Cp4.1LG05g05390.1 (mRNA) Cucurbita pepo (Zucchini)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.GCTTTGAAACGGGGATTCCGCTAAAATCCAATTTGAGAGGGATAAGGCTGATTAGCCGCGTAACAATGACAAGATTTTTAGCTAAACATAGTCAATCTTGATCAACAACAATCCGTACGCCGCACCAAATCGATTGCTCGCTCGAACCCCTCCTTTCGGAGTTCAATCAATCTTTCATTTCTGCCTTCTCCAAGAACACAGCCATGGCGCCGACCCCTAAATCTCATCTGGGTGTAGTCTTTTTTACCTTCATCGCCTTCTTGGCTTCGATTCCTGAGCTTGCTGTGGCCGGATCGGATGCTCCCACGGTCTATGATATTCTCCCCCAATATGGGCTTCCGAGTGGCCTCTTACCTGACTCTGTCGTCGATTACTCCCTATCTTCCGATGGTCAATTTGTTGTTCATTTGGCCAAACCCTGTTATATCAACTTCGATTACTTGGTTTATTACGACAAGACCATTACTGGGAAGCTTAAATACGGCTCCATCACTGATCTCGACGGTATCGAGGTTCGGAAATTCTTGATGTGGCTCGATGTGAAGGAAATCAGAGTCGATTTGCCGCCTTCTGATAATATCTACTTCCAAGTTGGATTTATCAATAAGAAGCTCGACATCGATCAGTTTAAGACCGTTCATTCATGCCGGGACGATGGTTTGGGCTATTGTCTTGACTCCTGGAAACGGATTCTTGAGGTATATTCTTAGCCGCCATTCGCTATTGTCAAATCTTTCCTGCTTTGGATTATCTACTTTCGAATCTTGTTTAACTCATGGGTATCTGTTTGTAATCGCTCTGGTTTGTTCGTGATTAGAACTCTTTGATTTTGGTGCTTTTTATTGTTCTTCCATTTGATGCAGTAAAATTTGTTCAAGATGTTTTACAGATTCTTTGGACTTGAGAGAAATCTTGCATTTAAAACACGATGGCGTGTATGAACTCGATTGTTAAATGAAACCAGTTCAAGAGAATTTAGACCTTGTTCTGTCAAAATTTATGTTTAGTACCCCACGTCGAATATTTCTTTTCAAGCGTTGATTTTTGGTGAGCGCATCATTCTGTGTCTTGAAGTTATCATCTTGTTGGGCAGCCTTTGTCATGACGTGATCAGGATTTTTTTGGTAGAAAATTGTTTGCTTATTTTTTTTAAATAGGCAATGAACGAATTTATTGACCAAAACACATAAACAATATACTAAAAGGAGAAGGAATAACTCCAAATGGTCAAGGGAATTACGAAAAGGACTTCCATCCAAGGGCAAATTGTTTGTCATTCAGGATGTTTGATGGCTTTGATCCAATTTTATAGAACCAAACCATTTTGAAGCATTTCAGTGTCTATATCCCTTTTGAATTCCTTTGCTATAAGAAAATTGAACCTCTGAACAATAATCTGGACCTTGAGGAGCCTCGTCTTTCGCTCTTCTCAGTTCTCTGAAATGTTCTGAGATAACAGTCAGTGTTTAATTAGTTTTTGACCTTCATATGAAGAAAATGAGGAATATGAACTCAAATTGGCTGATCTTGGCTCTGTCCAGGTTGATTCAATTAAGTTTCGGCGAGTTGCATTTGTTTGTGGTATTAGAACTTGTAATTCCACACCTTTATCGAGTTTAAATTATATTTCATAGTCATTAGGCTGCAACTGTCATATATTGTTATTCAGGACTTGTCACAACTTCAGTGAACAGGTGATCAGATTAAGCTAGACTGCCTTCATTTTGCCTCCTCTATTCTGTTAATGTTATTGTTTCAAATTCTGCTGATGTGATCTTCCAATGAAATGGCCATTTTGGTCGATCGATAATCTAATATGCTAGTTTCAATGAATCTCGTTATTTAAATTTCATAGCTGCTTGGATTTGGATCAACTCATTGCACATGGCCACTCTGTTTCTCTCACTTATTGCTTGATCACATCGAAACTTCTCGAACATGTTGCTGTTAATTTATATTGGTCTTTGGCATTAGCTAGCTTATCCAGGGGGAATTGTGTAAGATATGCTCAGTTACAGGGTTGCTTTGTCTTTTAAGCACCAATATGCTTCACTAGGTTCAAAAAGCTTACTCACTTGTTGCAAATAAGTTCAAAGAATGTTACAAAGTGAGTATGGTTGGTGAGTGATTCTATCATGCTAATACTTTTTCATTGGTGATCACAGCTCCCAACTCCAGTTGACGACGTCCCGATGCTAGTCACCGAGTAGCCTCTTTGTCCCTTGTCCGAGTTTTTGGCCTTCTTGCTGCATTATCTAAATGACCAGAAGAAGAGGTTTAGTAGTTTTCGGTATGTGGTCTCAGTTTAGACGGCAAAATATGAATGTCTATCTTGGTAGACCTATGATGTAAAGCCACTATGATGGTATGTTAAATATTAGGTGAGTCTTGTGTTTGATCCTCAGAAAAAGTGCCTAAAACATTGGCATTTGAGGAACTATAAACTGAATGGATTTGAATGAGATGTGATATTAAATAGTATGAATTTGCTCACGTTTTATACTATGTTGCTGCTTACTCGTTGAATATGATTAAAGATCACCAAAGAATCTCTTCTCTTTTTCAATTGTCTAATGTTTCTTAGATTCTCTGAATTGTAGTCT GCTTTGAAACGGGGATTCCGCTAAAATCCAATTTGAGAGGGATAAGGCTGATTAGCCGCAACACAGCCATGGCGCCGACCCCTAAATCTCATCTGGGTGTAGTCTTTTTTACCTTCATCGCCTTCTTGGCTTCGATTCCTGAGCTTGCTGTGGCCGGATCGGATGCTCCCACGGTCTATGATATTCTCCCCCAATATGGGCTTCCGAGTGGCCTCTTACCTGACTCTGTCGTCGATTACTCCCTATCTTCCGATGGTCAATTTGTTGTTCATTTGGCCAAACCCTGTTATATCAACTTCGATTACTTGGTTTATTACGACAAGACCATTACTGGGAAGCTTAAATACGGCTCCATCACTGATCTCGACGGTATCGAGGTTCGGAAATTCTTGATGTGGCTCGATGTGAAGGAAATCAGAGTCGATTTGCCGCCTTCTGATAATATCTACTTCCAAGTTGGATTTATCAATAAGAAGCTCGACATCGATCAGTTTAAGACCGTTCATTCATGCCGGGACGATGGTTTGGGCTATTGTCTTGACTCCTGGAAACGGATTCTTGAGTCT ATGGCGCCGACCCCTAAATCTCATCTGGGTGTAGTCTTTTTTACCTTCATCGCCTTCTTGGCTTCGATTCCTGAGCTTGCTGTGGCCGGATCGGATGCTCCCACGGTCTATGATATTCTCCCCCAATATGGGCTTCCGAGTGGCCTCTTACCTGACTCTGTCGTCGATTACTCCCTATCTTCCGATGGTCAATTTGTTGTTCATTTGGCCAAACCCTGTTATATCAACTTCGATTACTTGGTTTATTACGACAAGACCATTACTGGGAAGCTTAAATACGGCTCCATCACTGATCTCGACGGTATCGAGGTTCGGAAATTCTTGATGTGGCTCGATGTGAAGGAAATCAGAGTCGATTTGCCGCCTTCTGATAATATCTACTTCCAAGTTGGATTTATCAATAAGAAGCTCGACATCGATCAGTTTAAGACCGTTCATTCATGCCGGGACGATGGTTTGGGCTATTGTCTTGACTCCTGGAAACGGATTCTTGAGTCT MAPTPKSHLGVVFFTFIAFLASIPELAVAGSDAPTVYDILPQYGLPSGLLPDSVVDYSLSSDGQFVVHLAKPCYINFDYLVYYDKTITGKLKYGSITDLDGIEVRKFLMWLDVKEIRVDLPPSDNIYFQVGFINKKLDIDQFKTVHSCRDDGLGYCLDSWKRILES
BLAST of Cp4.1LG05g05390.1 vs. TrEMBL
Match: A0A0A0KX35_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G280550 PE=4 SV=1) HSP 1 Score: 284.6 bits (727), Expect = 7.5e-74 Identity = 131/159 (82.39%), Postives = 145/159 (91.19%), Query Frame = 1
BLAST of Cp4.1LG05g05390.1 vs. TrEMBL
Match: A0A0B0MN99_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_24195 PE=4 SV=1) HSP 1 Score: 221.5 bits (563), Expect = 7.8e-55 Identity = 106/165 (64.24%), Postives = 124/165 (75.15%), Query Frame = 1
BLAST of Cp4.1LG05g05390.1 vs. TrEMBL
Match: A0A0D2TSS2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G005200 PE=4 SV=1) HSP 1 Score: 219.9 bits (559), Expect = 2.3e-54 Identity = 104/165 (63.03%), Postives = 123/165 (74.55%), Query Frame = 1
BLAST of Cp4.1LG05g05390.1 vs. TrEMBL
Match: A0A067JTM4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22853 PE=4 SV=1) HSP 1 Score: 218.0 bits (554), Expect = 8.6e-54 Identity = 106/169 (62.72%), Postives = 129/169 (76.33%), Query Frame = 1
BLAST of Cp4.1LG05g05390.1 vs. TrEMBL
Match: D7LZC5_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_326382 PE=4 SV=1) HSP 1 Score: 215.7 bits (548), Expect = 4.3e-53 Identity = 102/159 (64.15%), Postives = 126/159 (79.25%), Query Frame = 1
BLAST of Cp4.1LG05g05390.1 vs. TAIR10
Match: AT5G19860.1 (AT5G19860.1 Protein of unknown function, DUF538) HSP 1 Score: 209.9 bits (533), Expect = 1.2e-54 Identity = 98/159 (61.64%), Postives = 124/159 (77.99%), Query Frame = 1
BLAST of Cp4.1LG05g05390.1 vs. TAIR10
Match: AT1G55265.1 (AT1G55265.1 Protein of unknown function, DUF538) HSP 1 Score: 115.2 bits (287), Expect = 4.0e-26 Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 1
BLAST of Cp4.1LG05g05390.1 vs. TAIR10
Match: AT5G54530.1 (AT5G54530.1 Protein of unknown function, DUF538) HSP 1 Score: 109.4 bits (272), Expect = 2.2e-24 Identity = 49/128 (38.28%), Postives = 77/128 (60.16%), Query Frame = 1
BLAST of Cp4.1LG05g05390.1 vs. TAIR10
Match: AT3G07470.1 (AT3G07470.1 Protein of unknown function, DUF538) HSP 1 Score: 98.6 bits (244), Expect = 3.8e-21 Identity = 49/138 (35.51%), Postives = 79/138 (57.25%), Query Frame = 1
BLAST of Cp4.1LG05g05390.1 vs. TAIR10
Match: AT3G07460.2 (AT3G07460.2 Protein of unknown function, DUF538) HSP 1 Score: 91.7 bits (226), Expect = 4.7e-19 Identity = 47/142 (33.10%), Postives = 82/142 (57.75%), Query Frame = 1
BLAST of Cp4.1LG05g05390.1 vs. NCBI nr
Match: gi|449448818|ref|XP_004142162.1| (PREDICTED: uncharacterized protein LOC101215998 [Cucumis sativus]) HSP 1 Score: 284.6 bits (727), Expect = 1.1e-73 Identity = 131/159 (82.39%), Postives = 145/159 (91.19%), Query Frame = 1
BLAST of Cp4.1LG05g05390.1 vs. NCBI nr
Match: gi|659097761|ref|XP_008449800.1| (PREDICTED: uncharacterized protein LOC103491580 [Cucumis melo]) HSP 1 Score: 284.3 bits (726), Expect = 1.4e-73 Identity = 131/159 (82.39%), Postives = 145/159 (91.19%), Query Frame = 1
BLAST of Cp4.1LG05g05390.1 vs. NCBI nr
Match: gi|1009123859|ref|XP_015878764.1| (PREDICTED: uncharacterized protein LOC107415023 [Ziziphus jujuba]) HSP 1 Score: 227.6 bits (579), Expect = 1.6e-56 Identity = 107/166 (64.46%), Postives = 130/166 (78.31%), Query Frame = 1
BLAST of Cp4.1LG05g05390.1 vs. NCBI nr
Match: gi|728816784|gb|KHG02240.1| (hypothetical protein F383_24195 [Gossypium arboreum]) HSP 1 Score: 221.5 bits (563), Expect = 1.1e-54 Identity = 106/165 (64.24%), Postives = 124/165 (75.15%), Query Frame = 1
BLAST of Cp4.1LG05g05390.1 vs. NCBI nr
Match: gi|823263323|ref|XP_012464425.1| (PREDICTED: uncharacterized protein LOC105783482 isoform X1 [Gossypium raimondii]) HSP 1 Score: 219.9 bits (559), Expect = 3.2e-54 Identity = 104/165 (63.03%), Postives = 123/165 (74.55%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02
|