Cp4.1LG05g12310.1 (mRNA) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG05g12310.1
Type	mRNA
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Transmembrane protein, putative
Location	Cp4.1LG05 : 8569231 .. 8569566 (-)
Sequence length	336

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCATTGCCACAGCTGAGACGATGCCCCGACAAGCTGCCTCGAGCCATGTTGGTGCCGATGTGCCATTCGGCCCCGTCATTGCTGTCCTTGTAGTCATTGTGATTCTCGGCACCGTAGCCGGGATTATCGGGAGGCTTTTCTCAGGTCGTCGTGTTGTTGGCGGTGGTCAGTATGACGTTGAAGGATGGGTTGAGAAGAAATGCTCATCTTGTTTGGATGGCAAGGTTGACGACGTTCCACCGTCGAGGCCTCCACGGTCGGCCACGGTGGGAGGTGATGTTCCTGTGGCAATGCCAATTCTGCCGGAGATAAAAGAAGAACAAGGGCATTGA

mRNA sequence

ATGTCCATTGCCACAGCTGAGACGATGCCCCGACAAGCTGCCTCGAGCCATGTTGGTGCCGATGTGCCATTCGGCCCCGTCATTGCTGTCCTTGTAGTCATTGTGATTCTCGGCACCGTAGCCGGGATTATCGGGAGGCTTTTCTCAGGTCGTCGTGTTGTTGGCGGTGGTCAGTATGACGTTGAAGGATGGGTTGAGAAGAAATGCTCATCTTGTTTGGATGGCAAGGTTGACGACGTTCCACCGTCGAGGCCTCCACGGTCGGCCACGGTGGGAGGTGATGTTCCTGTGGCAATGCCAATTCTGCCGGAGATAAAAGAAGAACAAGGGCATTGA

Coding sequence (CDS)

ATGTCCATTGCCACAGCTGAGACGATGCCCCGACAAGCTGCCTCGAGCCATGTTGGTGCCGATGTGCCATTCGGCCCCGTCATTGCTGTCCTTGTAGTCATTGTGATTCTCGGCACCGTAGCCGGGATTATCGGGAGGCTTTTCTCAGGTCGTCGTGTTGTTGGCGGTGGTCAGTATGACGTTGAAGGATGGGTTGAGAAGAAATGCTCATCTTGTTTGGATGGCAAGGTTGACGACGTTCCACCGTCGAGGCCTCCACGGTCGGCCACGGTGGGAGGTGATGTTCCTGTGGCAATGCCAATTCTGCCGGAGATAAAAGAAGAACAAGGGCATTGA

Protein sequence

MSIATAETMPRQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCSSCLDGKVDDVPPSRPPRSATVGGDVPVAMPILPEIKEEQGH

Homology

[Close]

BLAST of Cp4.1LG05g12310.1 vs. TrEMBL
Match: U5GFK7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s15180g PE=4 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.7e-19
Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 1


Query: 11  RQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCS 70
           +QAA +H G     GPVIAVL VI ILG +AG+IGRL SGRR++G GQYD EGWVE+KCS
Sbjct: 25  QQAAYTHTGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRRILGHGQYDFEGWVERKCS 84

Query: 71  SCLDGKVDDVPPSRPPRSATVGGDVPVAMPIL----PEIKEEQ 110
           SCLDG VD  PP+R         D+PVA P++     EIKEE+
Sbjct: 85  SCLDGHVDP-PPTR-------HADIPVAAPVVEEGPQEIKEEE 118

[Close]

BLAST of Cp4.1LG05g12310.1 vs. TrEMBL
Match: B9S776_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0774210 PE=4 SV=1)

HSP 1 Score: 102.4 bits (254), Expect = 3.5e-19
Identity = 59/100 (59.00%), Postives = 71/100 (71.00%), Query Frame = 1


Query: 11  RQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCS 70
           +QA ++H G     GPVIAVL VI ILG +AG+IGRL SGRRV+G GQYD EGWVE+KCS
Sbjct: 19  QQAYTAHTGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRRVMGHGQYDFEGWVERKCS 78

Query: 71  SCLDGKVDDVPPSRPPRSATVGGDVPVAMPILPEIKEEQG 111
           SCLDG+VD  PP+RP        D+PVA P+     EE+G
Sbjct: 79  SCLDGRVDP-PPTRP-------ADIPVAEPV-----EEEG 104

[Close]

BLAST of Cp4.1LG05g12310.1 vs. TrEMBL
Match: A5BS04_VITVI (Peroxidase OS=Vitis vinifera GN=VITISV_035943 PE=3 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.0e-19
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 1


Query: 9   MPRQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKK 68
           + +QA ++H G     GPVIAVL VI ILG +AG+IGRL SGRR++G GQYDVEGWVE+K
Sbjct: 827 LTQQAYTAHSGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRRIMGHGQYDVEGWVERK 886

Query: 69  CSSCLDGKVDDVPPSRPPRSAT---VGGDVPVA--MPILPEIK-EEQGH 112
           CSSC+DG+VD  PP RPP + T    G   P A       EIK EEQ H
Sbjct: 887 CSSCIDGRVD--PPPRPPPAPTSYSPGESAPPADSSETAQEIKQEEQSH 932

[Close]

BLAST of Cp4.1LG05g12310.1 vs. TrEMBL
Match: A0A067KPY1_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04879 PE=4 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.1e-18
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 1


Query: 11  RQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCS 70
           +Q  ++H G     GP IAVL VI ILG +AG++GRL SGRR++G GQYD EGWVE+KCS
Sbjct: 17  QQVYTAHTGHG-SVGPFIAVLAVITILGVLAGMVGRLCSGRRIMGHGQYDFEGWVERKCS 76

Query: 71  SCLDGKVDDVPPSRPPRSATVGGDVPVAMPI----LPEIKEEQ 110
           SCLDG+VD  PP  PP       D+PVA P+      EIKEE+
Sbjct: 77  SCLDGRVD--PPPAPP------ADIPVAEPLEETGPQEIKEEE 110

[Close]

BLAST of Cp4.1LG05g12310.1 vs. TrEMBL
Match: B9HRW7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s10950g PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.5e-17
Identity = 57/103 (55.34%), Postives = 70/103 (67.96%), Query Frame = 1


Query: 11  RQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCS 70
           +QAA +   +    GPVIAVL VI ILG +AG+IGR  SGRRV+G GQYD+EGWVE+KCS
Sbjct: 5   QQAAYTTRTSHGSVGPVIAVLAVITILGVIAGMIGRFCSGRRVLGHGQYDLEGWVERKCS 64

Query: 71  SCLDGKVDDVPPSRPPRSATVGGDVPVAMPIL----PEIKEEQ 110
           SCLDG V   PP+RP        D+PVA P++     E KEE+
Sbjct: 65  SCLDGHVGP-PPTRP-------ADIPVAFPVVKGRPQETKEEK 99

[Close]

BLAST of Cp4.1LG05g12310.1 vs. TAIR10
Match: AT2G26520.1 (AT2G26520.1 unknown protein)

HSP 1 Score: 66.2 bits (160), Expect = 1.4e-11
Identity = 37/106 (34.91%), Postives = 56/106 (52.83%), Query Frame = 1


Query: 6   AETMPRQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWV 65
           A  + + ++S     +   GP IAV +V+ +L  +A +IGRL SG+ ++G G YD+E W 
Sbjct: 13  ATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILGYGDYDMERWA 72

Query: 66  EKKCSSCLDGKVDDVPPSRPPRSATVGGDVPVAMPILPEIKEEQGH 112
           E +C SC+DG +    P RP  S T     P+         E +GH
Sbjct: 73  ESRCGSCIDGHIH---PHRPSPSPTPPPRQPLHHTSSGVSAESEGH 115

[Close]

BLAST of Cp4.1LG05g12310.1 vs. TAIR10
Match: AT3G57500.1 (AT3G57500.1 unknown protein)

HSP 1 Score: 63.9 bits (154), Expect = 7.0e-11
Identity = 35/86 (40.70%), Postives = 46/86 (53.49%), Query Frame = 1


Query: 10  PRQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKC 69
           P Q   SH         ++ VL VI IL  +AG+  RL  GR +  GG +D+EGWVE+KC
Sbjct: 24  PSQDQPSHNSDHRSIETLVVVLAVITILSVLAGVFARLCGGRHLSHGGDHDIEGWVERKC 83

Query: 70  SSCLDGKVDDV------PPSRPPRSA 90
            SC+D  +  V      PP  PP +A
Sbjct: 84  RSCIDAGIPAVSAAPSPPPPPPPATA 109

[Close]

BLAST of Cp4.1LG05g12310.1 vs. NCBI nr
Match: gi|1009115432|ref|XP_015874226.1| (PREDICTED: transcription factor RBF1-like [Ziziphus jujuba])

HSP 1 Score: 112.8 bits (281), Expect = 3.7e-22
Identity = 62/103 (60.19%), Postives = 75/103 (72.82%), Query Frame = 1


Query: 9   MPRQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKK 68
           M +QA ++H G     GPVIAVL VI ILG +AG+IGRL SGR ++G GQYD E WVE+K
Sbjct: 15  MTQQAYTTHSGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRPIMGHGQYDFEAWVERK 74

Query: 69  CSSCLDGKVDDVPPSRPPRSATVGGDVPVAMP--ILPEIKEEQ 110
           CS+CLDG+VD  PP   P + T GG+VPVAMP  I  EIKEE+
Sbjct: 75  CSTCLDGRVDPPPPPPRPPANTSGGEVPVAMPVEIQQEIKEEE 116

[Close]

BLAST of Cp4.1LG05g12310.1 vs. NCBI nr
Match: gi|743914551|ref|XP_011001206.1| (PREDICTED: uncharacterized protein LOC105108559 [Populus euphratica])

HSP 1 Score: 104.8 bits (260), Expect = 1.0e-19
Identity = 61/103 (59.22%), Postives = 73/103 (70.87%), Query Frame = 1


Query: 11  RQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCS 70
           +QAA +H G     GPVIAVL VI ILG +AG+IGRL SGRR++G GQYD EGWVE+KCS
Sbjct: 20  QQAAYTHNGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRRILGHGQYDFEGWVERKCS 79

Query: 71  SCLDGKVDDVPPSRPPRSATVGGDVPVAMPIL----PEIKEEQ 110
           SCLDG VD  PP+R         D+PVA P++    PEIKEE+
Sbjct: 80  SCLDGHVDP-PPAR-------HADIPVAAPVVEEVPPEIKEEE 113

[Close]

BLAST of Cp4.1LG05g12310.1 vs. NCBI nr
Match: gi|566166639|ref|XP_006384448.1| (hypothetical protein POPTR_0004s15180g [Populus trichocarpa])

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-19
Identity = 60/103 (58.25%), Postives = 72/103 (69.90%), Query Frame = 1


Query: 11  RQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCS 70
           +QAA +H G     GPVIAVL VI ILG +AG+IGRL SGRR++G GQYD EGWVE+KCS
Sbjct: 25  QQAAYTHTGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRRILGHGQYDFEGWVERKCS 84

Query: 71  SCLDGKVDDVPPSRPPRSATVGGDVPVAMPIL----PEIKEEQ 110
           SCLDG VD  PP+R         D+PVA P++     EIKEE+
Sbjct: 85  SCLDGHVDP-PPTR-------HADIPVAAPVVEEGPQEIKEEE 118

[Close]

BLAST of Cp4.1LG05g12310.1 vs. NCBI nr
Match: gi|255561671|ref|XP_002521845.1| (PREDICTED: uncharacterized protein LOC8283273 [Ricinus communis])

HSP 1 Score: 102.4 bits (254), Expect = 5.0e-19
Identity = 59/100 (59.00%), Postives = 71/100 (71.00%), Query Frame = 1


Query: 11  RQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKKCS 70
           +QA ++H G     GPVIAVL VI ILG +AG+IGRL SGRRV+G GQYD EGWVE+KCS
Sbjct: 19  QQAYTAHTGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRRVMGHGQYDFEGWVERKCS 78

Query: 71  SCLDGKVDDVPPSRPPRSATVGGDVPVAMPILPEIKEEQG 111
           SCLDG+VD  PP+RP        D+PVA P+     EE+G
Sbjct: 79  SCLDGRVDP-PPTRP-------ADIPVAEPV-----EEEG 104

[Close]

BLAST of Cp4.1LG05g12310.1 vs. NCBI nr
Match: gi|147858321|emb|CAN81423.1| (hypothetical protein VITISV_035943 [Vitis vinifera])

HSP 1 Score: 101.7 bits (252), Expect = 8.6e-19
Identity = 62/109 (56.88%), Postives = 74/109 (67.89%), Query Frame = 1


Query: 9   MPRQAASSHVGADVPFGPVIAVLVVIVILGTVAGIIGRLFSGRRVVGGGQYDVEGWVEKK 68
           + +QA ++H G     GPVIAVL VI ILG +AG+IGRL SGRR++G GQYDVEGWVE+K
Sbjct: 827 LTQQAYTAHSGHG-SVGPVIAVLAVITILGVIAGMIGRLCSGRRIMGHGQYDVEGWVERK 886

Query: 69  CSSCLDGKVDDVPPSRPPRSAT---VGGDVPVA--MPILPEIK-EEQGH 112
           CSSC+DG+VD  PP RPP + T    G   P A       EIK EEQ H
Sbjct: 887 CSSCIDGRVD--PPPRPPPAPTSYSPGESAPPADSSETAQEIKQEEQSH 932

The following BLAST results are available for this feature:

BLAST of Cp4.1LG05g12310.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG05g12310.1 vs. TrEMBL


Match Name	E-value	Identity	Description
U5GFK7_POPTR	2.7e-19	58.25	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s15180g PE=4 SV=1	[more]
B9S776_RICCO	3.5e-19	59.00	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0774210 PE=4 SV=1	[more]
A5BS04_VITVI	6.0e-19	56.88	Peroxidase OS=Vitis vinifera GN=VITISV_035943 PE=3 SV=1	[more]
A0A067KPY1_JATCU	5.1e-18	55.34	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04879 PE=4 SV=1	[more]
B9HRW7_POPTR	1.5e-17	55.34	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s10950g PE=4 SV=1	[more]

BLAST of Cp4.1LG05g12310.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G26520.1	1.4e-11	34.91	unknown protein	[more]
AT3G57500.1	7.0e-11	40.70	unknown protein	[more]

BLAST of Cp4.1LG05g12310.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1009115432\|ref\|XP_015874226.1\|	3.7e-22	60.19	PREDICTED: transcription factor RBF1-like [Ziziphus jujuba]	[more]
gi\|743914551\|ref\|XP_011001206.1\|	1.0e-19	59.22	PREDICTED: uncharacterized protein LOC105108559 [Populus euphratica]	[more]
gi\|566166639\|ref\|XP_006384448.1\|	3.9e-19	58.25	hypothetical protein POPTR_0004s15180g [Populus trichocarpa]	[more]
gi\|255561671\|ref\|XP_002521845.1\|	5.0e-19	59.00	PREDICTED: uncharacterized protein LOC8283273 [Ricinus communis]	[more]
gi\|147858321\|emb\|CAN81423.1\|	8.6e-19	56.88	hypothetical protein VITISV_035943 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cp4.1LG05g12310	Cp4.1LG05g12310	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g12310.1:cds:001	Cp4.1LG05g12310.1:cds:001	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cp4.1LG05g12310.1	Cp4.1LG05g12310.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33429	FAMILY NOT NAMED	coord: 25..109 score: 3.3
None	No IPR available	PANTHER	PTHR33429:SF5	SUBFAMILY NOT NAMED	coord: 25..109 score: 3.3