Cp4.1LG05g13210.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g13210.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Flowering time control FPA-like protein
Location	Cp4.1LG05 : 9292817 .. 9303065 (+)
Sequence length	3554

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATAGTGGATTGTAATAAAAGATTCTGAATTATGAACCCTAACGACGATGAAGACGAGATTTTGCTCGAGCGAGCATTGATGAAGAAACTCAGCCTTCAAGGGCTTTGTAAGCTGCTATTCTCTCGATTTTGTTTATGAATTGAAACGGAGTTCCACTTCGAGTGAATTTTTGTTTGATATTACTACTTTCAAGTTTCATTCAATTTCTTTTGGGCGATTCTGAATATCCCTGCGGATTCTTGCTGTTTTCTGCTTGGAATTCAGAAACCAACGTTGAAATGGTGAGTTTCTTTCGTTTCTTTTTGACCTCTTAGTATTAGTTGAGTTCTTCAAGCCATCTTCTTTCTGATTATTGCCTTTATGTGTGTTCGATAATGGGATTGTTTCTCTGATTTGATTTCTGGTTTTCTTTTATGGTTAGTCGGGGCGGGCTGATGGGGGAAGGGATCGATACCGGAAAGATTATTCGTCGAGATATGACGAGAAGTCGCAGTCTGGGCATAGCAATAGCAGTAATCCTCCGTCGAGACATCTCTGGATCGGCAATTTGTCTCATGTTGTGGTGGAGCGGGATATCAACCGCTGTTTTTCACAGTTTGGAGAGCTTGACAGTATTGCTTTCCAGCCCAGTCGTAGCTATGCTTTCATCAATTTCAGAAGGGATGAAGATGCAATTGCAGCCATGAGAGAGCTTCAAGGTTTTGCTCTTGCTGGGAATCCCCTTAGAATTGAGTTTGCCAAGGCGGTTAGTCTTGCCCGAACTTCCTCTATCTGTTATTTTCTTCAAATTCTCTCCATGTTTCCTTTTTGTACGTCTTTGATAAAATATAAAACTTCCTTTTGGAAAATAACTACAGTAAGAGAAATGATCACTCCATTCAAATCACTTGTATACTCTTAATCCAAGTGCTCTCGTAACTCCGTTCAAGACAATGCTGACCTCCACTGATATTCTTGGCTCTAAGTCAACCCAAAACTCACTGAACTACATGAATTTAACCACTTCTCCAGAGTTCTCAGTATAACAATAGCAAAGTTCTAATGGTTTATATAGTTCAATCAGGTCTTAACTGGTATTACCGAAAATGTTAATGGAAATCTGCTCGAGGTCATACGTAATGCCTTCCACTCGTCTGCCTTGACAGTTTCTATGATTCTCAGTTGACCCATAAGGACTATGATAAAATACAAGTCAAGTGGTATTACATTCTTCAATCAAAAGGACGAATACTCAACAAACGCAACAATTTCATCACAAACATGCTTAATTTAATACCCCCAGGTAAAAAAGAAGAAGAAAAGGCTAGGCCAAGGAGTAGTTTGATTTATGTATGGTTAGAAAAGATAGAAACACTTGAAGTGTGGTTTCAATAACATGGGATGTGACAGCTTACGATCAAGGAGCTTATGATTTATATTAGCTACAAAAAATAGACGTACATTTGTAGTTGAACAATCCTTTAAGTCCTGGATCTTGCACATTCTTTTAGTGATCATTTCATGTCATTGCGATCTAATCAATCCTCCTTCACACATCCTAAACTAAAGGGTTAGACATGCTTCACAGGTGTAATAATAAATATCAATGACTTGTCAATCTCGAAAATTAAGGCATGGTAATTACTTGTCATTCCCTTATGTCGAAGGCTATTGTTAAATTGATAAATCTCAAGTAGACCAATGATGCTACTTACACAGGGTTTTTGCAGTTCCAGAAACAACCCTTTCAACTATTTACAATGCAAAAAGTTATTAATTTTATGAGTTAATGTCCAAAGAAAGAAATGTACTTCATCTTCTTTCACATAAAATCAGCATAAGCATCTACTTAATCAACCGTTGAGACAGTTCAAACCAGATTTGCATGGTTGTAGAGGGTTGCCTCATAGTGTATCATTGAAGTGTGTGTGTTTGCTTCTGTGCATGTTTATATCAATTAAATGGTAGAACTGCGTGCCATATGGAAGATTGGAGTTTGTTCTTGAAGGAAGGATCTCTAAAAAAGTTTCAGATACTGCTAGGTTGTACTGAAGGTCTTCATGATATACCAACAATTAGGCAGGCACTTCATATCCAAACTCCAATTTAAACTTTCAAGTATGGTATGATCCCCCTTATTATAGAAACCTCAATGTTACTTGACTATGAGTTATGGAATGTATTGGTACCACTCAGGGAGAAGGTCATGGATGAAAGGAAAATATCTTGACCAACTTATAAGTATCCATCATCTCTAACTTTGCTGCCCTATACATATTTCACCTAATTTAAATGGTACCACTCAGGAAGAAGGTCATAGATGAAAGGAAACTATCTTGACCAACTTATAATTATCCATAATCTCTAACTTTGCTGCACTATGCTTATTTCACCTAATGAAAATGGTACCACTCAGGGAGAAGGTCATAGATGAAAGGAAACTATCTTGACCAACTTATAATTATTCATAATCTCTAACTTCGCTGCACTATACTTATTTCACCTAATGAAAATGGTACCACTCAGGGAGAAGGTCATAGATGAAAGGAAACTATCTTGACCAACTTATAATTATCCATAATCTCTAACTTCGCTGCACTATACTTATTTCACCTAATGAAAATGGTACCACTCAGGGAGAAGGTCATAGATGAAAGGAAACTATCTTGACCAACTTATAATTATCCATAATCTCTAACTTCGCTGCACTATACTTATTTCACCTAATGAAAATAGTACCACTCACGGAGAAGGTCATAGATGAAAGGAAACTATCTTGACCAACTTATAAGTATCCATGATCTCTAACTTTGCTGCACTATACTTCACCTAATGAAAATGGATATATTGGGATAATCTGATGATGTAAATTCTGCAATGAACAAAGTTATAGATGGTAATGGAAGCCGACCATATCTTCCATCATCATATGGGAGGATATTTCTGATGCAACAAAAGTTAACACTCTCAGCTAAGCAATATGTATAAAATACCTCTAAAGATGGCCATACATCAAGAGTTTGTCATAGAACTACTTGGGTTCAACTTCATGTAAGCAATGGAGAGTTTATATTTGAGTTCTTTTTCTCATCGTCCTTTTTCCTCTTTACCTAGTTAGTGCTGCTCTATTATTTTTCTTCTGATGCATCTTTAGGTTTCAGTGTAGCAAATAACAATGAAACAGGTTTTAGCATGGGAAAAATGGTGGTATTACAGTGGAAAATTGAAATTATTGTTGAAGCTTACTTTTTCTTCTAGTGGATAATGTCCATTGTTTGCAGCTTCTCATCATTGAATAGAAGCCTTGCATAATTTAAATGTTCGCAATTTGACATGATCACTCAATGTAACATAAGGCAGCAAAACTCATAAGACGTAGCTCATAAGACTTTTTACTGCTTTGATTTTTGTATGCTGTGATCAATACCCAATAGTAAAAAGACATTCAAAGAATGCACAATATCCATCAATAAATAGACACTGACTATTCAATTTTGAGTGAATTTCTCTTTCCACGTGCCATTGTTGCGACTCTTCAAAATATGTTGAAAAGGCAGAGGCTATTCTCAAAACATGTTGAGAACCCTAGGTTACATTATTGAAATTGAATAGGGAATGGAGATTCATTTCACTATTCATCTAATCTTGTTAAACAGCACAGAGGATTCTCTTATTCTCACCAGGTAGACATCAATAAACACAGTCAAATTCTAATGTAATTGAGAAATGCATTTTATGTTTAATCTTGTTAAACATCACAGAGGAATCTCTTATTTTCACCGGGTAGACTAAAATAAACACACTAATTTAATGGAGAAATACTTTTATATGGTGCATAAACTTTCCAGTGGAGCCTAAGTGAGTATATTGTGCTCAAAGCAATTCTAAGGACACACACTTACATCTTATATAACCTGTGAGATGCACTGGTGATGTACCTAATATGCATGAGTTGAGAAGAGTATTGTTTGGCATCATACCTGAGCTGTATTAGTTTGTTTACACTTCTTTATATATGAGATTGAATGAAAGAATGTAAGGGATGTGTAACTTCCCTTGATCAGAAGCAGCTTCTAAGTTCTAATTGAGAACTTTAAAACATTTTACTGAGATCTCTGGTTAACAAAACATGATAAACTCTTTTATATATATATATATATATATATATATATATATATATATATAAAGTTGTATAAAGGAATACAGAGCAAACTATCTAGTTATATAGCTTATATTCCTAATTAATGCATTTTCACTGCCTTGGTTGTTTGTAGCATCTAGGTGCAAACATTTCCGTGTAGGCTGGGTTTATAGTGCTGAGGAAAGCATGGCCTTCGATGAAGAATGGAGTGAGGCAAAAGGATATGTAGAATATCCTCATTTTATCCTAACTATAAAAACACAGAAGTCTAATGCTCAATTAATCACAAAACTTGAAAAGAACTCAAGAATGTTAAATGGTCAGCATGTCATACAATAGATACCACACACCAAACCAACAGTCTTATGGTTGAGGAGGCTTGCATTATGTGAAAGGAGCGGTCGTTTCGTGCCTGATTTGTGCAAGTCCAGCTCATATAATATTGAGCCTGAACAGCTAGTATGGTGTACTTGATTAAGTCTGTGGTCCACATGAATGTTTGGTTACACGTATCTGTACTTGTTCATTTTCTCAGTGGTTTCCAGACAACCTCTGATTTCATTATGAGAATGAAAGGTGTATCAGTTGAACATCGTGAATAGTAATTCCAAGGGTTGAGCACAGGGTACACCGATAAAGAGTTGGTTCCAAACCCATGTTTGGGTCATTGATTTAGGTATTAAATAGTTAGACTGGATAATTATTTAACTTAGTTTGGAGGTCTTTTGCGTGACTCCTTGTCCCTATGGCCTTTTGGTTGTTTTTCTGAGCCGTTGAGATTGTCTCCAGTATACAGCCTCAAATTTTTACAAACCCCTTCCTTCTTTTTAGCTTAGGGAGGCCTTCTGTGGGACTACTCATCCCCCTTTGACATAGGGACTCCTTTCATGGCTTTAGGGTGTGTTTTGGGAGTTGGTTTAATATTGCATTTTATGTCTCATAATAATAATAATACTAATGAAGCAAGAGTTATATTTATAAAATTTGTTGAATGTGAGCTGATGAAGGTTCGGTTTTGTGTGGTGATGGCTACCTTTTGGAAAATCTTGTTAGAGGATTTTTGTTTAAAAATGGTTTACAGATTATTGAGGAAACAATCTTCTCCCTTGTAGCTAGATTGTGCAACTATTCCTTTTTGGTATCTGCCAATTGGAGAGCTTTTTGTAATCTCTGTTGGTTTGACTTGATTTAAGTTGGGACAAACTGTCCTCTCTCTTTTCCTCATTCCAAACAACTGAAAAGGTTGGAGAAGTTTTCCGTTTACACATCAAAAAGTGATATAGATTATTCATACACATAGGAAATGCTGTGTATGTGTCTCTATGTATGTAAATAGTGTACATCTTTTCTTTTCTTTTCTTTTTTTTAGTTTTGTACAGAGATTGCTAAGTTGGATCATTTCCACCATATATAATCTTTGGCAGCTCTATAAATCTCACGGAATAGTGGGAACTGGGAAAACTCCTGAAGTACTCGAGGCTTTGTTATTTTTTGTTTAGTCATCATATTCTTTACAATGGTGGACTGGGAAAACTACTAGTGAACATTGAAATGTTCCTCAAAGCCGTTATAAAGTATTAATGTTTGAACCACTTCTTACTTTATATCAAGATCAACCCATTTTCCACCATTCGTGAGGTTCATAAAGCATTCAACCGTCTTGTGTCTATTTTGTATTGGCTCTGTGAATAGGATCATTCTCTTTTTAGATTCTAAGTGAGACTCATTCTCTAAAGGTTCAAACTCATGAATCCTCTCCTTTTTGCTTAAGGTTTTGGCATAATAAGATGACAAGCATATCTCAGTCAGTTTCCGTTTCCATTTCACTGTGAAAAGAAAAACTGTCACTTATTCACAACACAACATGGGAGACAACCAAAGCAATCAAGTGTCTGAGTGTGTGAAGGCGAAGGGGTTTAGAGTTATTGTTTCCTATTCTTCTAAAAAAAAAATTCCATTCCCTATCTTCGTCATCCTTAGCTCTTTTCCTTTCTCTTATTAACTTTGAAAATTTAAAATTCAGAGCATTTTATTCAGTCATAGGCTGTTGTGCCATTAATAAGAATTTTACTCTCAGGATAAGCCATCTGCATCATCACGTGATGAAGCCTATTCTCAACACCGAGAGGATAAATATCTTGGAGCGAAGGGTTCCTTCTCACAGGGACGACATGCTAGTCCTGACGAATTTTATCCTGAAAAGTCCAAAATGAATGATAAAAATGCAGAGCCTAGTGAAGTGTTATGGATAGGATTTCCAGCTTTGTTAAAAGTGGATGAAGTGATATTAAGGAGGGCCTTTTCACCATTTGGGGAAATTGATAAGATTACAACGTTCCCTGGTCGGACGTATGCTTTTGTTCGTTTTCGGGGTGTGACATCAGCTTGGAGGGCGAAAGAAACACTACAGGGGAAACTATTTGGAAATCCCCGAGTACATATTTGTTTTGCAAAAAGTGATTCTGGATCATCAAACAGTGGAAGGAACACAATGAATGTACCTCTTTCTCCAAGATCTCCTCACCTTTTCTCAAACTTCGATTCTGGAGAATTTGATTCCCGTGGTTTTAATAGGAAAAGCAATTTATTGACCAGTGGAAACAATGCATTTGAAATGAAGAGGTCTGGAGAATTCTCATCCAAATTAGGTCCATCCGAAGATAGGTATGAACATTATGGTAGCCCGACAAAAGAGAGAGGTCTTCATTTAAATAACTTCCCTCAAAGATTTTCTCAACCTAGTCCATTTTATGACGATCCATGGGACTTGCCAGAGGATACGAACGTATATCCCGGGTCCAAGAAATTGAAGACTGGACCCTTTCCCCAGGATAAAGAGCTCCCTGAGTATCCTATATCTGATTTGGAACAAGATAAACGTATTATTCCAAAGTTATACCCTGATTTTCCCCGATCAGAGGCCTTTGATCATAAGATGAAGTCTGGGCCGCCTCTGGGGTATAAACAGCCTGATCAGCCTATGACAATGCCTGACCTTTATGGAGAAAAGAGTGAACACTGGAGGGAACCGTATGATAATTTTCAGGGTCCTGATTCTCTGCCATCGAATGCTGTTGCAAGGAAAAGGCTCTCACCTGATCCAGAACAGTCGTCTATAAAAGAGTGGAAATGGGAAGGAACTATTGCAAAGGGAGGAACACCTGTTTGTCGTGCCCGTTGTTTTCCTGTGGGAAAGGTTCTGGATATGCTTTTGTAAGTATTTGATATTCCTTTTAATTTTTGTTCCCATTAAAATCATTTTTAATCAAGTGCTGAAAAAATTATAATGCTGATTTTACCTGTTCTCATTTAACCTCAAGGCCATTAACAAGAATTTGATCCACATCCCTTCCTCTTCCTGTAACTTGATGCACTTCTTTCCACTTTAATCCTATCTTAATTTTGCTTTTCATCGGGCAGTGTTGTTTTTCCATGAAAGGTATATTTAGGGAGTGGCATGGCAATGGAAGATTTCATTTTCTTTCTGTTTATGATATTTTTGTTTGAGACAGGTTTTAATGTTTCATTTGACTTTAAAAAATGCTTTATTTGAGCTGGGAGATGAAGCATGTAGGAAACTGTTAATTTTTGTTCCCATTAAAATCATTTTTAATCAAGTGCTGAAAAAATTATAATGCTGATTTTACCTGTTCTCATTTAACCTCAAGGCCATTAACAAGAATTTGATCCACATCCCTTCCTCTTCCTGTAACTTGATGCACTTCTTTCCACTTTAATCCTATCTTAATTTTGCTTTTCATCGGGCAGTGTTGTTTTTCCATGAAAGGTATATTTAGGGAGTGGCATGGCAATGGAAGATTTCATTTTCTTTCTGTTTATGATATTTTTGTTTGAGACAGGTTTTAATGTTTCATTTGACTTTAAAAAATGCTTTATTTGAGCTGGGAGATGAAGCATGTAGGAAACTGTTAATTTTTGTTATTCTGGCCTCTATTATTAGTGAAGATCTGGTTAAATGATTTAATTACCTTGCAATAATTTGTCCTTTCACGGTAGTTGTAGTTTTGAAGTCTCCAAGTTTTTTCTCACTGACAAGAGGAAACTTTTCAGAAGATTTTCTTCTTCAAAAAAAGTATTCTGATGATTTCTTTCAAAAATTTCCTTCAGTTTTATGCTATCAGATTTGGTTCTGCTGGTATTTGGTTCTTGTCCTCTCTTTAAGTTTCATGGAATTCTGGATTGTTCATTGTAAATTGTGTGCGAATGATTGGAAGGGAAAACTTTCTCTCGCCTTCTAAAAAAGTTCTATTAAAACCCATATAGATCACTGGTGAAACTGAACTCGTATTCTGCAGGCCAGAGTTCTTAGACTGTACGGCAAGAACTGGTTTAGACATGCTTTCAAAGCATTACTATGAAGCAGCTAGTGCTTGGGTTGTTTTCTTTGTACCTGAAAGCGATTCTGATATCGTGTTCTACAATGAATTCATGAACTATCTCGGTGAAAAGCAACGAGCGGCTGTTTCGAAGTTGGATGACAGAACCACCTTGTTTCTTGTACCACCATCTGAGTTCTCAGAAAAAGTGCTCAAAGTACCAGGTAAATTGAGCATTTCAGGGGTAATTCTGAGGTTAGAGCGTCCTGGTACCAGTGCAAGGCCTCCACCTTATCAAAACGAAACAAAAGACACAAATTTTTTACCTTTACATAGTGAAACATCATATACAAAATTACCGCCGTCTCCAGCTGTTTTTACCCCAATACCACCATCTTTATCTGATCGCAGTAAATCAGGAATCAATAATGCATCATTCCCCAGGAACGTTGCTACTTCTGCTTCTCCTGTGTTATTTCATGGTTCATCACATGTTGGAAATTTGTCTGACCCATATGTTGAGTGCAGGCCTGATTATCCAATTCAAGAACAGCTAAATGCCATGGGACCGAGCTCGTCTTCTCACCATCTACAGAATTCAATGGTCGATTTTCGAAATTTTCAGTCACAAGCTTCCAACAAGGATCCTGTTATTCAGGAACGCCCTTTGTTCATTCCAAGGGAAATTCAGGAAACAGGGTACAGTAATTACGCAGTTGGGATTTCTAGTGTTACAACTCAACAAGAAACAAAACCAGCAGCTTCTTTAGCAACTACTCTTTCCTCCCTGCCGCCCGACCAACTGGCGCAATTAGCATCCTCTCTCCTTGGACATCAAAGGCAGTCGGGGAGCACGCCGAATGCAGCATTGCATGAAGAATTAAGGCAGCGAAACCAGGTGAATGAATCTGTTGTACAATTGGCAAGGTCCCAAAATGGTTCTTTTCAGAATAATCTGATGAACTCTGAGCCTCAGACATCTCAGTTTGTTCAAGTTCCACAGATGCATCATGTACAACAACACCAGATGTCGAATCAGATGTCGAACGTGCCAGCTGGGCAAAGAGAGATTCAGACAACAGGGGCTTTAGGCAATAATCAACAGGTTCAAAACTCTGATGTAGGTGGAGAATCAGAACCAGATCCACAGAAACGCCTGCAAGCGACGCTTCAGCTTGCAGCTGCTCTTCTCCAGCAAATTCATCAAGGAAAAGGAAGTTGATCTGGCTCGTTTGATCGTGTAAAACAAACTAATATGGAGTTCAGCAAGTATGGGATGGATAGCCATCCTACAGATGGTGTGAAGAAATTAACAGATTCTAAGGGAGAGATAAGCATCATCGGCCACTTGCCAGAAGTAATATTTGTTATCCTAAGTAACAAGTCCTTTTATTAAGCCTGTTTATAAGATGTTGATTAGCTAGCTAGTTAGTATCCACAGCTGCTACTGCTTTAATCCTATTAGAAACAGGAGCCATTTGTGGTAGTAATGCCGTTTTGGTTTCAAGTCTTGACATTTTGTTGGTCCTTATCTTGTTGTACCTTAGTTATTACTACTTGGGATAAGAGTTCCATTTCCTTGCTTCTGCTGGAATCCATGCCAAGATTGCCACAGTTAATAGATGAGAAGTGGAAGTTCCAGGGAGAGTTGGAATTTCGAAGTAATAATAATCATCTTGTGCCAGGCGAGTACTCTGAGTATGCAGGTTGAGTTGGGTTGGGTTGAAAAATTCTTTTAGACTAGTCCAAAATTTTGGGTTGGTGACTCGTCGTCAAGTCTAAATTTCCTTTG

mRNA sequence

ATAGTGGATTGTAATAAAAGATTCTGAATTATGAACCCTAACGACGATGAAGACGAGATTTTGCTCGAGCGAGCATTGATGAAGAAACTCAGCCTTCAAGGGCTTTGTAAGCTGCTATTCTCTCGATTTTGTTTATGAATTGAAACGGAGTTCCACTTCGAGTGAATTTTTGTTTGATATTACTACTTTCAAGTTTCATTCAATTTCTTTTGGGCGATTCTGAATATCCCTGCGGATTCTTGCTGTTTTCTGCTTGGAATTCAGAAACCAACGTTGAAATGTCGGGGCGGGCTGATGGGGGAAGGGATCGATACCGGAAAGATTATTCGTCGAGATATGACGAGAAGTCGCAGTCTGGGCATAGCAATAGCAGTAATCCTCCGTCGAGACATCTCTGGATCGGCAATTTGTCTCATGTTGTGGTGGAGCGGGATATCAACCGCTGTTTTTCACAGTTTGGAGAGCTTGACAGTATTGCTTTCCAGCCCAGTCGTAGCTATGCTTTCATCAATTTCAGAAGGGATGAAGATGCAATTGCAGCCATGAGAGAGCTTCAAGGTTTTGCTCTTGCTGGGAATCCCCTTAGAATTGAGTTTGCCAAGGCGGATAAGCCATCTGCATCATCACGTGATGAAGCCTATTCTCAACACCGAGAGGATAAATATCTTGGAGCGAAGGGTTCCTTCTCACAGGGACGACATGCTAGTCCTGACGAATTTTATCCTGAAAAGTCCAAAATGAATGATAAAAATGCAGAGCCTAGTGAAGTGTTATGGATAGGATTTCCAGCTTTGTTAAAAGTGGATGAAGTGATATTAAGGAGGGCCTTTTCACCATTTGGGGAAATTGATAAGATTACAACGTTCCCTGGTCGGACGTATGCTTTTGTTCGTTTTCGGGGTGTGACATCAGCTTGGAGGGCGAAAGAAACACTACAGGGGAAACTATTTGGAAATCCCCGAGTACATATTTGTTTTGCAAAAAGTGATTCTGGATCATCAAACAGTGGAAGGAACACAATGAATGTACCTCTTTCTCCAAGATCTCCTCACCTTTTCTCAAACTTCGATTCTGGAGAATTTGATTCCCGTGGTTTTAATAGGAAAAGCAATTTATTGACCAGTGGAAACAATGCATTTGAAATGAAGAGGTCTGGAGAATTCTCATCCAAATTAGGTCCATCCGAAGATAGGTATGAACATTATGGTAGCCCGACAAAAGAGAGAGGTCTTCATTTAAATAACTTCCCTCAAAGATTTTCTCAACCTAGTCCATTTTATGACGATCCATGGGACTTGCCAGAGGATACGAACGTATATCCCGGGTCCAAGAAATTGAAGACTGGACCCTTTCCCCAGGATAAAGAGCTCCCTGAGTATCCTATATCTGATTTGGAACAAGATAAACGTATTATTCCAAAGTTATACCCTGATTTTCCCCGATCAGAGGCCTTTGATCATAAGATGAAGTCTGGGCCGCCTCTGGGGTATAAACAGCCTGATCAGCCTATGACAATGCCTGACCTTTATGGAGAAAAGAGTGAACACTGGAGGGAACCGTATGATAATTTTCAGGGTCCTGATTCTCTGCCATCGAATGCTGTTGCAAGGAAAAGGCTCTCACCTGATCCAGAACAGTCGTCTATAAAAGAGTGGAAATGGGAAGGAACTATTGCAAAGGGAGGAACACCTGTTTGTCGTGCCCGTTGTTTTCCTGTGGGAAAGGTTCTGGATATGCTTTTGCCAGAGTTCTTAGACTGTACGGCAAGAACTGGTTTAGACATGCTTTCAAAGCATTACTATGAAGCAGCTAGTGCTTGGGTTGTTTTCTTTGTACCTGAAAGCGATTCTGATATCGTGTTCTACAATGAATTCATGAACTATCTCGGTGAAAAGCAACGAGCGGCTGTTTCGAAGTTGGATGACAGAACCACCTTGTTTCTTGTACCACCATCTGAGTTCTCAGAAAAAGTGCTCAAAGTACCAGGTAAATTGAGCATTTCAGGGGTAATTCTGAGGTTAGAGCGTCCTGGTACCAGTGCAAGGCCTCCACCTTATCAAAACGAAACAAAAGACACAAATTTTTTACCTTTACATAGTGAAACATCATATACAAAATTACCGCCGTCTCCAGCTGTTTTTACCCCAATACCACCATCTTTATCTGATCGCAGTAAATCAGGAATCAATAATGCATCATTCCCCAGGAACGTTGCTACTTCTGCTTCTCCTGTGTTATTTCATGGTTCATCACATGTTGGAAATTTGTCTGACCCATATGTTGAGTGCAGGCCTGATTATCCAATTCAAGAACAGCTAAATGCCATGGGACCGAGCTCGTCTTCTCACCATCTACAGAATTCAATGGTCGATTTTCGAAATTTTCAGTCACAAGCTTCCAACAAGGATCCTGTTATTCAGGAACGCCCTTTGTTCATTCCAAGGGAAATTCAGGAAACAGGGTACAGTAATTACGCAGTTGGGATTTCTAGTGTTACAACTCAACAAGAAACAAAACCAGCAGCTTCTTTAGCAACTACTCTTTCCTCCCTGCCGCCCGACCAACTGGCGCAATTAGCATCCTCTCTCCTTGGACATCAAAGGCAGTCGGGGAGCACGCCGAATGCAGCATTGCATGAAGAATTAAGGCAGCGAAACCAGGTGAATGAATCTGTTGTACAATTGGCAAGGTCCCAAAATGGTTCTTTTCAGAATAATCTGATGAACTCTGAGCCTCAGACATCTCAGTTTGTTCAAGTTCCACAGATGCATCATGTACAACAACACCAGATGTCGAATCAGATGTCGAACGTGCCAGCTGGGCAAAGAGAGATTCAGACAACAGGGGCTTTAGGCAATAATCAACAGGTTCAAAACTCTGATGTAGGTGGAGAATCAGAACCAGATCCACAGAAACGCCTGCAAGCGACGCTTCAGCTTGCAGCTGCTCTTCTCCAGCAAATTCATCAAGGAAAAGGAAGTTGATCTGGCTCGTTTGATCGTGTAAAACAAACTAATATGGAGTTCAGCAAGTATGGGATGGATAGCCATCCTACAGATGGTGTGAAGAAATTAACAGATTCTAAGGGAGAGATAAGCATCATCGGCCACTTGCCAGAAGTAATATTTGTTATCCTAAGTAACAAGTCCTTTTATTAAGCCTGTTTATAAGATGTTGATTAGCTAGCTAGTTAGTATCCACAGCTGCTACTGCTTTAATCCTATTAGAAACAGGAGCCATTTGTGGTAGTAATGCCGTTTTGGTTTCAAGTCTTGACATTTTGTTGGTCCTTATCTTGTTGTACCTTAGTTATTACTACTTGGGATAAGAGTTCCATTTCCTTGCTTCTGCTGGAATCCATGCCAAGATTGCCACAGTTAATAGATGAGAAGTGGAAGTTCCAGGGAGAGTTGGAATTTCGAAGTAATAATAATCATCTTGTGCCAGGCGAGTACTCTGAGTATGCAGGTTGAGTTGGGTTGGGTTGAAAAATTCTTTTAGACTAGTCCAAAATTTTGGGTTGGTGACTCGTCGTCAAGTCTAAATTTCCTTTG

Coding sequence (CDS)

ATGTCGGGGCGGGCTGATGGGGGAAGGGATCGATACCGGAAAGATTATTCGTCGAGATATGACGAGAAGTCGCAGTCTGGGCATAGCAATAGCAGTAATCCTCCGTCGAGACATCTCTGGATCGGCAATTTGTCTCATGTTGTGGTGGAGCGGGATATCAACCGCTGTTTTTCACAGTTTGGAGAGCTTGACAGTATTGCTTTCCAGCCCAGTCGTAGCTATGCTTTCATCAATTTCAGAAGGGATGAAGATGCAATTGCAGCCATGAGAGAGCTTCAAGGTTTTGCTCTTGCTGGGAATCCCCTTAGAATTGAGTTTGCCAAGGCGGATAAGCCATCTGCATCATCACGTGATGAAGCCTATTCTCAACACCGAGAGGATAAATATCTTGGAGCGAAGGGTTCCTTCTCACAGGGACGACATGCTAGTCCTGACGAATTTTATCCTGAAAAGTCCAAAATGAATGATAAAAATGCAGAGCCTAGTGAAGTGTTATGGATAGGATTTCCAGCTTTGTTAAAAGTGGATGAAGTGATATTAAGGAGGGCCTTTTCACCATTTGGGGAAATTGATAAGATTACAACGTTCCCTGGTCGGACGTATGCTTTTGTTCGTTTTCGGGGTGTGACATCAGCTTGGAGGGCGAAAGAAACACTACAGGGGAAACTATTTGGAAATCCCCGAGTACATATTTGTTTTGCAAAAAGTGATTCTGGATCATCAAACAGTGGAAGGAACACAATGAATGTACCTCTTTCTCCAAGATCTCCTCACCTTTTCTCAAACTTCGATTCTGGAGAATTTGATTCCCGTGGTTTTAATAGGAAAAGCAATTTATTGACCAGTGGAAACAATGCATTTGAAATGAAGAGGTCTGGAGAATTCTCATCCAAATTAGGTCCATCCGAAGATAGGTATGAACATTATGGTAGCCCGACAAAAGAGAGAGGTCTTCATTTAAATAACTTCCCTCAAAGATTTTCTCAACCTAGTCCATTTTATGACGATCCATGGGACTTGCCAGAGGATACGAACGTATATCCCGGGTCCAAGAAATTGAAGACTGGACCCTTTCCCCAGGATAAAGAGCTCCCTGAGTATCCTATATCTGATTTGGAACAAGATAAACGTATTATTCCAAAGTTATACCCTGATTTTCCCCGATCAGAGGCCTTTGATCATAAGATGAAGTCTGGGCCGCCTCTGGGGTATAAACAGCCTGATCAGCCTATGACAATGCCTGACCTTTATGGAGAAAAGAGTGAACACTGGAGGGAACCGTATGATAATTTTCAGGGTCCTGATTCTCTGCCATCGAATGCTGTTGCAAGGAAAAGGCTCTCACCTGATCCAGAACAGTCGTCTATAAAAGAGTGGAAATGGGAAGGAACTATTGCAAAGGGAGGAACACCTGTTTGTCGTGCCCGTTGTTTTCCTGTGGGAAAGGTTCTGGATATGCTTTTGCCAGAGTTCTTAGACTGTACGGCAAGAACTGGTTTAGACATGCTTTCAAAGCATTACTATGAAGCAGCTAGTGCTTGGGTTGTTTTCTTTGTACCTGAAAGCGATTCTGATATCGTGTTCTACAATGAATTCATGAACTATCTCGGTGAAAAGCAACGAGCGGCTGTTTCGAAGTTGGATGACAGAACCACCTTGTTTCTTGTACCACCATCTGAGTTCTCAGAAAAAGTGCTCAAAGTACCAGGTAAATTGAGCATTTCAGGGGTAATTCTGAGGTTAGAGCGTCCTGGTACCAGTGCAAGGCCTCCACCTTATCAAAACGAAACAAAAGACACAAATTTTTTACCTTTACATAGTGAAACATCATATACAAAATTACCGCCGTCTCCAGCTGTTTTTACCCCAATACCACCATCTTTATCTGATCGCAGTAAATCAGGAATCAATAATGCATCATTCCCCAGGAACGTTGCTACTTCTGCTTCTCCTGTGTTATTTCATGGTTCATCACATGTTGGAAATTTGTCTGACCCATATGTTGAGTGCAGGCCTGATTATCCAATTCAAGAACAGCTAAATGCCATGGGACCGAGCTCGTCTTCTCACCATCTACAGAATTCAATGGTCGATTTTCGAAATTTTCAGTCACAAGCTTCCAACAAGGATCCTGTTATTCAGGAACGCCCTTTGTTCATTCCAAGGGAAATTCAGGAAACAGGGTACAGTAATTACGCAGTTGGGATTTCTAGTGTTACAACTCAACAAGAAACAAAACCAGCAGCTTCTTTAGCAACTACTCTTTCCTCCCTGCCGCCCGACCAACTGGCGCAATTAGCATCCTCTCTCCTTGGACATCAAAGGCAGTCGGGGAGCACGCCGAATGCAGCATTGCATGAAGAATTAAGGCAGCGAAACCAGGTGAATGAATCTGTTGTACAATTGGCAAGGTCCCAAAATGGTTCTTTTCAGAATAATCTGATGAACTCTGAGCCTCAGACATCTCAGTTTGTTCAAGTTCCACAGATGCATCATGTACAACAACACCAGATGTCGAATCAGATGTCGAACGTGCCAGCTGGGCAAAGAGAGATTCAGACAACAGGGGCTTTAGGCAATAATCAACAGGTTCAAAACTCTGATGTAGGTGGAGAATCAGAACCAGATCCACAGAAACGCCTGCAAGCGACGCTTCAGCTTGCAGCTGCTCTTCTCCAGCAAATTCATCAAGGAAAAGGAAGTTGA

Protein sequence

MSGRADGGRDRYRKDYSSRYDEKSQSGHSNSSNPPSRHLWIGNLSHVVVERDINRCFSQFGELDSIAFQPSRSYAFINFRRDEDAIAAMRELQGFALAGNPLRIEFAKADKPSASSRDEAYSQHREDKYLGAKGSFSQGRHASPDEFYPEKSKMNDKNAEPSEVLWIGFPALLKVDEVILRRAFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHICFAKSDSGSSNSGRNTMNVPLSPRSPHLFSNFDSGEFDSRGFNRKSNLLTSGNNAFEMKRSGEFSSKLGPSEDRYEHYGSPTKERGLHLNNFPQRFSQPSPFYDDPWDLPEDTNVYPGSKKLKTGPFPQDKELPEYPISDLEQDKRIIPKLYPDFPRSEAFDHKMKSGPPLGYKQPDQPMTMPDLYGEKSEHWREPYDNFQGPDSLPSNAVARKRLSPDPEQSSIKEWKWEGTIAKGGTPVCRARCFPVGKVLDMLLPEFLDCTARTGLDMLSKHYYEAASAWVVFFVPESDSDIVFYNEFMNYLGEKQRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGKLSISGVILRLERPGTSARPPPYQNETKDTNFLPLHSETSYTKLPPSPAVFTPIPPSLSDRSKSGINNASFPRNVATSASPVLFHGSSHVGNLSDPYVECRPDYPIQEQLNAMGPSSSSHHLQNSMVDFRNFQSQASNKDPVIQERPLFIPREIQETGYSNYAVGISSVTTQQETKPAASLATTLSSLPPDQLAQLASSLLGHQRQSGSTPNAALHEELRQRNQVNESVVQLARSQNGSFQNNLMNSEPQTSQFVQVPQMHHVQQHQMSNQMSNVPAGQREIQTTGALGNNQQVQNSDVGGESEPDPQKRLQATLQLAAALLQQIHQGKGS

Homology

[Close]

BLAST of Cp4.1LG05g13210.1 vs. Swiss-Prot
Match: FPA_ARATH (Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA PE=2 SV=2)

HSP 1 Score: 138.7 bits (348), Expect = 3.2e-31
Identity = 144/497 (28.97%), Postives = 220/497 (44.27%), Query Frame = 1


Query: 436 SLPSNAVARKRLSPDPEQSSIKEWKWEGTIAKGGTPVCRARCFPVGKVLDMLLPEFLDCT 495
           S    +VA + +   P+   I    W G IAKGGTPVC ARC P+GK ++  LPE ++C+
Sbjct: 420 SFGRGSVAARPIRGPPDSDHI----WRGMIAKGGTPVCCARCVPMGKGIETKLPEVVNCS 479

Query: 496 ARTGLDMLSKHYYEAASAWVVFFVPESDSDIVFYNEFMNYLGEKQRAAVSKLDDRTTLFL 555
           ART L+ML+KHY  A    +VFFVP+ + D   Y EF+ YL  K RA V+KLDD TTLFL
Sbjct: 480 ARTDLNMLAKHYAVAIGCEIVFFVPDREEDFASYTEFLRYLSSKDRAGVAKLDDGTTLFL 539

Query: 556 VPPSEFSEKVLKVPGKLSISGVILRLERPG----------TSARPPPYQNETKDTNFLPL 615
           VPPS+F   VL+V  +  + GV+L+L  P           + + P  Y ++ +D+     
Sbjct: 540 VPPSDFLTDVLQVTRQERLYGVVLKLPPPAVPVTASYRQESQSNPLHYMDQARDS----- 599

Query: 616 HSETSYTKLPPSPAVFTPIPPSLSDRSKSGINN-ASFPRNVA----TSASPVLFHGSSHV 675
            +  S++  PP        P  L+  SK  ++     P N A     S +P L    + +
Sbjct: 600 PANASHSLYPPRENYIRGAPEHLTAASKPSVSEPLRIPNNAAPQAGVSLTPELLATLASI 659

Query: 676 GNLSDPYVECRPDYPIQEQLNAMGPSS--SSHHLQNSMVDFRNFQSQASNKDPVIQERPL 735
              +      +P  P   Q    GPS+  S+ H  N + +     SQA  +         
Sbjct: 660 LPATS-----QPAAPESHQ-PMSGPSTVVSTAHQSNGLYN-GEAPSQAWKRG-------- 719

Query: 736 FIPREIQETGYSNYAVGISSVTTQQETKPAASLATTLSSLPPDQLAQLASSLLGHQRQSG 795
             P+ + +    ++    +  T   +  P  S     S+  P+  + +    + +Q QS 
Sbjct: 720 --PQTVHDASNQSFQQYGNQYTPAGQLPPPPSRYPPASN-NPNYTSGMVHGNMQYQSQSV 779

Query: 796 STPNAALHEELRQRNQVNESVVQLARSQNGSFQNNLMNSEPQTS----QFVQVPQMHHVQ 855
           + P  +    L      N S+     S +   Q  +   +P+ S     +  +P      
Sbjct: 780 NMPQLS---PLPNMPHNNYSMYTQGSSNHPVSQPMVQQYQPEASMPNQNYGPIPSYQQAN 839

Query: 856 QHQM-SNQMSNV-PAGQREIQTTGALGNNQQVQNS----------DVGG--ESEPDPQKR 898
            H + +NQ  N+ P+  +      A   N + QN           D  G  + E D  +R
Sbjct: 840 FHGVTTNQAQNLNPSQFQAAMQPPADKANLEPQNQALRLQPMISGDGQGTTDGEVDKNQR 886

[Close]

BLAST of Cp4.1LG05g13210.1 vs. Swiss-Prot
Match: TIA1_HUMAN (Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3)

HSP 1 Score: 67.0 bits (162), Expect = 1.2e-09
Identity = 58/211 (27.49%), Postives = 91/211 (43.13%), Query Frame = 1


Query: 17  SSRYDEKSQSGHSNSSNPPSRHLWIGNLSHVVVERDINRCFSQFGELDS------IAFQP 76
           S + D  S +  S   +    H+++G+LS  +   DI   F+ FG +        +A   
Sbjct: 86  SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145

Query: 77  SRSYAFINFRRDEDAIAAMRELQGFALAGNPLRIEFAKADKPSASSRDEAYSQHREDKYL 136
           S+ Y F++F    DA  A++++ G  L G  +R  +A    P+  S  E           
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE----------- 205

Query: 137 GAKGSFSQGRHASPDEFYPEKSKMNDKNAEPSEVLWIGFPALLKVDEVILRRAFSPFGEI 196
                 S  +  S DE   + S  N        V   G  + L   E ++R+ FSPFG+I
Sbjct: 206 ------SNTKQLSYDEVVNQSSPSN------CTVYCGGVTSGLT--EQLMRQTFSPFGQI 265

Query: 197 DKITTFPGRTYAFVRFRGVTSAWRAKETLQG 222
            +I  FP + Y+FVRF    SA  A  ++ G
Sbjct: 266 MEIRVFPDKGYSFVRFNSHESAAHAIVSVNG 271

[Close]

BLAST of Cp4.1LG05g13210.1 vs. Swiss-Prot
Match: TIA1_MOUSE (Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.6e-09
Identity = 58/211 (27.49%), Postives = 91/211 (43.13%), Query Frame = 1


Query: 17  SSRYDEKSQSGHSNSSNPPSRHLWIGNLSHVVVERDINRCFSQFGELDS------IAFQP 76
           S + D  S +  S   +    H+++G+LS  +   DI   F+ FG +        +A   
Sbjct: 86  SQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGK 145

Query: 77  SRSYAFINFRRDEDAIAAMRELQGFALAGNPLRIEFAKADKPSASSRDEAYSQHREDKYL 136
           S+ Y F++F    DA  A++++ G  L G  +R  +A    P+  S  E           
Sbjct: 146 SKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPAPKSTYE----------- 205

Query: 137 GAKGSFSQGRHASPDEFYPEKSKMNDKNAEPSEVLWIGFPALLKVDEVILRRAFSPFGEI 196
                 S  +  S DE   + S  N        V   G  + L   E ++R+ FSPFG+I
Sbjct: 206 ------SNTKQLSYDEVVSQSSPNN------CTVYCGGVTSGLT--EQLMRQTFSPFGQI 265

Query: 197 DKITTFPGRTYAFVRFRGVTSAWRAKETLQG 222
            +I  FP + Y+FVRF    SA  A  ++ G
Sbjct: 266 MEIRVFPDKGYSFVRFSSHESAAHAIVSVNG 271

[Close]

BLAST of Cp4.1LG05g13210.1 vs. Swiss-Prot
Match: RU2B_MOUSE (U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=1 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 7.7e-09
Identity = 58/222 (26.13%), Postives = 102/222 (45.95%), Query Frame = 1


Query: 35  PSRHLWIGNLSHVVVERDINRC----FSQFGEL-DSIAFQPS--RSYAFINFRRDEDAIA 94
           P+  ++I N++  + + ++ R     FSQFG + D +A +    R  AF+ F+    +  
Sbjct: 5   PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64

Query: 95  AMRELQGFALAGNPLRIEFAKADKPSASSRDEAYSQHREDKYLGAKGSFSQGRHAS---P 154
           A+R+LQGF   G P+RI++AK D    S     ++   + K      +  Q   A+   P
Sbjct: 65  ALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAANKKP 124

Query: 155 DEFYPEKSKMNDKNA--------EPSEVLWI-GFPALLKVDEVILRRAFSPFGEIDKITT 214
            +  P  +      A         P+ +L++   P   + +E++L   F+ F    ++  
Sbjct: 125 GQGTPNAANTQGTAAPNPQVPDYPPNYILFLNNLPE--ETNEMMLSMLFNQFPGFKEVRL 184

Query: 215 FPGR-TYAFVRFRGVTSAWRAKETLQG-KLFGNPRVHICFAK 236
            PGR   AFV F     A  A++ LQG K+  +  + I +AK
Sbjct: 185 VPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224

[Close]

BLAST of Cp4.1LG05g13210.1 vs. Swiss-Prot
Match: RU2B_HUMAN (U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.0e-08
Identity = 58/224 (25.89%), Postives = 105/224 (46.88%), Query Frame = 1


Query: 35  PSRHLWIGNLSHVVVERDINRC----FSQFGEL-DSIAFQPS--RSYAFINFRRDEDAIA 94
           P+  ++I N++  + + ++ R     FSQFG + D +A +    R  AF+ F+    +  
Sbjct: 5   PNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTN 64

Query: 95  AMRELQGFALAGNPLRIEFAKADKPSASSRDEAYSQHREDKYLGAKGSFSQGRHASPDEF 154
           A+R+LQGF   G P+RI++AK D    S     ++   ++K    K + +  + A+    
Sbjct: 65  ALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFAD--KEKKKEKKKAKTVEQTATTTNK 124

Query: 155 YPEKSKMNDKNAE-------------PSEVLWI-GFPALLKVDEVILRRAFSPFGEIDKI 214
            P +   N  N +             P+ +L++   P   + +E++L   F+ F    ++
Sbjct: 125 KPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPE--ETNEMMLSMLFNQFPGFKEV 184

Query: 215 TTFPGR-TYAFVRFRGVTSAWRAKETLQG-KLFGNPRVHICFAK 236
              PGR   AFV F     A  A++ LQG K+  +  + I +AK
Sbjct: 185 RLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224

[Close]

BLAST of Cp4.1LG05g13210.1 vs. TrEMBL
Match: A0A0A0KA84_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G115600 PE=4 SV=1)

HSP 1 Score: 1446.0 bits (3742), Expect = 0.0e+00
Identity = 739/905 (81.66%), Postives = 794/905 (87.73%), Query Frame = 1


Query: 1   MSGRADGGRDRYRKDYSSRYDEKSQSGHSNSSNPPSRHLWIGNLSHVVVERDINRCFSQF 60
           MSGR DGGRDRYRKDY+SR+DEK QSGHSNSSNPPSRHLW+GNL+HVVVERD++R FSQF
Sbjct: 1   MSGRVDGGRDRYRKDYTSRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQF 60

Query: 61  GELDSIAFQPSRSYAFINFRRDEDAIAAMRELQGFALAGNPLRIEFAKADKPSASSRDEA 120
           GELDSIAFQPSRSYAF+NF+RDEDA+AAMRELQGF+L GNP++IEF KADKPSASSRDE 
Sbjct: 61  GELDSIAFQPSRSYAFVNFKRDEDAMAAMRELQGFSLGGNPIKIEFTKADKPSASSRDED 120

Query: 121 YSQHREDKYLGAKGSFSQGRHASPDEFYPEKSKMNDKNAEPSEVLWIGFPALLKVDEVIL 180
           YSQHRE+KY GA+GSFSQGRH SPD+FYPEKSKM+DKN EPSEVLWIGFPALLKVDE+IL
Sbjct: 121 YSQHREEKYYGARGSFSQGRHVSPDQFYPEKSKMSDKNTEPSEVLWIGFPALLKVDEMIL 180

Query: 181 RRAFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHICFAKSDSGS 240
           R+AFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHICFAK+DSGS
Sbjct: 181 RKAFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHICFAKNDSGS 240

Query: 241 SNSGRNTMNVPLSPRSPHLFSNFDSGEFDSRGFNRKSNLLTSGNNAFEMKRSGEFSSKLG 300
           SN GR+++N PLSPRSPHLFSN DSG+FDSRG NRKSNL TSGNN FEMKRSGE SSKLG
Sbjct: 241 SNGGRSSINAPLSPRSPHLFSNMDSGDFDSRGLNRKSNLWTSGNNVFEMKRSGEISSKLG 300

Query: 301 PSEDRYEHYGSPTKERGLHLNNFPQRFSQPSPFYDDPWDLPEDTNVYPGSKKLKTGPFPQ 360
           PS DRYEH GSPTKERG  LNNFPQRF QPSPFYDDPWDLPED N+Y GSKKLKTGPFPQ
Sbjct: 301 PSLDRYEH-GSPTKERGPPLNNFPQRFPQPSPFYDDPWDLPEDMNLYHGSKKLKTGPFPQ 360

Query: 361 DKELPEYPISDLEQDKRIIPKLYPDFPRSEAFDHKMKSGPPLGYKQ-PDQPMTMPDLYGE 420
           DKELPEYP+SDLEQDKRIIPKLYPDFP SE FD KMKSG PLGYKQ PD+P+TMP  YGE
Sbjct: 361 DKELPEYPLSDLEQDKRIIPKLYPDFPPSETFDKKMKSGLPLGYKQTPDRPITMPVSYGE 420

Query: 421 KSEHWREPYDNFQGPDSLPSNAVARKRLSPDPEQSSIKEWKWEGTIAKGGTPVCRARCFP 480
           KSEHWREPYDNFQ PD LP N VARKR SPD EQSS+KEWKWEGTIAKGGTPVCRARCFP
Sbjct: 421 KSEHWREPYDNFQDPDFLPPNDVARKRFSPDSEQSSVKEWKWEGTIAKGGTPVCRARCFP 480

Query: 481 VGKVLDMLLPEFLDCTARTGLDMLSKHYYEAASAWVVFFVPESDSDIVFYNEFMNYLGEK 540
           VGKVLD+LLPEFLDCTARTGLDMLSKHYYEAASAWVVFFVP+SDSDIVFYNEFM+YLGEK
Sbjct: 481 VGKVLDLLLPEFLDCTARTGLDMLSKHYYEAASAWVVFFVPQSDSDIVFYNEFMHYLGEK 540

Query: 541 QRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGKLSISGVILRLERPGTSARPPPYQNETKD 600
           QRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGKLSISGV+LRLERPG  ARPPPYQNETKD
Sbjct: 541 QRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGKLSISGVVLRLERPGAIARPPPYQNETKD 600

Query: 601 TNFLPLHSETSYTKLPPSPAVFTPIPPSLSDRSKSGINNASFPRNVATSASPVLFHGSSH 660
            N LPLHSET YTKLP  PA F P+ P LSD SKSGIN+   PRNVATSASPVLFHGS+ 
Sbjct: 601 ANLLPLHSETLYTKLPTPPARFGPVSP-LSDFSKSGINSTPLPRNVATSASPVLFHGSAQ 660

Query: 661 -VGNLSDPYVECRPDYPIQEQLNAMGPSSSSHHLQNSMVDFRNFQSQASNK--DPVIQER 720
             G+LSD YV+ R +YPIQ+Q NAMGP+++SHHLQNSM+D RN   Q SN   DP IQER
Sbjct: 661 SAGSLSDQYVDNRHEYPIQQQQNAMGPNATSHHLQNSMLDIRNIHPQPSNNSMDPAIQER 720

Query: 721 PLFIPREIQETGYSNYAVGISSVTTQQETKPAASLATTLSSLPPDQLAQLASSLLGHQRQ 780
            L   REI+ETG SNYA     ++TQQE KPAASLATTLSSLPPDQLAQLASSLLG QRQ
Sbjct: 721 HLVDLREIRETGSSNYA-----LSTQQEMKPAASLATTLSSLPPDQLAQLASSLLGQQRQ 780

Query: 781 SGSTPNAALHEELRQRNQVNESVVQLARSQNGSFQNNLMNSEPQTSQFVQVPQMHHVQQH 840
             +   A + EELRQRN VNESVV L+R  N  FQNNLMNSEPQTSQ VQVPQ+ HVQQH
Sbjct: 781 PANMSIATMTEELRQRNSVNESVVPLSRYPNVHFQNNLMNSEPQTSQIVQVPQIQHVQQH 840

Query: 841 QMSNQMSNVPAGQREIQTTGALGNNQQVQNSDVGGESEPDPQKRLQATLQLAAALLQQIH 900
           QM N        QRE+Q+     N+QQVQNSDV GE+E DPQKRLQATLQLAAALLQQI 
Sbjct: 841 QMLNATGGQLMAQREVQSEALGNNHQQVQNSDVRGEAEADPQKRLQATLQLAAALLQQIQ 898

Query: 901 QGKGS 902
           QGKG+
Sbjct: 901 QGKGN 898

[Close]

BLAST of Cp4.1LG05g13210.1 vs. TrEMBL
Match: A0A067L9N1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15026 PE=4 SV=1)

HSP 1 Score: 900.6 bits (2326), Expect = 1.6e-258
Identity = 517/951 (54.36%), Postives = 638/951 (67.09%), Query Frame = 1


Query: 3   GRADGGRDRYRKDYSSRYDEKSQSGHSNS---SNPPSRHLWIGNLSHVVVERDINRCFSQ 62
           G   GGRDR+R+D+ S  + + +  +SN+   +NPPSRHLW+GNLSH ++E D+   F Q
Sbjct: 5   GVGGGGRDRFRRDFGSSSNSRFEDINSNNKRGNNPPSRHLWVGNLSHSIMESDLTDQFLQ 64

Query: 63  FGELDSIAFQPSRSYAFINFRRDEDAIAAMRELQGFALAGNPLRIEFAKADKPSASSRDE 122
           FGELDS+AFQP RSYAFINF+ ++DAIAA++ LQGF LA NPLRIEFAKA+K SA SRDE
Sbjct: 65  FGELDSVAFQPGRSYAFINFKNEDDAIAAIKSLQGFPLASNPLRIEFAKAEKSSAPSRDE 124

Query: 123 AYSQHREDKYLGAKGS-FSQG----RHAS-PDEFYPEKSKMNDKNAEPSEVLWIGFPALL 182
            Y   R+++  G KGS FSQ     R+AS PD  Y +K K+ DK+AEPSEVLWIGFPALL
Sbjct: 125 DYLPRRDEQRSGLKGSPFSQRDSRLRNASGPDPAYADKPKIGDKSAEPSEVLWIGFPALL 184

Query: 183 KVDEVILRRAFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHICF 242
           KVDE ILR+AFSPFGEI+KIT FPGR+YAFVRFR V SA +AKETLQGKLFGNPRVHICF
Sbjct: 185 KVDETILRKAFSPFGEIEKITVFPGRSYAFVRFRNVISACKAKETLQGKLFGNPRVHICF 244

Query: 243 AKSDSGSSNSGRNTMNVPLSP-----------------------------RSPHLFSNFD 302
           AKS+ GSS+SGR    +PLSP                             RSP L SN D
Sbjct: 245 AKSEGGSSSSGR----MPLSPNYKSNGQSGASVNIRQDRNFGSLTADPSVRSPRLMSNLD 304

Query: 303 SGEFDSRGFNRKSNLLTSGNNAFEMKRSGEFSSKLGPSEDRYEHYGSPTKERGLHLNNFP 362
                  GFNRK  L   G+N  +  R GE   +LGP  D YE  GSPT+ERG H + F 
Sbjct: 305 PDP-GVYGFNRKGALYPGGSNTLDNWRFGE---ELGPPLDIYERGGSPTRERGPHFDEFS 364

Query: 363 QRFSQPSPFYDDPWDLPEDTNVYPGSKKLKTGPFPQDKELPEYPISDLEQDKRIIPKLYP 422
           QRF Q +  Y++PWDLPED+ ++ GSKKLKT  FP DKELPEYP SDLEQ+KR  P+   
Sbjct: 365 QRFPQKASIYEEPWDLPEDSYLFHGSKKLKTASFPPDKELPEYPFSDLEQEKRAFPRACT 424

Query: 423 DFPRSEAFDHKMKSGPPLGYKQPDQPMTMPDLY--GEKSEHWREPYDNFQ-GPDSLPSNA 482
           DFP+SE  D         GYK P+  + +P     GE+S+HWR  YDNFQ G  S+PSN 
Sbjct: 425 DFPQSELLDKNY------GYK-PNSDLLIPSSLPRGERSDHWRASYDNFQTGSGSMPSNP 484

Query: 483 VARKRLSPDPEQSSIKEWKWEGTIAKGGTPVCRARCFPVGKVLDMLLPEFLDCTARTGLD 542
           V RKR +P+PEQSS+K WKWEGTIAKGGTPVC A  FPVGK LD++LP+FLDCTARTGLD
Sbjct: 485 VERKRFTPEPEQSSLKLWKWEGTIAKGGTPVCHAHGFPVGKALDIMLPDFLDCTARTGLD 544

Query: 543 MLSKHYYEAASAWVVFFVPESDSDIVFYNEFMNYLGEKQRAAVSKLDDRTTLFLVPPSEF 602
           ML+KHYY+A+SAWVVFF P SD DI +YNEFM+YLGEKQRAAV+KLDD+TTLFLVPPS+F
Sbjct: 545 MLAKHYYQASSAWVVFFAPASDDDIGYYNEFMHYLGEKQRAAVAKLDDKTTLFLVPPSDF 604

Query: 603 SEKVLKVPGKLSISGVILRLERPGTSARPPPYQNETKDTNFLPLHSETSYTKLPPSPAVF 662
           SEKVL+VPGKL ISGV+LRLE PG++  P  + N+ +D N LP H +  Y K P     F
Sbjct: 605 SEKVLRVPGKLCISGVVLRLELPGSTFGPLHHPNDKRDANLLPFHGDAPYAKPPTPSGHF 664

Query: 663 TPIPPSLSDRSKSGINNASFPRNVATSASPVLFHGSSH-VGNLSDPYVECRPDYPIQEQL 722
             I     D  +SG  +ASF R+V TS  P  F GS+H V  + D Y + R DYP+Q + 
Sbjct: 665 PSIGSPFGDLGRSG-GDASFLRDVGTSGLPAAFSGSAHGVRRIPDTYNDNRHDYPLQPRD 724

Query: 723 NAMGPSSSSHHLQNSMVDFRNFQSQASNK--DPVIQERPLFIPREIQETGYSNYAVGISS 782
                + S HH   +    RN   Q SN   DPV+++    I R +Q+ G ++Y  G+ S
Sbjct: 725 PVPASNWSPHHPPGN----RNAPLQVSNTAVDPVVKDHRAVISRAVQDDGLAHYTAGMPS 784

Query: 783 V-------TTQQETKPAASLATTLSSLPPDQLAQLASSLLGHQRQSGSTPNAALHEELRQ 842
           +        + QE K +  L+  ++ L P QLAQLASSLLG QRQSGS+PN ++ E++R+
Sbjct: 785 IPLSGNGKPSLQENKSSVPLSLPIAGLQPQQLAQLASSLLGQQRQSGSSPNISVGEDVRR 844

Query: 843 RNQVNESVVQLARSQNGSFQNNLMNSEPQTSQFVQVPQMHHVQQHQMSNQMSNVPAG-QR 902
            N +N+   QL  +Q  S Q+N + SE   SQF Q+ Q+   QQ Q SN   +VP   QR
Sbjct: 845 MNTMNQLENQLRTAQTHSLQSNQVGSEISASQFSQLQQLQQ-QQQQASNVPKSVPVPVQR 904

[Close]

BLAST of Cp4.1LG05g13210.1 vs. TrEMBL
Match: B9SEZ1_RICCO (RNA binding protein, putative OS=Ricinus communis GN=RCOM_1211420 PE=4 SV=1)

HSP 1 Score: 897.5 bits (2318), Expect = 1.3e-257
Identity = 519/942 (55.10%), Postives = 637/942 (67.62%), Query Frame = 1


Query: 7   GGRDRYRKD-------YSSRYDEKSQSGHSNSSNPPSRHLWIGNLSHVVVERDINRCFSQ 66
           G RDR R+D       YS   D  S S   +SSNPPSRHLW+GNLSH ++E D+   F +
Sbjct: 15  GSRDRVRRDFVSSTSNYSRFEDSNSSSNKRSSSNPPSRHLWVGNLSHSIMENDLTDHFVR 74

Query: 67  FGELDSIAFQPSRSYAFINFRRDEDAIAAMRELQGFALAGNPLRIEFAKADKPSASSRDE 126
           FGELDS+AFQP RSYAFINF+ D++AIAA++ LQGF LAGNPLRIEFAKADK S  SRDE
Sbjct: 75  FGELDSVAFQPGRSYAFINFKNDDEAIAALKALQGFPLAGNPLRIEFAKADKSSVPSRDE 134

Query: 127 AYSQHREDKYLGAKGS-FSQG----RHASPDEFYPEKSKMNDKNAEPSEVLWIGFPALLK 186
            Y Q R+++    KGS FSQ     R ASP+ FY +KSK++DK+AEPSEVLWIGFPALLK
Sbjct: 135 DYLQRRDEQRSAMKGSPFSQRDSRLRAASPEPFYADKSKVSDKSAEPSEVLWIGFPALLK 194

Query: 187 VDEVILRRAFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHICFA 246
           VDE+ILR+AFSPFG+I+KIT FPGR+YAFVRFR V SA RAKETLQGKLFGNPRVHICFA
Sbjct: 195 VDEMILRKAFSPFGDIEKITVFPGRSYAFVRFRNVMSACRAKETLQGKLFGNPRVHICFA 254

Query: 247 KSDSGSSNSGRNTM-----------------------NVPLSPRSPHLFSNFDSGEFDSR 306
           +++ GSS SGR  +                       N+    RSP L SN D+ + D  
Sbjct: 255 RNEGGSSGSGRTPLSPHFKSNGHPGASENFRQDRTFGNLTSDSRSPSLISNLDA-DSDVY 314

Query: 307 GFNRKSNLLTSGNNAFEMKRSGEFSSKLGPSEDRYEHYGSPTKERGLHLNNFPQRFSQPS 366
           G  RKS L  SG+N F+  R GE   +L P  D YE +GSP +ERG H + F  +  Q +
Sbjct: 315 GSKRKSMLHPSGSNTFDDWRFGE---ELRPPPDVYECHGSP-RERGSHFDEFSLKLPQKA 374

Query: 367 PFYDDPWDLPEDTNVYPGSKKLKTGPFPQDKELPEYPISDLEQDKRIIPKLYPDFPRSEA 426
             Y++PWDLPE++ ++ G+KKLKTG F  DKELPEYP SDLEQ+K   P+ + +FP+ E 
Sbjct: 375 SLYEEPWDLPEESYLFHGAKKLKTGSFLPDKELPEYPFSDLEQEKHAFPRAFSEFPQPEV 434

Query: 427 FDHKMKSGPPLGYKQPDQPMTMPDLYGEKSEHWREPYDNFQGPDS-LPSNAVARKRLSPD 486
           FD         GYK      T+P  +GE+++HW+  YDNFQ   + + SN   RKR SP+
Sbjct: 435 FDKNY------GYKPNSDRPTLP--HGERTDHWKASYDNFQPVSATVLSNPGVRKRFSPE 494

Query: 487 PEQSSIKEWKWEGTIAKGGTPVCRARCFPVGKVLDMLLPEFLDCTARTGLDMLSKHYYEA 546
           PE SS++ WKWEGTIAKGGTPVC AR FPVGK LD++LPEFLDCTARTGLDML+KHYY+A
Sbjct: 495 PEPSSLRLWKWEGTIAKGGTPVCHARGFPVGKALDIMLPEFLDCTARTGLDMLAKHYYQA 554

Query: 547 ASAWVVFFVPESDSDIVFYNEFMNYLGEKQRAAVSKLDDRTTLFLVPPSEFSEKVLKVPG 606
           ASAWVVFF P SD+DI +YNEFM+YLGEKQRAAV+KLDD+TTLFLVPPS+FSEKVL+VPG
Sbjct: 555 ASAWVVFFAPASDADIGYYNEFMHYLGEKQRAAVAKLDDKTTLFLVPPSDFSEKVLRVPG 614

Query: 607 KLSISGVILRLERPGTSARPPPYQNETKDTNFLPLHSETSYTKLPPSPAVFTPIPPSLSD 666
           KL ISGV+LRLE PG +  P  + NE +DTN L  H +      PP+P+   P   SL++
Sbjct: 615 KLCISGVVLRLELPGPNLGPIHHPNERRDTNLLSFHGDA-----PPTPSGHFPSMQSLTE 674

Query: 667 RSKSGINNASFPRNVATSASPVLFHGSSH-VGNLSDPYVECRPDYPIQEQLNAMGPSSSS 726
             +S + + S  R+VATS +P  F GSSH VG +SD Y E R DYPIQ++    GP+ S 
Sbjct: 675 LGRS-VGDPSLLRDVATSGTPAAFSGSSHAVGRISDSYNESRHDYPIQQRNPMHGPNWSP 734

Query: 727 HHLQNSMVDFRNFQSQASNK--DPVIQERPLFIPREIQETGYSNYAVGISSVTTQ----- 786
           HH Q S    RN  SQ  N   DPV QE    IPR +QE   ++Y  G+SS T       
Sbjct: 735 HHPQIS--GNRNTPSQGYNTAIDPVSQEHHSAIPRAVQEDALAHYTSGMSSNTLSGNRQS 794

Query: 787 --QETKPAASLATTLSSLPPDQLAQLASSLLGHQRQSGSTPNAALHEELRQRNQVNESVV 846
             QE KP+   +  ++ L P QLAQLASSLLG QRQ GS PN ++ E++RQ N +N    
Sbjct: 795 SLQENKPSIPSSLPIAGLQPQQLAQLASSLLGQQRQPGSNPNVSMGEDIRQTNTMNPPEN 854

Query: 847 QLARSQNGSFQNNLMNSEPQTSQFVQVPQMHHVQQHQMSNQMSNVP-AGQREIQTTGALG 902
           Q+  +Q   FQN+ M S+   SQF Q P     QQHQ SN    VP A QRE+Q+  +  
Sbjct: 855 QVRTAQAHGFQNSRMVSDISKSQFGQ-PLKFQQQQHQASNVPKPVPTAVQREVQSVSS-- 914

[Close]

BLAST of Cp4.1LG05g13210.1 vs. TrEMBL
Match: A0A059VC50_9ROSI (Flowering time control protein FPA1 OS=Dimocarpus longan GN=FPA1 PE=2 SV=1)

HSP 1 Score: 877.5 bits (2266), Expect = 1.4e-251
Identity = 507/951 (53.31%), Postives = 636/951 (66.88%), Query Frame = 1


Query: 1   MSGRADGGRDRYRKDYSSRYDEKSQSGHSN--SSNPPSRHLWIGNLSHVVVERDINRCFS 60
           M+GR  G RDR+R     R+D+K + G     +  PPSRHLWIGNLSH + E D+     
Sbjct: 1   MTGRVGGERDRFRP----RFDDKPRGGGGGGRAKAPPSRHLWIGNLSHSIEEADLRDQLL 60

Query: 61  QFGELDSIAFQPSRSYAFINFRRDEDAIAAMRELQGFALAGNPLRIEFAKADKPSASSRD 120
           +FGEL+S+AFQP RSYAF+NF  +EDA A+M+ LQGF LAGNPLRIEFAKADKPS  S D
Sbjct: 61  RFGELESVAFQPGRSYAFVNFVSEEDAFASMKALQGFPLAGNPLRIEFAKADKPSIPSHD 120

Query: 121 EAYSQHREDKYLGAKGS-FSQG----RHASP-DEFYPEKSKMNDKNAEPSEVLWIGFPAL 180
             +  HR+D    ++GS +SQ     RHASP D  Y +KSKM+DK+A+PSEVLWIGFPAL
Sbjct: 121 GDHLLHRDDHRSASRGSPYSQRDSRVRHASPTDTLYSDKSKMSDKSADPSEVLWIGFPAL 180

Query: 181 LKVDEVILRRAFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHIC 240
           LKVDE+ILR+AFSPFGEI+KIT FPGR+YAFVRFR +TSA RAKETLQGKLFGNPRVHIC
Sbjct: 181 LKVDEMILRKAFSPFGEIEKITVFPGRSYAFVRFRSITSACRAKETLQGKLFGNPRVHIC 240

Query: 241 FAKSDSGSSNSGRNTMNVPLSP-----------------------------RSPHLFSNF 300
           FA+SD GSSNS R ++N P SP                             RS     N 
Sbjct: 241 FARSDGGSSNSTRGSVNAPPSPHFKLNGRSGSSENYRPDRNLGSFPGDHSGRSSQFVPNL 300

Query: 301 DSGEFDSRGFNRKSNLLTSGNNAFEMKRSGEFSSKLGPSEDRYEHYGSPTKERGLHLNNF 360
           DS + D+  FNRK          +E  R GE  S+L PS+D YE   SP  ER +H ++F
Sbjct: 301 DSEDADAYDFNRKGT--------YEPWRYGEMGSELEPSQDMYELRRSPPGERIVHFHDF 360

Query: 361 PQRFSQPSPFYDDPWDLPEDTNVYPGSKKLKTGPFPQDKELPEYPISDLEQDKRIIPKLY 420
           PQ+ S     Y+D WD PED   +PG+KKLKTG +P DKELPEYP SDLEQ+KR   + +
Sbjct: 361 PQKDS----CYEDHWDFPEDDYYHPGAKKLKTGSYPPDKELPEYPFSDLEQEKRAFSRTF 420

Query: 421 PDFPRSEAFDHKMKSGPPLGYKQ-PDQPMTMPDLYGEKSEHWREPYDNFQ-GPDSLPSNA 480
            DFP+ EAF+    SGP LGYKQ PD  +       E +++W+ PYD+FQ G  SLP + 
Sbjct: 421 SDFPQPEAFNKNFDSGP-LGYKQIPDHRLNQALPQRELNDNWKAPYDSFQTGSVSLPPHP 480

Query: 481 VARKRLSPDPEQSSIKEWKWEGTIAKGGTPVCRARCFPVGKVLDMLLPEFLDCTARTGLD 540
             RKR +P+ +Q S+K+WKW+GTIAKGGTPVCRARCFPVGKV+DM+LPEFLDCTART LD
Sbjct: 481 AERKRFTPESDQPSLKDWKWDGTIAKGGTPVCRARCFPVGKVMDMMLPEFLDCTARTSLD 540

Query: 541 MLSKHYYEAASAWVVFFVPESDSDIVFYNEFMNYLGEKQRAAVSKLDDRTTLFLVPPSEF 600
           ML+KHYY+A+ AWVVFFVP SD+D+  YNEFM+YL EKQRAAV+KLDD  TLFLVPPS+F
Sbjct: 541 MLAKHYYQASGAWVVFFVPGSDADMGSYNEFMHYLEEKQRAAVAKLDDSNTLFLVPPSDF 600

Query: 601 SEKVLKVPGKLSISGVILRLERPGTSARPPPYQNETKDTNFLPLHSETSYTKLPPSPAVF 660
           SEKVLKVPGKLSISGV+LRL+ PG+S     Y +E KDTN    +++ SY +   +   F
Sbjct: 601 SEKVLKVPGKLSISGVVLRLDHPGSSQGSLHYPSEVKDTNLSSFNADASYPRPLTTSGPF 660

Query: 661 TPIPPSLSDRSKSGINNASFPRNVATSASPVLFHGS-SHVGNLSDPYVECRPDYPIQEQL 720
            P+  S  D  KSG+ N SF  +++  A P  + GS   +G +SDPY E R +YPI ++ 
Sbjct: 661 PPL-TSFPDIGKSGMGNLSFAGDLSIPAPPASYAGSIQAMGTVSDPYSENRHEYPIHQRN 720

Query: 721 NAMGPSSSSHHLQNSMVDF-RNFQSQASNK--DPVIQERPLFIPREIQETGYSNYAVGI- 780
             +GP+ S H+LQN+ V   RN  S AS+   D V+Q  P   PR +QET  S+YA GI 
Sbjct: 721 TTLGPNRSPHNLQNNPVSLTRNMPSHASDSSVDSVMQGHPSVAPRVVQETSSSHYAGGIP 780

Query: 781 ------SSVTTQQETKPAASLATTLSSLPPDQLAQLASSLLGHQRQSGSTPNAALHEELR 840
                 +S  +  ETKP+ SL   ++SL PDQLAQLAS+LLG QRQ+ ++PN ++ E  R
Sbjct: 781 GIPLPENSKLSHPETKPSVSLPGPIASLQPDQLAQLASTLLGQQRQAANSPNLSMGESHR 840

Query: 841 QRNQVNESVVQLARSQNGSFQNNLMNSEPQTSQFVQVPQMHHVQQHQMSNQMSNVPAGQR 900
           Q +  ++S      SQ+ + Q+N M  E  TSQF QV Q+    Q Q S+  + VP    
Sbjct: 841 QTSTGHQSENPYRPSQSYAMQSNQMAPEFSTSQFSQVQQL----QQQASSTPATVPP--- 900

Query: 901 EIQTTGALGNNQQVQNSDVGGESEPDPQKRLQATLQLAAALLQQIHQGKGS 902
             Q    +  +QQ+QN+    E++ DPQKRLQATLQLAAALLQQI +GKG+
Sbjct: 901 --QVQPGVQGSQQLQNTS-NQEADGDPQKRLQATLQLAAALLQQIQRGKGT 923

[Close]

BLAST of Cp4.1LG05g13210.1 vs. TrEMBL
Match: B9IAX2_POPTR (RNA recognition motif containing family protein OS=Populus trichocarpa GN=POPTR_0014s17010g PE=4 SV=2)

HSP 1 Score: 865.9 bits (2236), Expect = 4.3e-248
Identity = 487/929 (52.42%), Postives = 613/929 (65.98%), Query Frame = 1


Query: 8   GRDRYRKDYSSRYDEKSQSGHSNSSNPPSRHLWIGNLSHVVVERDINRCFSQFGELDSIA 67
           GRDR+R++++S   E S S     +NPPSRHLW+GNLSH + E D+   F QFG+LDS+A
Sbjct: 13  GRDRFRREFTSSRFESSNSNGKRGNNPPSRHLWVGNLSHSIEETDLTDEFLQFGDLDSVA 72

Query: 68  FQPSRSYAFINFRRDEDAIAAMRELQGFALAGNPLRIEFAKADKPSASSRDEAYSQHRED 127
           FQP RSYAF+NF ++EDAIAA++ LQG+ LAGNPLRIEFAKADK S  S DE Y Q R++
Sbjct: 73  FQPGRSYAFVNFNKEEDAIAAIKSLQGYPLAGNPLRIEFAKADKSSTPSHDEDYLQRRDE 132

Query: 128 KYLGAKGS-----FSQGRHASPDEFYPEKSKMNDKNAEPSEVLWIGFPALLKVDEVILRR 187
           + L  +GS      S+ R+ASP+ FYP+KSKM+D +AEPSEVLWIGFPALLKVDE+ILR+
Sbjct: 133 QRLTLRGSPFLQRDSRVRNASPETFYPDKSKMSDNSAEPSEVLWIGFPALLKVDEMILRK 192

Query: 188 AFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHICFAKSDSGSSN 247
           AFSPFGEI+KIT FPGR+YAFVRF  +TSA RAKETLQGKLFGNPRVHICFAK+++GSSN
Sbjct: 193 AFSPFGEIEKITVFPGRSYAFVRFTNLTSACRAKETLQGKLFGNPRVHICFAKNEAGSSN 252

Query: 248 SGRNTMNVPLSP-------------------------RSPHLFSNFDSGEFDSRGFNRKS 307
           SGR  ++    P                         RSP   S+ D  + D  G NRK 
Sbjct: 253 SGRTPLSPHYKPNSRQGGPENFWQDRNFGSTATDPSIRSPRFNSDLDPADSDVYGLNRKG 312

Query: 308 NLLTSGNNAFEMKRSGEFSSKLGPSEDRYEHYGSPTKERGLHLNNFPQRFSQPSPFYDDP 367
            L   GN AF+  R GE   +LGP  D YE +GSPT+ R  H + F ++  Q  PFY++P
Sbjct: 313 TLHQVGNGAFDNWRFGE---ELGPPPDVYERHGSPTRGRDAHFHEFAKKNPQKGPFYEEP 372

Query: 368 WDLPEDTNVYPGSKKLKTGPFPQDKELPEYPISDLEQDKRIIPKLYPDFPRSEAFDHKMK 427
           WDLPED+ +Y  +KKLKTG FP DKELPEYP SDLEQ++R  P+ + DFP+ EAFD  ++
Sbjct: 373 WDLPEDSYLYHEAKKLKTGSFPPDKELPEYPYSDLEQERRAFPRAFSDFPQPEAFDKNLE 432

Query: 428 SGPPLGYKQ-PDQPMTMPDLYGEKSEHWREPYDNFQ-GPDSLPSNAVARKRLSPDPEQSS 487
           +GP  GY    D+P+ +   +GE+S+ W+  YDNFQ G  SLP+N   RKR +P+PE SS
Sbjct: 433 AGP-FGYTPIQDRPINLSLPHGERSDPWKVSYDNFQAGSGSLPTNRTERKRFTPEPEPSS 492

Query: 488 IKEWKWEGTIAKGGTPVCRARCFPVGKVLDMLLPEFLDCTARTGLDMLSKHYYEAASAWV 547
           +K WKWEGTIAKGGTPVC ARCFPVGK LD +LP+FLDCTARTGLDML+KHYY+AASAWV
Sbjct: 493 LKLWKWEGTIAKGGTPVCHARCFPVGKALDFMLPDFLDCTARTGLDMLAKHYYQAASAWV 552

Query: 548 VFFVPESDSDIVFYNEFMNYLGEKQRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGKLSIS 607
           VFFVP SD+D+ +YNE M+YL EKQRAAV+KLDD+TTLFLVPPS+FSEKVL+VPGKLSIS
Sbjct: 553 VFFVPASDADMGYYNELMHYLEEKQRAAVAKLDDKTTLFLVPPSDFSEKVLRVPGKLSIS 612

Query: 608 GVILRLERPGTSARPPPYQNETKDTNFLPLHSETSYTKLPPSPAVFTPIPPSLSDRSKSG 667
           GVILRLE  G++  P  + NE +D N LP H + SY K PP+ +   P   S SD S+SG
Sbjct: 613 GVILRLENSGSNLGPVHHPNEKRDMNILPFHRDPSYPK-PPTHSGQFPAMVSFSDLSRSG 672

Query: 668 INNASFPRNVATSASPVLFHGSSH-VGNLSDPYVECRPDYPIQEQLNAMGPSSSSHHLQN 727
             + +F  NVA++A PV F G +H  G++SD Y E R  YP+Q+Q + + P+ S HH Q+
Sbjct: 673 -GDPAFLGNVASTAPPVAFSGPAHPAGSISDSYNESRHHYPLQQQNSTLRPNWSPHHSQS 732

Query: 728 SMVDFRNFQSQASNK--DPVIQERPLFIPREIQETGYSNYAVGISSVTTQQETKPAASLA 787
            +   RN  SQASN   DP                            +T QETKP+  ++
Sbjct: 733 IVSGNRNVPSQASNTAVDP----------------------------STFQETKPSVPVS 792

Query: 788 TTLSSLPPDQLAQLASSLLGHQRQSGSTPNAALHEELRQRNQVNESVVQLARSQNGSFQN 847
             ++ L P QLAQLASSLLG QR                          L  + NGS   
Sbjct: 793 LPIAGLQPQQLAQLASSLLGQQR-------------------------LLGNNSNGSASE 852

Query: 848 NLMNSEPQTSQFVQVPQMHHVQQHQMSNQMSNVPAGQREIQTTGALGNNQQVQNSDVGGE 902
           +   ++                  Q+SN  ++VP   R+    GA GN  +++++    E
Sbjct: 853 DFKRTQ------------------QVSNVPTSVPPPVRKELQPGAQGN-PRMESAGTQEE 863

[Close]

BLAST of Cp4.1LG05g13210.1 vs. TAIR10
Match: AT4G12640.1 (AT4G12640.1 RNA recognition motif (RRM)-containing protein)

HSP 1 Score: 609.4 bits (1570), Expect = 3.6e-174
Identity = 398/908 (43.83%), Postives = 508/908 (55.95%), Query Frame = 1


Query: 33  NPPSRHLWIGNLSHVVVERDINRCFSQFGELDSIAFQPSRSYAFINFRRDEDAIAAMREL 92
           NPPSRHLW+GNL H ++ER++   F +FGEL+S+AFQP RSYAF+NF  DEDA AA+  L
Sbjct: 19  NPPSRHLWVGNLPHGILERELADRFLRFGELESLAFQPGRSYAFVNFNHDEDAFAAIESL 78

Query: 93  QGFALAGNPLRIEFAKADKPSASSRDEAYSQHREDKYLGAKGSF----SQGRHASPDEFY 152
           QGF L+GNPLRIEFAKA+K S  SR +   +H E +      SF    S+ R+ SPD + 
Sbjct: 79  QGFPLSGNPLRIEFAKAEKSSTGSRTDDIYRHDEQRSAARGSSFVQRDSRMRYESPDTY- 138

Query: 153 PEKSKMNDKNAEPSEVLWIGFPALLKVDEVILRRAFSPFGEIDKITTFPGRTYAFVRFRG 212
             KSKMND+NAEPSEVL+IGFPA LKVD+ +LR  FS FGEI K+T FPGR+YAFV+FR 
Sbjct: 139 -SKSKMNDRNAEPSEVLYIGFPASLKVDDALLRNVFSSFGEITKVTVFPGRSYAFVQFRN 198

Query: 213 VTSAWRAKETLQGKLFGNPRVHICFAKSDSGSSNSGRNTMNVPLSP-------------- 272
           + +A +AKE+LQGKLFGNPRVHICFAKS+  SS SGR      LSP              
Sbjct: 199 LMAACKAKESLQGKLFGNPRVHICFAKSEPSSSGSGRGPSGRSLSPPYRSVDRLGSSEGY 258

Query: 273 ---------------RSPHLFSNFDSGEFDSRGFNRKSNLLTSGNNAFEMKRSGEFSSKL 332
                          R PH   + D  + +   FNRK +  + G  A+   RS       
Sbjct: 259 LQDRNYGSISRIPSVREPHYIEDRDLEDSEGYIFNRKRDSSSDGGPAYGRSRSTHRFP-- 318

Query: 333 GPSEDRYEHYGSPTKERGLHLNNFPQRFSQPSPFYDDPWDLPEDTNVYPGSKKLKTGPFP 392
              +D +E++GSP  E G    + P RF   S  Y++PWDLPED   Y   K+LKT    
Sbjct: 319 ---QDMHEYHGSPG-EMGTSFRDNPHRFQTRSSEYEEPWDLPEDDYYYQEIKRLKTRSSQ 378

Query: 393 QDKELPEYPISDLEQDKRIIPKLYPDFPRSEAFDHKMKSGPPLGYKQP-DQPMTMPDLYG 452
            +++LP + +S +EQ++R   +   DF   +AF+   ++G  L Y Q  +QP+ +    G
Sbjct: 379 PERQLPGHQLSGIEQERRPFSRASADFSPKDAFERNYEAG-QLRYNQTVEQPLNLAIRNG 438

Query: 453 EKSEHWREPYDNFQGPDSLPSNAVARKRLSPDPEQSSIKEWKWEGTIAKGGTPVCRARCF 512
           +KS   REP++   G   LPS    RKR +P+  + S+K+W WEGTIAKGG P+CRA+CF
Sbjct: 439 DKSS-LREPHEELMGGYPLPSVVPERKRYTPELNRPSLKDWNWEGTIAKGGNPICRAKCF 498

Query: 513 PVGKVLDMLLPEFLDCTARTGLDMLSKHYYEAASAWVVFFVPESDSDIVFYNEFMNYLGE 572
           PVGKV+DM+LPEFLDCTARTGLDML+KHYY+++ AWVVFFVP SD+DIVFY+EFM+YL E
Sbjct: 499 PVGKVMDMMLPEFLDCTARTGLDMLAKHYYQSSKAWVVFFVPGSDADIVFYDEFMHYLEE 558

Query: 573 KQRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGKLSISGVILRLERPGT-SARPPPYQNET 632
           KQRAAVSKLDD TTLFLVPPS+FSEKVLKVPGKLSISGVILRLE  G+ S  P   Q E 
Sbjct: 559 KQRAAVSKLDDTTTLFLVPPSDFSEKVLKVPGKLSISGVILRLECGGSGSGGPVQQQGER 618

Query: 633 KDTNFLPLHSETSYTKLPPS-PAVFTP-IPPSLSDRSKSGINNASFPRNVATSASPVLFH 692
           KDT+ L  + ETSY++   + P V  P IP   +    +G +N         SAS     
Sbjct: 619 KDTDLLTYYGETSYSEASGAFPDVGNPRIPGPTAFLRSAGRDN--------QSAS----- 678

Query: 693 GSSHVGNLSDPYVECRPDYPIQEQLNAMGPSSSSHHLQNSMVDFRNFQSQASNKDPVIQE 752
                    DPYVE + D        +  P   ++   +  +D              +Q+
Sbjct: 679 --------MDPYVEDKHDQLSHRYSGSDWPPRDTNPRSSPFIDH------------TVQK 738

Query: 753 RPLFIPREIQETGYSNYAVGISSVTTQQETKPAASLATTLSSLPPDQLAQLASSLLGHQR 812
              F+P + Q    S Y           ET   A          P+QL  LASSL   Q+
Sbjct: 739 HSGFVPGKQQNADLSRY--------HDTETPVPA-------GFQPEQLTHLASSLPRQQQ 798

Query: 813 QSGSTPNAALHEELRQRNQVNESVVQLARSQNGSFQNNLMNSEPQTSQFVQVPQMHHVQ- 872
           Q  +TPN    E      + + S +Q A++             P   Q V  PQ  +VQ 
Sbjct: 799 QVQNTPNQP--ERYAPEGRASFSHLQHAQT-------------PSIPQLV-TPQNQNVQI 823

Query: 873 QHQMSNQMSNVPAG-QREIQTTGALGNNQQVQNSDVGGESEPDPQKRLQATLQLAAALLQ 902
           Q   S Q     A  Q+ +Q T                             LQLAAALLQ
Sbjct: 859 QSSNSQQQEETEANPQKRLQAT-----------------------------LQLAAALLQ 823

[Close]

BLAST of Cp4.1LG05g13210.1 vs. TAIR10
Match: AT2G43410.2 (AT2G43410.2 RNA binding)

HSP 1 Score: 138.7 bits (348), Expect = 1.8e-32
Identity = 144/497 (28.97%), Postives = 220/497 (44.27%), Query Frame = 1


Query: 436 SLPSNAVARKRLSPDPEQSSIKEWKWEGTIAKGGTPVCRARCFPVGKVLDMLLPEFLDCT 495
           S    +VA + +   P+   I    W G IAKGGTPVC ARC P+GK ++  LPE ++C+
Sbjct: 420 SFGRGSVAARPIRGPPDSDHI----WRGMIAKGGTPVCCARCVPMGKGIETKLPEVVNCS 479

Query: 496 ARTGLDMLSKHYYEAASAWVVFFVPESDSDIVFYNEFMNYLGEKQRAAVSKLDDRTTLFL 555
           ART L+ML+KHY  A    +VFFVP+ + D   Y EF+ YL  K RA V+KLDD TTLFL
Sbjct: 480 ARTDLNMLAKHYAVAIGCEIVFFVPDREEDFASYTEFLRYLSSKDRAGVAKLDDGTTLFL 539

Query: 556 VPPSEFSEKVLKVPGKLSISGVILRLERPG----------TSARPPPYQNETKDTNFLPL 615
           VPPS+F   VL+V  +  + GV+L+L  P           + + P  Y ++ +D+     
Sbjct: 540 VPPSDFLTDVLQVTRQERLYGVVLKLPPPAVPVTASYRQESQSNPLHYMDQARDS----- 599

Query: 616 HSETSYTKLPPSPAVFTPIPPSLSDRSKSGINN-ASFPRNVA----TSASPVLFHGSSHV 675
            +  S++  PP        P  L+  SK  ++     P N A     S +P L    + +
Sbjct: 600 PANASHSLYPPRENYIRGAPEHLTAASKPSVSEPLRIPNNAAPQAGVSLTPELLATLASI 659

Query: 676 GNLSDPYVECRPDYPIQEQLNAMGPSS--SSHHLQNSMVDFRNFQSQASNKDPVIQERPL 735
              +      +P  P   Q    GPS+  S+ H  N + +     SQA  +         
Sbjct: 660 LPATS-----QPAAPESHQ-PMSGPSTVVSTAHQSNGLYN-GEAPSQAWKRG-------- 719

Query: 736 FIPREIQETGYSNYAVGISSVTTQQETKPAASLATTLSSLPPDQLAQLASSLLGHQRQSG 795
             P+ + +    ++    +  T   +  P  S     S+  P+  + +    + +Q QS 
Sbjct: 720 --PQTVHDASNQSFQQYGNQYTPAGQLPPPPSRYPPASN-NPNYTSGMVHGNMQYQSQSV 779

Query: 796 STPNAALHEELRQRNQVNESVVQLARSQNGSFQNNLMNSEPQTS----QFVQVPQMHHVQ 855
           + P  +    L      N S+     S +   Q  +   +P+ S     +  +P      
Sbjct: 780 NMPQLS---PLPNMPHNNYSMYTQGSSNHPVSQPMVQQYQPEASMPNQNYGPIPSYQQAN 839

Query: 856 QHQM-SNQMSNV-PAGQREIQTTGALGNNQQVQNS----------DVGG--ESEPDPQKR 898
            H + +NQ  N+ P+  +      A   N + QN           D  G  + E D  +R
Sbjct: 840 FHGVTTNQAQNLNPSQFQAAMQPPADKANLEPQNQALRLQPMISGDGQGTTDGEVDKNQR 886

[Close]

BLAST of Cp4.1LG05g13210.1 vs. TAIR10
Match: AT3G08000.1 (AT3G08000.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 56.6 bits (135), Expect = 9.1e-08
Identity = 32/85 (37.65%), Postives = 46/85 (54.12%), Query Frame = 1


Query: 29  SNSSNPPSRHLWIGNLSHVVVERDINRCFSQFGELDSIAFQ------PSRSYAFINFRRD 88
           ++SS  PS  L+IG LS  V E+ +   FS FGE+  +          SR + F++F  +
Sbjct: 33  TSSSASPSSKLFIGGLSWSVDEQSLKDAFSSFGEVAEVRIAYDKGSGRSRGFGFVDFAEE 92

Query: 89  EDAIAAMRELQGFALAGNPLRIEFA 108
            DA++A   + G  L G PLRI FA
Sbjct: 93  GDALSAKDAMDGKGLLGRPLRISFA 117

[Close]

BLAST of Cp4.1LG05g13210.1 vs. TAIR10
Match: AT1G71800.1 (AT1G71800.1 cleavage stimulating factor 64)

HSP 1 Score: 50.4 bits (119), Expect = 6.5e-06
Identity = 26/96 (27.08%), Postives = 49/96 (51.04%), Query Frame = 1


Query: 31  SSNPPSRHLWIGNLSHVVVERDINRCFSQFGELDSIAFQPSRS------YAFINFRRDED 90
           SS+   R +++GN+ +   E  +     + G + S      R       Y F  ++ +E 
Sbjct: 3   SSSSQRRCVFVGNIPYDATEEQLREICGEVGPVVSFRLVTDRETGKPKGYGFCEYKDEET 62

Query: 91  AIAAMRELQGFALAGNPLRIEFAKADKPSASSRDEA 121
           A++A R LQ + + G  LR++FA+ DK +  +RD++
Sbjct: 63  ALSARRNLQSYEINGRQLRVDFAENDKGTDKTRDQS 98

[Close]

BLAST of Cp4.1LG05g13210.1 vs. NCBI nr
Match: gi|449444608|ref|XP_004140066.1| (PREDICTED: flowering time control protein FPA [Cucumis sativus])

HSP 1 Score: 1446.0 bits (3742), Expect = 0.0e+00
Identity = 739/905 (81.66%), Postives = 794/905 (87.73%), Query Frame = 1


Query: 1   MSGRADGGRDRYRKDYSSRYDEKSQSGHSNSSNPPSRHLWIGNLSHVVVERDINRCFSQF 60
           MSGR DGGRDRYRKDY+SR+DEK QSGHSNSSNPPSRHLW+GNL+HVVVERD++R FSQF
Sbjct: 1   MSGRVDGGRDRYRKDYTSRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQF 60

Query: 61  GELDSIAFQPSRSYAFINFRRDEDAIAAMRELQGFALAGNPLRIEFAKADKPSASSRDEA 120
           GELDSIAFQPSRSYAF+NF+RDEDA+AAMRELQGF+L GNP++IEF KADKPSASSRDE 
Sbjct: 61  GELDSIAFQPSRSYAFVNFKRDEDAMAAMRELQGFSLGGNPIKIEFTKADKPSASSRDED 120

Query: 121 YSQHREDKYLGAKGSFSQGRHASPDEFYPEKSKMNDKNAEPSEVLWIGFPALLKVDEVIL 180
           YSQHRE+KY GA+GSFSQGRH SPD+FYPEKSKM+DKN EPSEVLWIGFPALLKVDE+IL
Sbjct: 121 YSQHREEKYYGARGSFSQGRHVSPDQFYPEKSKMSDKNTEPSEVLWIGFPALLKVDEMIL 180

Query: 181 RRAFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHICFAKSDSGS 240
           R+AFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHICFAK+DSGS
Sbjct: 181 RKAFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHICFAKNDSGS 240

Query: 241 SNSGRNTMNVPLSPRSPHLFSNFDSGEFDSRGFNRKSNLLTSGNNAFEMKRSGEFSSKLG 300
           SN GR+++N PLSPRSPHLFSN DSG+FDSRG NRKSNL TSGNN FEMKRSGE SSKLG
Sbjct: 241 SNGGRSSINAPLSPRSPHLFSNMDSGDFDSRGLNRKSNLWTSGNNVFEMKRSGEISSKLG 300

Query: 301 PSEDRYEHYGSPTKERGLHLNNFPQRFSQPSPFYDDPWDLPEDTNVYPGSKKLKTGPFPQ 360
           PS DRYEH GSPTKERG  LNNFPQRF QPSPFYDDPWDLPED N+Y GSKKLKTGPFPQ
Sbjct: 301 PSLDRYEH-GSPTKERGPPLNNFPQRFPQPSPFYDDPWDLPEDMNLYHGSKKLKTGPFPQ 360

Query: 361 DKELPEYPISDLEQDKRIIPKLYPDFPRSEAFDHKMKSGPPLGYKQ-PDQPMTMPDLYGE 420
           DKELPEYP+SDLEQDKRIIPKLYPDFP SE FD KMKSG PLGYKQ PD+P+TMP  YGE
Sbjct: 361 DKELPEYPLSDLEQDKRIIPKLYPDFPPSETFDKKMKSGLPLGYKQTPDRPITMPVSYGE 420

Query: 421 KSEHWREPYDNFQGPDSLPSNAVARKRLSPDPEQSSIKEWKWEGTIAKGGTPVCRARCFP 480
           KSEHWREPYDNFQ PD LP N VARKR SPD EQSS+KEWKWEGTIAKGGTPVCRARCFP
Sbjct: 421 KSEHWREPYDNFQDPDFLPPNDVARKRFSPDSEQSSVKEWKWEGTIAKGGTPVCRARCFP 480

Query: 481 VGKVLDMLLPEFLDCTARTGLDMLSKHYYEAASAWVVFFVPESDSDIVFYNEFMNYLGEK 540
           VGKVLD+LLPEFLDCTARTGLDMLSKHYYEAASAWVVFFVP+SDSDIVFYNEFM+YLGEK
Sbjct: 481 VGKVLDLLLPEFLDCTARTGLDMLSKHYYEAASAWVVFFVPQSDSDIVFYNEFMHYLGEK 540

Query: 541 QRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGKLSISGVILRLERPGTSARPPPYQNETKD 600
           QRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGKLSISGV+LRLERPG  ARPPPYQNETKD
Sbjct: 541 QRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGKLSISGVVLRLERPGAIARPPPYQNETKD 600

Query: 601 TNFLPLHSETSYTKLPPSPAVFTPIPPSLSDRSKSGINNASFPRNVATSASPVLFHGSSH 660
            N LPLHSET YTKLP  PA F P+ P LSD SKSGIN+   PRNVATSASPVLFHGS+ 
Sbjct: 601 ANLLPLHSETLYTKLPTPPARFGPVSP-LSDFSKSGINSTPLPRNVATSASPVLFHGSAQ 660

Query: 661 -VGNLSDPYVECRPDYPIQEQLNAMGPSSSSHHLQNSMVDFRNFQSQASNK--DPVIQER 720
             G+LSD YV+ R +YPIQ+Q NAMGP+++SHHLQNSM+D RN   Q SN   DP IQER
Sbjct: 661 SAGSLSDQYVDNRHEYPIQQQQNAMGPNATSHHLQNSMLDIRNIHPQPSNNSMDPAIQER 720

Query: 721 PLFIPREIQETGYSNYAVGISSVTTQQETKPAASLATTLSSLPPDQLAQLASSLLGHQRQ 780
            L   REI+ETG SNYA     ++TQQE KPAASLATTLSSLPPDQLAQLASSLLG QRQ
Sbjct: 721 HLVDLREIRETGSSNYA-----LSTQQEMKPAASLATTLSSLPPDQLAQLASSLLGQQRQ 780

Query: 781 SGSTPNAALHEELRQRNQVNESVVQLARSQNGSFQNNLMNSEPQTSQFVQVPQMHHVQQH 840
             +   A + EELRQRN VNESVV L+R  N  FQNNLMNSEPQTSQ VQVPQ+ HVQQH
Sbjct: 781 PANMSIATMTEELRQRNSVNESVVPLSRYPNVHFQNNLMNSEPQTSQIVQVPQIQHVQQH 840

Query: 841 QMSNQMSNVPAGQREIQTTGALGNNQQVQNSDVGGESEPDPQKRLQATLQLAAALLQQIH 900
           QM N        QRE+Q+     N+QQVQNSDV GE+E DPQKRLQATLQLAAALLQQI 
Sbjct: 841 QMLNATGGQLMAQREVQSEALGNNHQQVQNSDVRGEAEADPQKRLQATLQLAAALLQQIQ 898

Query: 901 QGKGS 902
           QGKG+
Sbjct: 901 QGKGN 898

[Close]

BLAST of Cp4.1LG05g13210.1 vs. NCBI nr
Match: gi|659094591|ref|XP_008448142.1| (PREDICTED: flowering time control protein FPA [Cucumis melo])

HSP 1 Score: 1420.6 bits (3676), Expect = 0.0e+00
Identity = 734/905 (81.10%), Postives = 788/905 (87.07%), Query Frame = 1


Query: 1   MSGRADGGRDRYRKDYSSRYDEKSQSGHSNSSNPPSRHLWIGNLSHVVVERDINRCFSQF 60
           MSGR DGGRDRYRKDY SR+DEK QSGHSNSSNPPSRHLW+GNL+HVVVERD++R FSQF
Sbjct: 1   MSGRVDGGRDRYRKDYMSRFDEKPQSGHSNSSNPPSRHLWVGNLAHVVVERDLSRYFSQF 60

Query: 61  GELDSIAFQPSRSYAFINFRRDEDAIAAMRELQGFALAGNPLRIEFAKADKPSASSRDEA 120
           GELDSIAFQPSRSYAFINF+RDEDA+AAMRELQGF+L GNP++IEF KADKPSASSRDE 
Sbjct: 61  GELDSIAFQPSRSYAFINFKRDEDAMAAMRELQGFSLGGNPIKIEFTKADKPSASSRDED 120

Query: 121 YSQHREDKYLGAKGSFSQGRHASPDEFYPEKSKMNDKNAEPSEVLWIGFPALLKVDEVIL 180
           YSQHRE+KY GA+GSFSQGRH SPD+FYPEKSKM+DKN EPSEVLWIGFPALLKVDE+IL
Sbjct: 121 YSQHREEKYYGARGSFSQGRHVSPDQFYPEKSKMSDKNTEPSEVLWIGFPALLKVDEMIL 180

Query: 181 RRAFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHICFAKSDSGS 240
           R+AFSPFGEIDKITTFPGRTYAFVRFRGV SAWRAKETLQGKLFGNPRVHICFAK+DSGS
Sbjct: 181 RKAFSPFGEIDKITTFPGRTYAFVRFRGVASAWRAKETLQGKLFGNPRVHICFAKNDSGS 240

Query: 241 SNSGRNTMNVPLSPRSPHLFSNFDSGEFDSRGFNRKSNLLTSGNNAFEMKRSGEFSSKLG 300
           SN GR+++N PLSPRSPHLFSN DSG+FDSRGFNRKSNL TSGNN FE+KRSGEFSSKLG
Sbjct: 241 SNGGRSSINAPLSPRSPHLFSNMDSGDFDSRGFNRKSNLWTSGNNGFEIKRSGEFSSKLG 300

Query: 301 PSEDRYEHYGSPTKERGLHLNNFPQRFSQPSPFYDDPWDLPEDTNVYPGSKKLKTGPFPQ 360
           PS DRYEH GSPTKERG  LNNFPQR  QPSPFYDDPWDLPED N+Y GSKKLKTG FPQ
Sbjct: 301 PSLDRYEH-GSPTKERG-PLNNFPQRLPQPSPFYDDPWDLPEDMNLYHGSKKLKTGAFPQ 360

Query: 361 DKELPEYPISDLEQDKRIIPKLYPDFPRSEAFDHKMKSGPPLGYKQ-PDQPMTMPDLYGE 420
           DKELPEYP+SDLEQDKRIIPKLYPDFP SE FD KMKSG PLGYKQ PD+P+TMP  YGE
Sbjct: 361 DKELPEYPLSDLEQDKRIIPKLYPDFPPSETFDKKMKSGLPLGYKQTPDRPITMPVSYGE 420

Query: 421 KSEHWREPYDNFQGPDSLPSNAVARKRLSPDPEQSSIKEWKWEGTIAKGGTPVCRARCFP 480
           KSEHWREPYDNFQ PD LP N VARKR SPD EQS++KEWKWEGTIAKGGTPVCRARCFP
Sbjct: 421 KSEHWREPYDNFQDPDFLPPNDVARKRFSPDSEQSTVKEWKWEGTIAKGGTPVCRARCFP 480

Query: 481 VGKVLDMLLPEFLDCTARTGLDMLSKHYYEAASAWVVFFVPESDSDIVFYNEFMNYLGEK 540
           VGKVLD+LLPEFLDCTARTGLDMLSKHYYEAASAWVVFFVPESDSDIV YNEFM+YLGEK
Sbjct: 481 VGKVLDILLPEFLDCTARTGLDMLSKHYYEAASAWVVFFVPESDSDIVLYNEFMHYLGEK 540

Query: 541 QRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGKLSISGVILRLERPGTSARPPPYQNETKD 600
           QRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGKLSISGV+LRLERPG   RPPPYQNETKD
Sbjct: 541 QRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGKLSISGVVLRLERPGAITRPPPYQNETKD 600

Query: 601 TNFLPLHSETSYTKLPPSPAVFTPIPPSLSDRSKSGINNASFPRNVATSASPVLFHGSSH 660
            N LPLHSET YTKLP  PA F P+ P LSD SKSGIN+   PRNVATSASPVLFHGS+ 
Sbjct: 601 ANLLPLHSETLYTKLPVPPARFGPVSP-LSDLSKSGINSTPLPRNVATSASPVLFHGSAQ 660

Query: 661 -VGNLSDPYVECRPDYPIQEQLNAMGPSSSSHHLQNSMVDFRNFQSQASNK--DPVIQER 720
             G+LSD YV+ R +Y IQ+Q NAMGP+SSS +LQNSM+D RN Q Q SN   D VIQER
Sbjct: 661 SAGSLSDQYVDNRHEYSIQQQ-NAMGPNSSSLNLQNSMLDIRNIQPQPSNNSMDSVIQER 720

Query: 721 PLFIPREIQETGYSNYAVGISSVTTQQETKPAASLATTLSSLPPDQLAQLASSLLGHQRQ 780
                REI+ETG SNY     +++TQQE KPAASLATTLSSLPPDQLAQLASSLLG QRQ
Sbjct: 721 HFVDLREIRETGSSNY-----TLSTQQEMKPAASLATTLSSLPPDQLAQLASSLLGQQRQ 780

Query: 781 SGSTPNAALHEELRQRNQVNESVVQLARSQNGSFQNNLMNSEPQTSQFVQVPQMHHVQQH 840
           + +  NA + EELRQRN VNESVV LAR QN  FQ NLMNSEPQTSQ VQ P + HVQQH
Sbjct: 781 TANMSNATMTEELRQRNSVNESVVPLARYQNVPFQINLMNSEPQTSQIVQAPHIQHVQQH 840

Query: 841 QMSNQMSNVPAGQREIQTTGALGNNQQVQNSDVGGESEPDPQKRLQATLQLAAALLQQIH 900
           QM N        QRE+QT     N+Q+VQNSDV GE+E DPQKRLQATLQLAAALLQQI 
Sbjct: 841 QMLNATGGQLMAQREVQTEALGNNHQEVQNSDVRGEAEADPQKRLQATLQLAAALLQQIQ 896

Query: 901 QGKGS 902
           QGKG+
Sbjct: 901 QGKGN 896

[Close]

BLAST of Cp4.1LG05g13210.1 vs. NCBI nr
Match: gi|743927989|ref|XP_011008186.1| (PREDICTED: flowering time control protein FPA [Populus euphratica])

HSP 1 Score: 931.0 bits (2405), Expect = 1.5e-267
Identity = 516/934 (55.25%), Postives = 652/934 (69.81%), Query Frame = 1


Query: 8   GRDRYRKDYSSRYDEKSQSGHSNSSNPPSRHLWIGNLSHVVVERDINRCFSQFGELDSIA 67
           GRDR+R+++SS   E S       +NPPSRHLW+GNLSH +VE D+   F QFG+LDS+A
Sbjct: 13  GRDRFRREFSSSRFESSSGNSKRGNNPPSRHLWVGNLSHSIVEADLTDEFLQFGDLDSVA 72

Query: 68  FQPSRSYAFINFRRDEDAIAAMRELQGFALAGNPLRIEFAKADKPSASSRDEAYSQHRED 127
           FQP RSYAF+NF ++EDAIAA++ LQG+ LAGNPLRIEFAKADK S  S DE Y Q R++
Sbjct: 73  FQPGRSYAFVNFNKEEDAIAAIKSLQGYPLAGNPLRIEFAKADKSSTPSHDEDYLQRRDE 132

Query: 128 KYLGAKGS-----FSQGRHASPDEFYPEKSKMNDKNAEPSEVLWIGFPALLKVDEVILRR 187
           + L  +GS      S+ R+ASP+ FYP+KSKM+D +AEPSEVLWIGFPALLKVDE+ILR+
Sbjct: 133 QRLTLRGSPFLQRDSRARNASPETFYPDKSKMSDSSAEPSEVLWIGFPALLKVDEMILRK 192

Query: 188 AFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHICFAKSDSGSSN 247
           AFSPFGEI+KIT FPGR+YAFVRF  +TSA RAKETLQGKLFGNPRVHICFAK+++GSSN
Sbjct: 193 AFSPFGEIEKITVFPGRSYAFVRFTNLTSACRAKETLQGKLFGNPRVHICFAKNEAGSSN 252

Query: 248 SGRNTMNVPLSP-----------------------RSPHLFSNFDSGEFDSRGFNRKSNL 307
           SGR  ++    P                       RSPH  S+ D    D  G NRK  L
Sbjct: 253 SGRTPLSPHYKPNSRQGGPENFRQDRDFGTADPSIRSPHFNSDLDPAGSDVYGLNRKGTL 312

Query: 308 LTSGNNAFEMKRSGEFSSKLGPSEDRYEHYGSPTKERGLHLNNFPQRFSQPSPFYDDPWD 367
              GN AF+  R GE   +LGP  D YE  GSPT+ R  H + F ++  Q  PFY++PWD
Sbjct: 313 HHVGNGAFDNWRFGE---ELGPPPDVYERLGSPTRGRDAHFHEFVKKNPQKGPFYEEPWD 372

Query: 368 LPEDTNVYPGSKKLKTGPFPQDKELPEYPISDLEQDKRIIPKLYPDFPRSEAFDHKMKSG 427
           LPED+ +Y  +KKLKTG FP DKELPEYP SDLEQ++R  P+ + DFP+ EAFD  +++G
Sbjct: 373 LPEDSYLYHEAKKLKTGSFPPDKELPEYPYSDLEQERRAFPRAFSDFPQPEAFDKNLEAG 432

Query: 428 PPLGYKQ-PDQPMTMPDLYGEKSEHWREPYDNFQ-GPDSLPSNAVARKRLSPDPEQSSIK 487
           P  GY    D+P+ +   +GE+++ W+  YDNFQ G  SLP+N   RKR +P+PE SS+K
Sbjct: 433 P-FGYTPIQDRPINLSLPHGERNDPWKVSYDNFQAGSGSLPANRAERKRFTPEPEPSSLK 492

Query: 488 EWKWEGTIAKGGTPVCRARCFPVGKVLDMLLPEFLDCTARTGLDMLSKHYYEAASAWVVF 547
            WKWEGTIAKGGTPVC ARCFPVGK LD +LP+FLDCTARTGLDML+KHYY+AASAWVVF
Sbjct: 493 LWKWEGTIAKGGTPVCHARCFPVGKALDFMLPDFLDCTARTGLDMLAKHYYQAASAWVVF 552

Query: 548 FVPESDSDIVFYNEFMNYLGEKQRAAVSKLDDRTTLFLVPPSEFSEKVLKVPGKLSISGV 607
           FVP SD+D+ +YNE M+YL EKQRAAV+KLDD+TTLFLVPPS+FSEKVL+VPGKLSISGV
Sbjct: 553 FVPASDADMGYYNELMHYLEEKQRAAVAKLDDKTTLFLVPPSDFSEKVLRVPGKLSISGV 612

Query: 608 ILRLERPGTSARPPPYQNETKDTNFLPLHSETSYTKLPPSPAVFTPIPPSLSDRSKSGIN 667
           ILRLE  G++  P  + NE +D N LP H + SY K PP+ +   P   S SD S+SG  
Sbjct: 613 ILRLENSGSNLGPLHHPNEKRDMNILPFHRDPSYPK-PPTHSGQFPAMVSFSDLSRSG-G 672

Query: 668 NASFPRNVATSASPVLFHGSSH-VGNLSDPYVECRPDYPIQEQLNAMGPSSSSHHLQNSM 727
           + +F  NVA++A PV F G +H  G++SD Y E R  Y +Q+Q + + P+ S HH Q+ +
Sbjct: 673 DPAFLGNVASTAPPVAFSGPAHPAGSISDSYNENRHHYHLQQQNSTLRPNWSPHHSQSIV 732

Query: 728 VDFRNFQSQASNK--DPVIQERPLFIPREIQETGYSNYAVGIS-------SVTTQQETKP 787
              RN  SQA+N   DPVI +    +PR +QE G +++A G+S       S +T QETKP
Sbjct: 733 SGNRNVPSQAANTAVDPVIPDHHPVLPRTVQENGPTHFASGMSTNPLSGNSKSTFQETKP 792

Query: 788 AASLATTLSSLPPDQLAQLASSLLGHQRQSGSTPNAALHEELRQRNQVNESVVQLARSQN 847
           +  ++  ++ L P QLAQLASSLLG QR SG+  N +  E+ +    VN+S  Q+  +Q 
Sbjct: 793 SVPVSLPIAGLQPQQLAQLASSLLGQQRVSGNNSNGSASEDFKP--TVNQSDNQVGIAQA 852

Query: 848 GSFQNNLMNSEPQTSQFVQVPQMHHVQQHQMSNQMSNVPAGQREIQTTGALGNNQQVQNS 902
                N + SE  TSQF Q+ QM   QQ Q+SN  ++VP   R+    GA G NQ++Q++
Sbjct: 853 HGLHKNQVGSEIPTSQFSQLQQM---QQQQVSNVPTSVPPPVRKDLQPGAQG-NQRMQSA 912

[Close]

BLAST of Cp4.1LG05g13210.1 vs. NCBI nr
Match: gi|645247272|ref|XP_008229757.1| (PREDICTED: flowering time control protein FPA [Prunus mume])

HSP 1 Score: 930.6 bits (2404), Expect = 2.0e-267
Identity = 527/950 (55.47%), Postives = 650/950 (68.42%), Query Frame = 1


Query: 1   MSGRADGGRDRYRKDYSS---------RYDEKSQSGHSNSSNPPSRHLWIGNLSHVVVER 60
           M+GR  GGRDR+R ++           R+D K      N   PPSRHLW+GNLSH ++E 
Sbjct: 1   MTGRGGGGRDRFRMEHPENRGGGGGPRRFDSK------NGKAPPSRHLWVGNLSHSIMEN 60

Query: 61  DINRCFSQFGELDSIAFQPSRSYAFINFRRDEDAIAAMRELQGFALAGNPLRIEFAKADK 120
           D+   F QFGEL+S+AFQP RSYAF+NF+R+++AIAAM  LQGF +AGNPLRIEF KADK
Sbjct: 61  DLTEHFLQFGELESVAFQPGRSYAFLNFKREDEAIAAMESLQGFPVAGNPLRIEFTKADK 120

Query: 121 PSASSRDEAYSQHREDKYLGAKGS-----FSQGRHASPDEFYPEKSKMNDKNAEPSEVLW 180
            SA SRDE YSQ R+++    +GS      S+ R ASP++FY EKS MNDKNAEPS VLW
Sbjct: 121 SSAPSRDEDYSQRRDEQRSALRGSPFLQRESRARQASPEQFYQEKSNMNDKNAEPSAVLW 180

Query: 181 IGFPALLKVDEVILRRAFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGN 240
           IGFPALLKVDE+IL++AFSPFGEI+KIT FPGR+YAFVRFR V SA RAK+ LQGKLFGN
Sbjct: 181 IGFPALLKVDELILKKAFSPFGEIEKITAFPGRSYAFVRFRSVMSACRAKDALQGKLFGN 240

Query: 241 PRVHICFAKSDSGSSNSGRNTMNVPLSP-----------------------------RSP 300
           PRVHICFAKS++GSSNSGRN MNVP SP                             RSP
Sbjct: 241 PRVHICFAKSETGSSNSGRNLMNVPPSPHFKGNDRSGSPENFREESKFGSLTGNPSIRSP 300

Query: 301 HLFSNFDSGEFDSRGFNRKSNLLTSGNNAFEMKRSGEFSSKLGPSEDRYEHYGSPTKERG 360
             F + D+G+ D    N+K NL T  NN F+ +R GE  S+LG SED Y+H GSP +E+ 
Sbjct: 301 QYFPDLDAGDSDPYSLNKKGNLWTGENNTFD-QRFGEMGSELGLSEDTYDHRGSPKREKY 360

Query: 361 LHLNNFPQRFSQPSPFYDDPWDLPEDTNVYPGSKKLKTGPFPQDKELPEYPISDLEQDKR 420
            HL+N+ QRF Q S  Y++PWDLPED + + G+KKLKT  F  D+ELPEY +SD EQ++ 
Sbjct: 361 AHLHNYSQRFPQTSQPYEEPWDLPEDIHFHHGAKKLKTESFLPDRELPEYALSDFEQERH 420

Query: 421 IIPKLYPDFPRSEAFDHKMKSGPPLGYKQ-PDQPMTMPDLYGEKSEHWREPYDNFQ-GPD 480
             P+ Y DFP+S++     ++GP  G KQ P++PM      G++ + W+E YDNFQ    
Sbjct: 421 GFPRSYSDFPQSDSSKRNFEAGP-FGCKQIPERPMNFALPPGQRGDRWKESYDNFQVNSG 480

Query: 481 SLPSNAVARKRLSPDPEQSSIKEWKWEGTIAKGGTPVCRARCFPVGKVLDMLLPEFLDCT 540
           S  +N V R+R +P+P+QSS   WKWEGTIAKGGTPVCRARCFPVGKVLDM+LPEFLDCT
Sbjct: 481 SQLANPVDRRRFTPEPDQSSFNVWKWEGTIAKGGTPVCRARCFPVGKVLDMILPEFLDCT 540

Query: 541 ARTGLDMLSKHYYEAASAWVVFFVPESDSDIVFYNEFMNYLGEKQRAAVSKLDDRTTLFL 600
           ARTGLDMLSKHYY+AASAWVVFFVPESD+DI +YNEFM+YLGEKQRAAV+KLDD+ TLFL
Sbjct: 541 ARTGLDMLSKHYYQAASAWVVFFVPESDADIGYYNEFMHYLGEKQRAAVAKLDDKNTLFL 600

Query: 601 VPPSEFSEKVLKVPGKLSISGVILRLERPGTSARPPPYQNETKDTNFLPLHSETSYTKLP 660
           VPPS+FSEKVLKVPGKLSISGV+LRLE P ++      Q+E KD   L    + SYT  P
Sbjct: 601 VPPSDFSEKVLKVPGKLSISGVVLRLEHPSSNFGSHHQQHERKDRRLLSFPGDASYTN-P 660

Query: 661 PSPAVFTPIPPSLSDRSKSGINNASFPRNVATSASPVLFHGSSH-VGNLSDPYVECRPDY 720
            +P+       SL D SK G +N SF  N+ TSA P  + GS+H VGN S+ Y E R DY
Sbjct: 661 STPSESIHPFTSLPDSSKPGGSNLSFLGNLITSAPPASYSGSAHGVGNGSESYNENRHDY 720

Query: 721 PIQEQLNAMGPSSSSHHLQNSMVDFRNFQSQASN--KDPVIQERPLFIPREIQETGYSNY 780
           P+ +    +GP+ SSHHLQNS+   RN  +Q S+   DP+ Q+  + + R +QE   S+ 
Sbjct: 721 PLHKGSPTLGPNWSSHHLQNSVSGSRNRPTQMSSIAVDPIHQDHRI-MQRAVQE---SST 780

Query: 781 AVGISSVTTQQETKPAASLATTLSSLPPDQLAQLASSLLGHQRQSGSTPNAALHEELRQR 840
           A GIS +     +      + +L++L PDQLAQLASSLLG QRQ GSTPN    E+ RQR
Sbjct: 781 AGGISHIRNSSSSLHETQSSPSLAALQPDQLAQLASSLLGQQRQPGSTPNPYTREDFRQR 840

Query: 841 NQVNESVVQLARSQNGSFQNNLMNSEPQTSQFVQVPQMHHVQQHQMSNQMSNVPAGQREI 900
           N +NES      SQ    QNN ++SE  TSQF QV ++  +QQ Q+S   +    GQRE+
Sbjct: 841 NTMNESDNLPRTSQRFGLQNNQVSSESSTSQFGQVQELQQLQQ-QVSTVSAMPHMGQREL 900

Query: 901 QTTGALGNNQQVQNSDVGGESEPDPQK-RLQATLQLAAALLQQIHQGKGS 902
           Q    +  NQQ+Q+       E DPQK R+QATLQLAAALLQQI  GKGS
Sbjct: 901 QAV--VQGNQQLQSISSNEAVETDPQKQRMQATLQLAAALLQQIQGGKGS 934

[Close]

BLAST of Cp4.1LG05g13210.1 vs. NCBI nr
Match: gi|731410307|ref|XP_010657507.1| (PREDICTED: flowering time control protein FPA [Vitis vinifera])

HSP 1 Score: 921.0 bits (2379), Expect = 1.6e-264
Identity = 520/949 (54.79%), Postives = 652/949 (68.70%), Query Frame = 1


Query: 1   MSGRADGGRDRYRKDYSSRYDEKSQSGHSNSSNPPSRHLWIGNLSHVVVERDINRCFSQF 60
           M+GR  G R+R+R+DY  R++EKS SG S  S+PPSRHLW+GNLSH + E  +   F QF
Sbjct: 1   MTGR--GARERFRRDYPPRFEEKSHSGRS--SHPPSRHLWVGNLSHSISENTLTDPFLQF 60

Query: 61  GELDSIAFQPSRSYAFINFRRDEDAIAAMRELQGFALAGNPLRIEFAKADKPSASSRDEA 120
           GELD++AFQP RSYAFINF+++EDAI AMR LQGF++AG PL+IEFAKA+K S +SRDE 
Sbjct: 61  GELDTVAFQPGRSYAFINFKQEEDAIHAMRSLQGFSVAGMPLKIEFAKAEKSSTASRDED 120

Query: 121 YSQHREDKYLGAKGS-FSQG----RHASPDEFYPEKSKMNDKNAEPSEVLWIGFPALLKV 180
           Y Q R+++    +GS FSQ     RH SPD FYP+KS ++D+  EP EVLWIGFP+LLKV
Sbjct: 121 YLQRRDEQRSTIRGSPFSQRDSRTRHGSPDTFYPDKSSISDRKGEPCEVLWIGFPSLLKV 180

Query: 181 DEVILRRAFSPFGEIDKITTFPGRTYAFVRFRGVTSAWRAKETLQGKLFGNPRVHICFAK 240
           DE ILR+AFSPFGEI+KIT+FPGR+YAFV+FR VT+A RAKETLQGKLFGNPRVHICFAK
Sbjct: 181 DETILRKAFSPFGEIEKITSFPGRSYAFVQFRSVTAACRAKETLQGKLFGNPRVHICFAK 240

Query: 241 SDSGSSNSGRNTMNVPLSP-----------------------------RSPHLFSNFDSG 300
           S+ G SN GRNTMN P SP                             RSP   SN ++ 
Sbjct: 241 SEPGPSNGGRNTMNAPPSPHFQSNSRPGSSENFRQERNFGNFPGDPSVRSPRFISNLETE 300

Query: 301 EFDSRGFNRKSNLLTSGNNAFEMKRSGEFSSKLGPSEDRYEHYGSPTKERGLHLNNF-PQ 360
           + D   F RKS L T GN  FE +R  +  S+LG S D YEH+ SPT++R  H  +F PQ
Sbjct: 301 DSDVIDFGRKSTLWTDGNGTFEHRRFRDMGSELGASADVYEHHSSPTRDRVAHFRDFSPQ 360

Query: 361 RFSQPSPFYDDPWDLPEDTNVYPGSKKLKTGPFPQDKELPEYPISDLEQDKRIIPKLYPD 420
           +F + SPFY+DPWDLPED  ++ G+KKLKTG FP +KELPEYP S  EQ+K ++P+++ D
Sbjct: 361 KFPRRSPFYEDPWDLPEDAYLFHGAKKLKTGSFPPEKELPEYPFSVAEQEKHLLPRIFSD 420

Query: 421 FPRSEAFDHKMKSGPPLGYKQ-PDQPMTMPDLYGEKSEHWREPYDNFQ-GPDSLPSNAVA 480
           +P+ EA D   + G   GYKQ  D PM +   +GE SE W+  YD FQ G  SL SN V 
Sbjct: 421 YPQPEAIDKNYEPG-SFGYKQMSDHPMNLTRPHGEMSEQWKASYDGFQVGSGSLSSNPVD 480

Query: 481 RKRLSPDPEQSSIK-EWKWEGTIAKGGTPVCRARCFPVGKVLDMLLPEFLDCTARTGLDM 540
            KRL+P+   SS+  EWKWEGTIAKGG+ +CRARCFPVGKV+D++LPEFLDCTARTGLDM
Sbjct: 481 WKRLTPESHPSSLSGEWKWEGTIAKGGSSICRARCFPVGKVMDIMLPEFLDCTARTGLDM 540

Query: 541 LSKHYYEAASAWVVFFVPESDSDIVFYNEFMNYLGEKQRAAVSKLDDRTTLFLVPPSEFS 600
           L+KHYY+AASAWVVFFVPESD+DI +YNEFMNYLGEKQRAAV+KLD+RTTLFLVPPSEFS
Sbjct: 541 LAKHYYQAASAWVVFFVPESDADIGYYNEFMNYLGEKQRAAVAKLDERTTLFLVPPSEFS 600

Query: 601 EKVLKVPGKLSISGVILRLERPGTSARPPPYQNETKDTNFLPLHSETSYTKLPPSPAVFT 660
           EKVLKVPGKLSISGV+LRLE PG++       ++ +  +F+  H +T Y K P SP+   
Sbjct: 601 EKVLKVPGKLSISGVVLRLENPGSNFGS---LDQPQAPSFMSFHGDTQYPK-PTSPSGLF 660

Query: 661 PIPPSLSDRSKSGINNASFPRNVATSASPVLFHGSSH-VGNLSDPYVECRPDYPIQEQLN 720
           P   S  +  KSG++N S+  NV TSA P  F GS+H VG  S+   E  P+Y + ++  
Sbjct: 661 PPMASFPNFGKSGVSNVSYTGNVPTSAPPTSFSGSAHAVGGASNSINENSPEYLLHQRNP 720

Query: 721 AMGPSSSSHHLQNSMVDFRNFQSQASNK--DPVIQERPLFIPREIQETGYSNYAVGISSV 780
           ++GP+ S HHLQNS+   RN   QA+N   D ++Q+    + + +Q TG S+Y  G S +
Sbjct: 721 SLGPNWSPHHLQNSISGTRNVPLQATNSAVDTMVQDYQSIMQKAVQGTGSSHYQTGNSGI 780

Query: 781 TTQ-------QETKPAASLATTLSSLPPDQLAQLASSLLGHQRQSGSTPNAALHEELRQR 840
                     QE KP+ SL   + SL P+QLAQLASSLLG QRQSGS+  +   E+ RQ 
Sbjct: 781 PLSGSSKLPLQEIKPSVSLPMPV-SLQPEQLAQLASSLLGQQRQSGSSMLSG-GEDFRQP 840

Query: 841 NQVNESVVQLARSQNGSFQNNLMNSEPQTSQFVQVPQMHHVQQHQMSNQMSNVPAGQREI 900
           N +N        +Q  + QN+ +++E  TSQF QV Q    QQ Q  N         RE+
Sbjct: 841 NTMNPPENPFRTAQKYALQNHQVSTELSTSQFGQVQQ----QQQQTPNVPVMPHTSHREV 900

Query: 901 QTTGALGNNQQVQNSDVGGESEPDPQKRLQATLQLAAALLQQIHQGKGS 902
           QT   +  NQ +Q+++   E E DPQKRLQATLQLAAALLQQI QGKG+
Sbjct: 901 QT--GVQGNQPLQSTETQEEVEADPQKRLQATLQLAAALLQQIQQGKGT 932

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g13210.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FPA_ARATH	3.2e-31	28.97	Flowering time control protein FPA OS=Arabidopsis thaliana GN=FPA PE=2 SV=2	[more]
TIA1_HUMAN	1.2e-09	27.49	Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3	[more]
TIA1_MOUSE	1.6e-09	27.49	Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1	[more]
RU2B_MOUSE	7.7e-09	26.13	U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2 PE=1 SV=1	[more]
RU2B_HUMAN	1.0e-08	25.89	U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2 PE=1 SV=1	[more]

BLAST of Cp4.1LG05g13210.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KA84_CUCSA	0.0e+00	81.66	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G115600 PE=4 SV=1	[more]
A0A067L9N1_JATCU	1.6e-258	54.36	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15026 PE=4 SV=1	[more]
B9SEZ1_RICCO	1.3e-257	55.10	RNA binding protein, putative OS=Ricinus communis GN=RCOM_1211420 PE=4 SV=1	[more]
A0A059VC50_9ROSI	1.4e-251	53.31	Flowering time control protein FPA1 OS=Dimocarpus longan GN=FPA1 PE=2 SV=1	[more]
B9IAX2_POPTR	4.3e-248	52.42	RNA recognition motif containing family protein OS=Populus trichocarpa GN=POPTR_...	[more]

BLAST of Cp4.1LG05g13210.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G12640.1	3.6e-174	43.83	RNA recognition motif (RRM)-containing protein	[more]
AT2G43410.2	1.8e-32	28.97	RNA binding	[more]
AT3G08000.1	9.1e-08	37.65	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G71800.1	6.5e-06	27.08	cleavage stimulating factor 64	[more]

BLAST of Cp4.1LG05g13210.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449444608\|ref\|XP_004140066.1\|	0.0e+00	81.66	PREDICTED: flowering time control protein FPA [Cucumis sativus]	[more]
gi\|659094591\|ref\|XP_008448142.1\|	0.0e+00	81.10	PREDICTED: flowering time control protein FPA [Cucumis melo]	[more]
gi\|743927989\|ref\|XP_011008186.1\|	1.5e-267	55.25	PREDICTED: flowering time control protein FPA [Populus euphratica]	[more]
gi\|645247272\|ref\|XP_008229757.1\|	2.0e-267	55.47	PREDICTED: flowering time control protein FPA [Prunus mume]	[more]
gi\|731410307\|ref\|XP_010657507.1\|	1.6e-264	54.79	PREDICTED: flowering time control protein FPA [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0000166	nucleotide binding
GO:0003676	nucleic acid binding

Vocabulary: **INTERPRO**
Term	Definition
IPR012921	SPOC_C
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR000504	RRM_dom

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG05g13210	Cp4.1LG05g13210	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g13210.1	Cp4.1LG05g13210.1-protein	polypeptide

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g13210.1:five_prime_utr:001	Cp4.1LG05g13210.1:five_prime_utr:001	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g13210.1:cds:001	Cp4.1LG05g13210.1:cds:001	CDS
Cp4.1LG05g13210.1:cds:002	Cp4.1LG05g13210.1:cds:002	CDS
Cp4.1LG05g13210.1:cds:003	Cp4.1LG05g13210.1:cds:003	CDS
Cp4.1LG05g13210.1:cds:004	Cp4.1LG05g13210.1:cds:004	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g13210.1:three_prime_utr:001	Cp4.1LG05g13210.1:three_prime_utr:001	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 176..228 score: 1.8E-6coord: 39..103 score: 3.3
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 164..232 score: 2.8E-4coord: 38..105 score: 8.7
IPR000504	RNA recognition motif domain	PROFILE	PS50102	RRM	coord: 37..109 score: 15.528coord: 162..236 score: 10
IPR012677	Nucleotide-binding alpha-beta plait domain	GENE3D	G3DSA:3.30.70.330		coord: 26..108 score: 8.5E-20coord: 151..240 score: 4.8
IPR012677	Nucleotide-binding alpha-beta plait domain	unknown	SSF54928	RNA-binding domain, RBD	coord: 24..115 score: 4.43E-20coord: 174..238 score: 6.99
IPR012921	Spen paralogue and orthologue SPOC, C-terminal	PFAM	PF07744	SPOC	coord: 461..557 score: 1.
None	No IPR available	PANTHER	PTHR23189	RNA RECOGNITION MOTIF-CONTAINING	coord: 160..583 score: 1.4E-101coord: 33..109 score: 1.4E
None	No IPR available	PANTHER	PTHR23189:SF41	BCDNA.GH11110	coord: 160..583 score: 1.4E-101coord: 33..109 score: 1.4E