 score: 1.9
IPR006634	TRAM/LAG1/CLN8 homology domain	SMART	SM00724	lag1_27	coord: 61..244 score: 1.1
IPR006634	TRAM/LAG1/CLN8 homology domain	PROFILE	PS50922	TLC	coord: 61..244 score: 25
None	No IPR available	PANTHER	PTHR13439	CT120 PROTEIN	coord: 18..245 score: 2.3
None	No IPR available	PANTHER	PTHR13439:SF17	SUBFAMILY NOT NAMED	coord: 18..245 score: 2.3