Cp4.1LG07g08510 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG07g08510
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	RNA polymerase II-associated 3
Location	Cp4.1LG07 : 7747225 .. 7752969 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGGTTTTACGCATTATGAATCCACGGCGAAGTGCTGACCGGAGCGAGGGGGACTGCTTTCAGCGGACGGCTCTGAGTGGACGCTTCGAGAACCACTTTGTGCTACAATCTCCGTTTATCCTATTGTGGGTTTCCTCTGGTCTCCCATGGCGGATTCATCCGGCAAGCACGGGCGTGATCAGCCTCTGGTATTTCCATTTATCCTAAGCTGCTGTAGTTCAGAGATTAACCGCCTTTTTGTTTCTTTCTTGCTTGAAGAACGAGCTTTTAATTTTGGGTTGAGTTCTAATTTCTGTTTAACTCGTTGTTTGTGGAAGCTAAGCGGAATGATTTCGTCTGCAATTTCTAGGTGAATGGAATTGATTAATTGGGATTCAGTGGGGTATGATAATGTGTAGTTTTGTTCACTTGCATTGCGGTGATTAGTAAGCTGAATGTGTTGAAATATGGGTTAGAAATTGTAATCTGACTTACTAATAGGTTTGTTTTTGCCACGAAATCGTTAGTTTTGGTATGTTGAGTTAAGTGCATGGGTGTGTTTACTGGCTTTTCTTATTGAATTGTGTGTGTTTCGGGTGCTTTCTGTTTCTTCAGGATTTCCAGGGGTTTTTGAATGACTTGCAGGATTGGGAACTCTCCCTTAATGGAAGAGACAAGAAATTGAAGCCACATGCCATTAGTAAAGAAAAGGAGGTATTACTCTATCAAGCTTTCTGTTGGGTAGCGAAATGCACATTTTCGAACAATAAACTGCTATCTCGGACGTTAATATTTATATTGGTTTATGTTTTATAAGGTCGATAGATTTAACTGCTTGTTCATTAGGTGTTTAAATTTCGTCGCAAGTGTGGATACGTTAATAGTAAATGTATGATGCTATTATGGACTATCTGAGGGGCACTTTAAGTGATGTCATGGCTAAGCAGGGTGGAAGGCAGCCAGTTAAAGCTACAGCAGCTGATTACTTGAAGCACTATGATGCAGTTAAGAGTCTATCAACAAAATCTCATACCGAGCAGAGTTTTGTTGATGCTGCTTCAGAGAAAGAACAGGTAGGTTACATTATTTTGTCCATGTTTTTATGATAAAGACATAATTGGTGCAAAGCTGGCATGAAACGACTTTACTCTTGACTACATGGTGTGTGTAATTTATCGTTATATTTCAGGGTAACGAGTATTTTAAGCAAAAGAAGTTTAAGGAAGCTATTGGCTGCTATTCAAGAAGCATTGCTTTGTCTCCAACAGCTGTAGCCTTTGCAAATAGGGCCATGGCCTACCTAAAAATCAGAAGGCAAGTTATAGATTCAAATTTTTCTTAGTAATTTTCTGCTATAAGTTGTTTTATCTGTTAAATAGTGCTCTTGATGTGGAAAGCTACAACTGTTAAATATGCTAAAATAGCTGTGTTCTCTGCGTTCTATTTCCACCTCGCTGGAGTCAGATTTCAGGAAGCTGAGGATGACTGTACAGAGGCCTTAAATTTAGATGATCGATATATTAAAGCATATTCACGCAGAGCAACAGCTAGAAAGGAACTTGGGAAGGCTAAAGAAGCCTTGGAAGGTATTAAAATAAGCAGCCAGCTTAATTGCACATTGATCTTTTATGCTTTTTATCCATCTGATATATTTGACTTTGCTGATTGTAGATGCTGAATTTGCTCAGAGGTTGGAGCCTAACAACCAAGAGATCAAGAAGCAACATGCTGAGCTCAGAGCTTTTGTTGGAAAAGTAAGTTTAGTAGAATTATCATTTCAGATAACTTTTGTTAAATATCTGGGTCTCTCTAAAACTTATATCCTGGTGAATGTGGAAGAGGGAGTTGTGATATTACAGATGAGTTATGCTGACAAGATATTTTCATTTAATTTTTATTGTACATGAATCCATCTTGCAGGCAATTCTTGAGAAGGCATCTGGTGCTTCGAGAAGCTCCACGAAAGAGAAGAAGATGGTTGGAAAATCTGACTCTGAAGCAAAAATTCAGGACATCCCTCCAGTCTCAAGCAGCACACTAAGGTCGGGGTTATCGGCAGCTCAAGACCACATTGAAGTAAGGATTACTAATTTGTTGTTGTCCATGGCATCGAGTATTTTCTCTTGAAACAAATATAGTAGGGTCCGACAGTTGTCATGTGAGAGCAATTGAGGTGCATGCAGTATAAGAAAATCAATAAATAAGCAAACAAATGCTTATCCATATCCTGTAATTTTTCAATGACGATTCAACCTACCTGCATCTTTTACAATTGACATTCAACAGATCTCTCTCTAGGTTTCTCTCTTTTTTCTCTAGTTTTCTGGAAACTATATTTTGCTATAATGTAAAACAATACTAATGTATGGTAACTTCCTTGTCCTGCTCTCTTTTGTAGAGCTCTGGTTTAATCTATTCCTTTGTTCAAATGCGAAATGGAGAGAAAATTTTCTGATAATTAATCACTTAAACTGCTCATATCTTGGCTGTAGCGTCTTTTTTTATTTTTTTATATTTGTATTTCTTTCCTCCAATTGACCAAATATGTTTGGCTTCTTTTGCATGTTTTTAGAGTACTAAATTAACTGATTGAAGAAAACTGGTTTAGTGCACCCCCCCTTCCCCCCAATAATTTTAAGATAATAATGCTTATTCTGAAGCTGGATGCTTGCAATATGATGTTTGAGCTTTTGGACTCTATTCTTAGGAAAATGGTGGAGAAAAAGCTGTCAAGGAATCTGCACGTTTAGAGGGAACCGAGGGCAGAAGTACAGGAGCTGAAATCAGATACAAAAGAGAAGCAACAAATGGTGTTCACAAAGACCCAAATTCGAATTTGGGGGCACTGGAGGTCTCTTAAGATCCTATAAACTCTTCTTTCTGCCTTGTACTCTTTCTTTCGATTGTTGGTTCTCAACTTTATGCTAACATATACCTTTTTTGTTTAAAGAAACACAAATAAGATATCTGCAATAGTTTCTTGTCTGCAAACTATTGTGGGGTTCATCTAAAAAATATTTCTGAAATCAAATAGAAGTGTGCCAATTTTCCTATTTCGGTTGTGGGGTTCAGCTTAAAATGTTCGTTACTAAAAAAAAAAAAAAAAAAAAGGGTAAAAGAAGAAATGAAGTTCTCATGAGGTAGGCCAAATGTAGCCAAGTCTCCCATCATTTGTGCCTAAGATGAGAGTCAATGTCAATCATACATTTATTCAGGAATTGGGACTAGGAATAAGAGTGCTCTCTTTCAGCTTTCTTTGAGGCATTACTTTAAAGACAATCTCGTACTGACTTGCTCACGCCTTATTCATGACTCAAAAGCCAATAGATTACTTTCATGATTAGTCGAATTAAAGCTCATCCATTTAAAGTCTAAAATTCTATGAGAACTTTATATCATATCATAGATTGAGCAGATGGGAAGATAGAAGGCTTCTACTTAACCTTTTTCTCTCACCTTTTATCAATTTGTGAACCATGTAATCATATCATGCTCATTTGGATGCCATAGCCTATTCCCTATGTATTTTTGCCACTAAACCTTTCTGACACAATGATATCTAAATTTTTTTGTTTTCACACCTATTCTGCTCCTGCCAAAACTTTCACAGAGAAATCATGTTTCAAGAAAGCAGGAACTGAAGCCTTCAGTTCAGGAACTTGCTTCTCGAGCAGCTTCTAGAAGTATGGTTGAAGCTGCAAAAAACATTGTAGCCCCAACCACTGCCTATCAATTTGAAGTTTCTTGGCGAGGATTCTCTGGTGATCGTGCACTGCAGGCTCAACTTCTAAAGGTATGTGATATAGACCAACTATGTTGTCAATGACACTGTGTTCATTTGCCTATCCAAGAGAATATGAATATCTGGGTATTTTCCTATGTATAAAAGTTGTTGTCTGATAAATATTAGAAGTGTGCTGCCATATTAAAGACGGCAACGCTAGTTTCGACTACCTGATATTGTAGGTCATATAGTTGTCTCCTCGTTTTCTATCCATGGGATCATCAATTGGCTGATATTTTAGGGTAGGAAAAAAAAAACACTCCTTTTCATTTTTGTGGTAGCGAGCACTCTGCATATTGGCATGTCCTTGGCAGCAAAGAATTCTGTTTGATATAGCGAGCACCCAATGTTTGTCACTTTATTCGGCTCCTCTCCACCGTTTTTTTTCCTTCTCTCTTTTTCACGCAATTGTTTCTCTTACTTGCTAGGCCATCTCTCCAGCCAAGTTGCCTCCGATATTCAAGAATGCACTATCAGCTCCAATTTTAATAGACATTGTCAAGTGCGTGGCTACCTTTTTCACGTAAGTTAAAAATTTCTAACTTGTCCTGGGGGAACATTTAGAAAATGATTTCAAACATCAATGGTTAACAGACCATTCTGGCCATTCAATTTGCAGCGAAGAGATGGCTTTGGCTATCAGTTTCTTAGAAAATTTAGCCAAGGTCCCAAGATTCAGCATACTCATGATGTGTCTTCCATCCAATGAAAAGTCTGGTAAGTTGTAGAAACCCTTCCCTCTTCTCGCCTTCTTGCATGGTAACCTTCATTTCATATAACATTTTCCCCATATCTCTAACCTTAGTGATTAATAGTTTAGCATCTACATTTGCAACCAAATTTATTAGGATAGAAAATGTTGGTTATGATTGATTTGGTGTATTGCACTTGCACATGTCTCTAAACATCATAGACGTTCACTCTGAAGCAGCCTGCCTTCTGGTTATTGTTACTCGCTCGATGATATATGTCAATTTGATAGGCTTTTCATATTCTTTTGTCTCTCTTGGTGGATTCGTTTCTTTTGCGTTTGCTCTTCTTTATTTTATTTTGGATAATCGTTTTTCTCAAAAAAGATAAAAGAAAAAAGAAAAGAAAAGAAAAGATAATGAAATTCCCATGTGGGACAAGAATGCTTCATACTGAGTATGGGCAGTGAACTTCTTGGCCCATGTTTGAGCTGTGAATTATGATCACCGCCTTGTTTTGTTATCGTCTGGTATCCTGTCTTTAAGAAATCATTTCATTAATGCCTTGAATTTTTTTTTTAATATGAAACAATCTCATTGTTATCTTGAAGAAGTAATCTAGTGACTGGATTTACATGTCTTGAGTTATAGCCTGTACCTCTATTGTTAAAACCAATCTTAAAAGGTGAGGAGTTGAATGCAAAAGGCTTTAATTCATATTTTATTGGATACATTTGTTTAGAAACTTGAATGTTACAAAGCCTTCTAATACTCGGCCTATCGACGGTGAGGTCCGAGACATTAATTTTGATAGGAACTGAAGTATATATCGACACAGCCCACAAAATAATCGGAAATTTGTGAGCTTATCATGGTGAGTGTTTTATATATTTGTATTCTAACTTCAAAGCCATGTGAAACAGATCTCCTCAAGATTTGGGATGGAGTATTTTGTGATGAGGCTGTTCCAATTGAGTACGCAGAAATGCTCGACAGCTTGCGTTCAAAGTATTTCCTTAAATTATGACAAACGTTGCTTGAATGAGAAGAAGCACTTGCCTCTCTTAAAGTCAACCCTGCTGCTTTTCTTCAGTGTAAAGTATCCACTTACTTGCTCCTCTGTTTTTGGGGTCACAGTTTGACAATTGGCATGTTAACATATGTGACTAAAAAAATGTCCCATTTCTAGAGCAATCTACCTGTCAATTCTCTTCTATAACCTTTTGAATTTACTCGAAAATTATCAGAATTGACTCGGACTTAGAATTCTCGACAACATTTCTGAACCTCGAC

mRNA sequence

GGGGTTTTACGCATTATGAATCCACGGCGAAGTGCTGACCGGAGCGAGGGGGACTGCTTTCAGCGGACGGCTCTGAGTGGACGCTTCGAGAACCACTTTGTGCTACAATCTCCGTTTATCCTATTGTGGGTTTCCTCTGGTCTCCCATGGCGGATTCATCCGGCAAGCACGGGCGTGATCAGCCTCTGGATTTCCAGGGGTTTTTGAATGACTTGCAGGATTGGGAACTCTCCCTTAATGGAAGAGACAAGAAATTGAAGCCACATGCCATTAGTAAAGAAAAGGAGGGTGGAAGGCAGCCAGTTAAAGCTACAGCAGCTGATTACTTGAAGCACTATGATGCAGTTAAGAGTCTATCAACAAAATCTCATACCGAGCAGAGTTTTGTTGATGCTGCTTCAGAGAAAGAACAGGGTAACGAGTATTTTAAGCAAAAGAAGTTTAAGGAAGCTATTGGCTGCTATTCAAGAAGCATTGCTTTGTCTCCAACAGCTGAAGCTGAGGATGACTGTACAGAGGCCTTAAATTTAGATGATCGATATATTAAAGCATATTCACGCAGAGCAACAGCTAGAAAGGAACTTGGGAAGGCTAAAGAAGCCTTGGAAGATGCTGAATTTGCTCAGAGGTTGGAGCCTAACAACCAAGAGATCAAGAAGCAACATGCTGAGCTCAGAGCTTTTGTTGGAAAAGCAATTCTTGAGAAGGCATCTGGTGCTTCGAGAAGCTCCACGAAAGAGAAGAAGATGGTTGGAAAATCTGACTCTGAAGCAAAAATTCAGGACATCCCTCCAGAAAATGGTGGAGAAAAAGCTGTCAAGGAATCTGCACGTTTAGAGGGAACCGAGGGCAGAAGTACAGGAGCTGAAATCAGATACAAAAGAGAAGCAACAAATGGTGTTCACAAAGACCCAAATTCGAATTTGGGGGCACTGGAGAGAAATCATGTTTCAAGAAAGCAGGAACTGAAGCCTTCAGTTCAGGAACTTGCTTCTCGAGCAGCTTCTAGAAGTATGGTTGAAGCTGCAAAAAACATTGTAGCCCCAACCACTGCCTATCAATTTGAAGTTTCTTGGCGAGGATTCTCTGGTGATCGTGCACTGCAGGCTCAACTTCTAAAGGCCATCTCTCCAGCCAAGTTGCCTCCGATATTCAAGAATGCACTATCAGCTCCAATTTTAATAGACATTGTCAAGTGCGTGGCTACCTTTTTCACCGAAGAGATGGCTTTGGCTATCAGTTTCTTAGAAAATTTAGCCAAGGTCCCAAGATTCAGCATACTCATGATGTGTCTTCCATCCAATGAAAAGTCTGATCTCCTCAAGATTTGGGATGGAGTATTTTGTGATGAGGCTGTTCCAATTGAGTACGCAGAAATGCTCGACAGCTTGCGTTCAAAAATTGACTCGGACTTAGAATTCTCGACAACATTTCTGAACCTCGAC

Coding sequence (CDS)

ATGGCGGATTCATCCGGCAAGCACGGGCGTGATCAGCCTCTGGATTTCCAGGGGTTTTTGAATGACTTGCAGGATTGGGAACTCTCCCTTAATGGAAGAGACAAGAAATTGAAGCCACATGCCATTAGTAAAGAAAAGGAGGGTGGAAGGCAGCCAGTTAAAGCTACAGCAGCTGATTACTTGAAGCACTATGATGCAGTTAAGAGTCTATCAACAAAATCTCATACCGAGCAGAGTTTTGTTGATGCTGCTTCAGAGAAAGAACAGGGTAACGAGTATTTTAAGCAAAAGAAGTTTAAGGAAGCTATTGGCTGCTATTCAAGAAGCATTGCTTTGTCTCCAACAGCTGAAGCTGAGGATGACTGTACAGAGGCCTTAAATTTAGATGATCGATATATTAAAGCATATTCACGCAGAGCAACAGCTAGAAAGGAACTTGGGAAGGCTAAAGAAGCCTTGGAAGATGCTGAATTTGCTCAGAGGTTGGAGCCTAACAACCAAGAGATCAAGAAGCAACATGCTGAGCTCAGAGCTTTTGTTGGAAAAGCAATTCTTGAGAAGGCATCTGGTGCTTCGAGAAGCTCCACGAAAGAGAAGAAGATGGTTGGAAAATCTGACTCTGAAGCAAAAATTCAGGACATCCCTCCAGAAAATGGTGGAGAAAAAGCTGTCAAGGAATCTGCACGTTTAGAGGGAACCGAGGGCAGAAGTACAGGAGCTGAAATCAGATACAAAAGAGAAGCAACAAATGGTGTTCACAAAGACCCAAATTCGAATTTGGGGGCACTGGAGAGAAATCATGTTTCAAGAAAGCAGGAACTGAAGCCTTCAGTTCAGGAACTTGCTTCTCGAGCAGCTTCTAGAAGTATGGTTGAAGCTGCAAAAAACATTGTAGCCCCAACCACTGCCTATCAATTTGAAGTTTCTTGGCGAGGATTCTCTGGTGATCGTGCACTGCAGGCTCAACTTCTAAAGGCCATCTCTCCAGCCAAGTTGCCTCCGATATTCAAGAATGCACTATCAGCTCCAATTTTAATAGACATTGTCAAGTGCGTGGCTACCTTTTTCACCGAAGAGATGGCTTTGGCTATCAGTTTCTTAGAAAATTTAGCCAAGGTCCCAAGATTCAGCATACTCATGATGTGTCTTCCATCCAATGAAAAGTCTGATCTCCTCAAGATTTGGGATGGAGTATTTTGTGATGAGGCTGTTCCAATTGAGTACGCAGAAATGCTCGACAGCTTGCGTTCAAAAATTGACTCGGACTTAGAATTCTCGACAACATTTCTGAACCTCGAC

Protein sequence

MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGRQPVKATAADYLKHYDAVKSLSTKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPTAEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHAELRAFVGKAILEKASGASRSSTKEKKMVGKSDSEAKIQDIPPENGGEKAVKESARLEGTEGRSTGAEIRYKREATNGVHKDPNSNLGALERNHVSRKQELKPSVQELASRAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQAQLLKAISPAKLPPIFKNALSAPILIDIVKCVATFFTEEMALAISFLENLAKVPRFSILMMCLPSNEKSDLLKIWDGVFCDEAVPIEYAEMLDSLRSKIDSDLEFSTTFLNLD

Homology

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BLAST of Cp4.1LG07g08510 vs. Swiss-Prot
Match: OE64C_ARATH (Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.5e-13
Identity = 50/127 (39.37%), Postives = 71/127 (55.91%), Query Frame = 1


Query: 71  STKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPT--------------- 130
           S K+ T++   + A  KE+GN+ FK+K +++AIG YS +I LS                 
Sbjct: 464 SKKAITKEESAEIA--KEKGNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLEL 523

Query: 131 ---AEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQ 180
               +AE+DCT+A+ LD + +KAY RR TAR+ LG  K A+ED  +A  LEPNN+     
Sbjct: 524 GGFLQAEEDCTKAITLDKKNVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNNKRASLS 583

[Close]

BLAST of Cp4.1LG07g08510 vs. Swiss-Prot
Match: RPAP3_MOUSE (RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 1.6e-12
Identity = 109/409 (26.65%), Postives = 175/409 (42.79%), Query Frame = 1


Query: 35  KKLKPHAISKEKEGGRQPVKATAADYLKHYDAVKSLSTKSHTEQSFVDAASEKEQGNEYF 94
           +K+     SKE  G   P  A AA+           S  +  +Q    A +EK+ GN +F
Sbjct: 243 RKINQALTSKENSG---PGAAAAAES----KPAAGESKPTGGQQGRQKAIAEKDLGNGFF 302

Query: 95  KQKKFKEAIGCYSRSIALSPT------------------AEAEDDCTEALNLDDRYIKAY 154
           K+ K+++AI CY+R IA   T                   EAE DCT+A+ LD  Y KA+
Sbjct: 303 KEGKYEQAIECYTRGIAADRTNALLPANRAMAYLKIQRYEEAERDCTQAIVLDGSYSKAF 362

Query: 155 SRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHAELRAFVGKAILEKA--SGASRS 214
           +RR TAR  LGK  EA +D E    LEP N    KQ A   + + K ++EK         
Sbjct: 363 ARRGTARTFLGKINEAKQDFETVLLLEPGN----KQAATELSRIKKELIEKGHWDDVFLD 422

Query: 215 STKEKKMVGKSDSEAKIQDIPPENGGEKAVKE------SARLEGTEGRSTGAEIRYKREA 274
           ST+   +V   D+        P  G  KA+K+         +E  +   + A +     A
Sbjct: 423 STQRHHVVKAVDN--------PPRGSPKALKKVFIEETGNLIETVDAPDSSATVPESDRA 482

Query: 275 T----NGVHKDPNSNLGALERNHVSRKQELK-PSVQELASRAASRSMVEAAKNIVAPTTA 334
           T     G  K+P+  + +L      R + LK  +V + ++  A   + + A+   +   +
Sbjct: 483 TAAVGTGTKKNPSEGV-SLPAGDRPRAKVLKIEAVSDTSAPQAQVGVKQDARQPGSEKAS 542

Query: 335 YQFEV----------------SWRGFSGDRALQA------QLLKAISPAKLPPIFKNALS 389
            + E                 S++  S  R L++      Q +K I P+  P +F+  L 
Sbjct: 543 VRAEQMPGQLAAAGLPPVPANSFQLESDFRQLRSSPEMLYQYVKNIEPSLYPKLFQKNLD 602

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BLAST of Cp4.1LG07g08510 vs. Swiss-Prot
Match: RPAP3_HUMAN (RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2)

HSP 1 Score: 73.9 bits (180), Expect = 4.7e-12
Identity = 58/170 (34.12%), Postives = 87/170 (51.18%), Query Frame = 1


Query: 77  EQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIA------------------LSPTAEA 136
           +Q+   A SEK++GN +FK+ K++ AI CY+R IA                  +    EA
Sbjct: 276 QQNKQQAISEKDRGNGFFKEGKYERAIECYTRGIAADGANALLPANRAMAYLKIQKYEEA 335

Query: 137 EDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHAELRA 196
           E DCT+A+ LD  Y KA++RR TAR  LGK  EA +D E    LEP N++   + ++++ 
Sbjct: 336 EKDCTQAILLDGSYSKAFARRGTARTFLGKLNEAKQDFETVLLLEPGNKQAVTELSKIK- 395

Query: 197 FVGKAILEKA--SGASRSSTKEKKMVGKSDSEAKIQDIPPENGGEKAVKE 227
              K ++EK         ST+ + +V       K  D PP  G  K +K+
Sbjct: 396 ---KELIEKGHWDDVFLDSTQRQNVV-------KPIDNPPHPGSTKPLKK 434

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BLAST of Cp4.1LG07g08510 vs. Swiss-Prot
Match: RPAP3_RAT (RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=1 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.3e-11
Identity = 83/302 (27.48%), Postives = 134/302 (44.37%), Query Frame = 1


Query: 117 EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQE-------I 176
           EAE DCT+A+ LD  Y KA++RR TAR  LGK  EA +D E    LEP N++       I
Sbjct: 334 EAERDCTQAILLDGSYSKAFARRGTARTFLGKINEAKQDFETVLLLEPGNKQAVTELSRI 393

Query: 177 KKQHAE--------LRAFVGKAILEKASGASRSSTKEKKMVGKSDSEAKIQDI-PPENGG 236
           KK+  E        L +     +++      R S K  K V   ++   I+ +  PE+  
Sbjct: 394 KKELIEKGRWDDVFLDSTQRHNVVKPVDSPHRGSPKALKKVFIEETGNLIESVDAPESSA 453

Query: 237 EKAVKESARLEGTEGR----STGAEIRYKREATNGVHKDPNSNLGALERNHVSRKQELKP 296
                + A +    GR    S G  +         V K       +  +  V  KQ ++ 
Sbjct: 454 TVPESDRAAVAVDTGRKKDFSQGDSVSSGETPRAKVLKIEAVGDSSAPQAQVDVKQGVRQ 513

Query: 297 SVQELASRAASRSMVEAAKNIVAPTTA--YQFEVSWRGFSGDRALQAQLLKAISPAKLPP 356
           SV E  S   +++  + A  ++ P  A  +Q E  +R       +  Q +K I P+  P 
Sbjct: 514 SVSEKTSVRVAQTPGQLAAVVLPPVPANSFQLESDFRQLRSSPEMLYQYVKKIEPSLYPK 573

Query: 357 IFKNALSAPILIDIVKCVATFFT--EEMALAISFLENLAKVPRFSILMMCLPSNEKSDLL 395
           +F+  L   +   I+K +  F+   E+ AL    LE L+++ RF + +M +   E+ +L 
Sbjct: 574 LFQKNLDPDVFNQIIKILHDFYVEREKPALIFEVLERLSQLRRFDMAVMFMSGTER-ELT 633

[Close]

BLAST of Cp4.1LG07g08510 vs. Swiss-Prot
Match: RPAP3_CHICK (RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 2.0e-10
Identity = 82/306 (26.80%), Postives = 131/306 (42.81%), Query Frame = 1


Query: 117 EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQHAEL 176
           EAE+DCT+AL LD  Y KA++RR  AR  LGK KEA++D E   +LEP N++   +  ++
Sbjct: 335 EAENDCTQALLLDASYSKAFARRGAARVALGKLKEAMQDFEAVLKLEPGNKQAINELTKI 394

Query: 177 RAFVGK----------AILEKASGASR-----------SSTKEKKMVG--KSDSEAKIQD 236
           R  + +          A+L K S                STK  + +   + D +    D
Sbjct: 395 RNELAEKEQSCHEEYPAVLIKESEIKNIVKLTHNPLNLKSTKPLRRIAVEEVDDDVLNSD 454

Query: 237 IPPENGGEKAVKESARLEGTEG-----RSTGAEI----RYKREATNGVHKDPNSNLGALE 296
                      K S  +E TE      + T  +I    + K E    V   P    GA  
Sbjct: 455 FSSSTSLVNNWKNSVNIETTENLDQDDQLTSMDIPKAKQLKIEEITDV-SSPQLPAGAKG 514

Query: 297 RNHVSRKQELKPSVQELASRAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQAQLL 356
            + V     L PS+ +   R    S   A+     P  ++Q E  +R            L
Sbjct: 515 VSSV-----LHPSMNKQIERENKASFRSASPVPAIPANSFQLESDFRKLKDCPEKMYLYL 574

Query: 357 KAISPAKLPPIFKNALSAPILIDIVKCVATFF--TEEMALAISFLENLAKVPRFSILMMC 389
           K I P+  P +F+ +L   +   I++ +  F+   EE +L +  L+ L+++ RF + +M 
Sbjct: 575 KQIEPSIYPKLFQKSLDPDLFNQILRILHDFYIEKEEPSLILEILQRLSELKRFDMAVMF 634

[Close]

BLAST of Cp4.1LG07g08510 vs. TrEMBL
Match: A0A0A0LGI8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034580 PE=4 SV=1)

HSP 1 Score: 630.9 bits (1626), Expect = 1.1e-177
Identity = 351/453 (77.48%), Postives = 371/453 (81.90%), Query Frame = 1


Query: 1   MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGRQPVKATAADY 60
           MADSS KHGRDQ LDFQGFLNDLQDWE+S  G+DKKLKP AI KEKE  RQ  KA+AADY
Sbjct: 1   MADSSAKHGRDQLLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADY 60

Query: 61  LKHYDAVKSLSTKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPTA---- 120
           +K YDAV  LS    TE SFVDAASEKEQGNEYFKQKKFKEAI CYSRSIALSPTA    
Sbjct: 61  MKQYDAVNRLSRNFQTEGSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 120

Query: 121 -------------EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
                        EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180

Query: 181 PNNQEIKKQHAELRAFVGKAILEKASGASRSSTKEKKMVGKSDSEAKIQDIPP------- 240
           PNNQEIKKQHA+LRAFVGKAILEKASGASRSSTK KK + KSDS+AKIQDIPP       
Sbjct: 181 PNNQEIKKQHADLRAFVGKAILEKASGASRSSTKNKKTLKKSDSDAKIQDIPPVSSSTSR 240

Query: 241 -----------ENGGEKAVKESARLEGTEGRSTGAEIRYKREATNGVHKDPNSNLGALER 300
                      ENGG  AVK SARLE +E  S+GAEI  K+ ATNG HKD +S L ALER
Sbjct: 241 TGLLAARERVEENGGGNAVKTSARLEESEDTSSGAEITSKKVATNGFHKDSSSYLSALER 300

Query: 301 NHVSRKQELKPSVQELASRAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQAQLLK 360
           +H+ RKQELK SV ELAS+AASRSMVEAAKNI+APTTAYQFEVSWRGFSGD+ALQA+LLK
Sbjct: 301 DHLPRKQELKASVYELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSGDQALQARLLK 360

Query: 361 AISPAKLPPIFKNALSAPILIDIVKCVATFFTEEMALAISFLENLAKVPRFSILMMCLPS 419
            ISPAKLP IFK+AL+APILIDIVKCVATFF EE ALAISFLENL  VPRFSILMMCL S
Sbjct: 361 TISPAKLPQIFKDALTAPILIDIVKCVATFFIEEPALAISFLENLVNVPRFSILMMCLSS 420

[Close]

BLAST of Cp4.1LG07g08510 vs. TrEMBL
Match: A0A067JV15_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23222 PE=4 SV=1)

HSP 1 Score: 447.6 bits (1150), Expect = 1.7e-122
Identity = 258/465 (55.48%), Postives = 321/465 (69.03%), Query Frame = 1


Query: 1   MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGRQPVKATAAD- 60
           MA    KHGRDQ LDFQGFLNDLQDWELSL  +DKK+KPH+  K  E  R   K +A D 
Sbjct: 1   MARVPTKHGRDQALDFQGFLNDLQDWELSLKDKDKKMKPHSSDKNSESRRSTGKTSAIDS 60

Query: 61  ---------YLKHYDAVKSLSTKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSI 120
                    YL+++DA++ + +    E+S VDA SEKE GNEYFKQKK+KEAI CYSRSI
Sbjct: 61  SRGSSGQHDYLRNFDAIERIPSSFIAEESAVDATSEKELGNEYFKQKKYKEAIECYSRSI 120

Query: 121 ALSPT-----------------AEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEAL 180
           ALSPT                  EAEDDCTEALNLDDRYIKAYSRRATARKELG+ K++L
Sbjct: 121 ALSPTAVAYANRAMAYLKIRKFQEAEDDCTEALNLDDRYIKAYSRRATARKELGRFKKSL 180

Query: 181 EDAEFAQRLEPNNQEIKKQHAELRAFVGKAILEKASGASRSSTKEKKMVGKSDSEA---K 240
           ED+EFA RLEPNNQE+KKQ+AE++    K IL+KASG +RSS +  +  G+S+++    +
Sbjct: 181 EDSEFALRLEPNNQEVKKQYAEVKMLYDKEILQKASGVARSSVQGTQKGGRSETKVNGYE 240

Query: 241 IQDIPP---------------ENGGEKAVKESARLEGTEGRSTGAEIRYKREATNGVHKD 300
           +  +P                E G  +  ++S  +E  E +        + +A N  + D
Sbjct: 241 VNSVPSITQRTSVSTSQKGKNEQGAVEVPEKSTSVEEMENKILRVGSSIEGQA-NYSYTD 300

Query: 301 --PNSNLGALERNHVSRKQELKPSVQELASRAASRSMVEAAKNIVAPTTAYQFEVSWRGF 360
             P+SN  + +R +  RKQ+LK SVQELASRAASR+M EAAKNI  PT+AYQFEVSWRGF
Sbjct: 301 AMPSSNADSFQRYNRMRKQDLKASVQELASRAASRAMAEAAKNITPPTSAYQFEVSWRGF 360

Query: 361 SGDRALQAQLLKAISPAKLPPIFKNALSAPILIDIVKCVATFFTEEMALAISFLENLAKV 419
           SGDR LQ +LLKA+SP+ LP I KNALSA +LIDI+KCVATFF ++  LA+ +LENLAKV
Sbjct: 361 SGDRVLQTRLLKAMSPSALPQILKNALSASMLIDIIKCVATFFIDDTNLAVKYLENLAKV 420

[Close]

BLAST of Cp4.1LG07g08510 vs. TrEMBL
Match: U5GD67_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s01710g PE=4 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 5.8e-110
Identity = 244/468 (52.14%), Postives = 309/468 (66.03%), Query Frame = 1


Query: 1   MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEK---EGGRQPVKATA 60
           MA   GKHGRDQ LD          WEL L   DKK+K  + + +    E GR   K +A
Sbjct: 1   MARVPGKHGRDQALD----------WEL-LKDTDKKMKKKSRASDVKIGEDGRSEGKTSA 60

Query: 61  AD----------YLKHYDAVKSLSTKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYS 120
           AD          Y +++ A+  LS+   T++  VDA +EKE GNEYFKQKKF EAI CYS
Sbjct: 61  ADSSRSGSGQYEYSRNFGAINRLSSSFTTDEITVDATTEKELGNEYFKQKKFNEAIECYS 120

Query: 121 RSIALSPT-----------------AEAEDDCTEALNLDDRYIKAYSRRATARKELGKAK 180
           RSIALSPT                  EAEDDCTEALNLDDRYIKAYSRRATARKELGK K
Sbjct: 121 RSIALSPTAVAYANRAMAYLKIKRFREAEDDCTEALNLDDRYIKAYSRRATARKELGKLK 180

Query: 181 EALEDAEFAQRLEPNNQEIKKQHAELRAFVGKAILEKASGASRSSTKEKKMVGKSDSEAK 240
           E++ED+EFA +LEPNNQEIKKQ+AE+++   K IL+KASG  RSS +  +  G+S++   
Sbjct: 181 ESIEDSEFALKLEPNNQEIKKQYAEVKSLYEKEILQKASGTLRSSLQGTQQGGRSEASVN 240

Query: 241 IQDIPP------ENGGEKAVKESARLEGTEGRSTGA--------EIRYKREATNGVHKD- 300
              + P      + G   + K++ +LE  E              E+R + ++   V  D 
Sbjct: 241 GHAVHPVSIATQKTGVSASKKDNTKLEQEENDGNNLVKKSVHVKELRNRSKSDGHVGNDS 300

Query: 301 -----PNSNLGALERNHVSRKQELKPSVQELASRAASRSMVEAAKNIVAPTTAYQFEVSW 360
                P+S++ ++++N+ +R+QELK SV ELAS+AASR+M EAAKNI  P +AYQFEVSW
Sbjct: 301 PANATPSSSVESVQKNNRTRRQELKTSVIELASQAASRAMAEAAKNITPPNSAYQFEVSW 360

Query: 361 RGFSGDRALQAQLLKAISPAKLPPIFKNALSAPILIDIVKCVATFFTEEMALAISFLENL 419
           +GFSGDRALQA LLK  SP+ LP IFKNALS PILIDI+KCVA+FF ++M  A+ +LENL
Sbjct: 361 QGFSGDRALQAHLLKVTSPSALPQIFKNALSVPILIDIIKCVASFFNDDMDFAVKYLENL 420

[Close]

BLAST of Cp4.1LG07g08510 vs. TrEMBL
Match: A0A0R0E971_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G096900 PE=4 SV=1)

HSP 1 Score: 401.4 bits (1030), Expect = 1.4e-108
Identity = 241/450 (53.56%), Postives = 296/450 (65.78%), Query Frame = 1


Query: 14  LDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGRQPVKATAADYLKHYDAVKS---- 73
           +DF GFLNDLQDWE S   + +  K +A S    G     KA+  D +   +A  S    
Sbjct: 1   MDFHGFLNDLQDWEFSRKDKARPQKENASSSRITGSVGVEKASKGDTISFDNARNSPGQY 60

Query: 74  -LSTKSHTEQSFV-----DAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPTA------- 133
            LS  +H   SFV     DAASEK+ GNE+FKQKKFKEA  CYSRSIALSPTA       
Sbjct: 61  DLSRINHLHSSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRA 120

Query: 134 ----------EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNN 193
                     EAEDDCTEALNLDDRYIKAYSRRATARKELGK KE+++DAEFA RLEPNN
Sbjct: 121 MANIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAEFALRLEPNN 180

Query: 194 QEIKKQHAELRAFVGKAILEKASGASRSSTKEKKMVGKSDSEAKIQDIPP---------- 253
           QEIKKQ+A+ ++F  K IL+KASG  RS+ +  + VGKS+ +     I P          
Sbjct: 181 QEIKKQYADAKSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHPISRSTQKSGL 240

Query: 254 --------ENGGEKAVKESARLEGTEGRSTGAEIRYKREATNGVHKDPNSNLGALERNHV 313
                   +N  +  VKES   E  +GR   A    + +  +G     +++    +RNH 
Sbjct: 241 AEVHHHKKDNKRQILVKESLLTEDVDGREIKARSWPQSQGDDGSKGGLSASNSLEQRNHR 300

Query: 314 SRKQELKPSVQELASRAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQAQLLKAIS 373
             K E+K SVQ+LASRAASR+M EAAKN+  PTTAYQFEVSWR FSGD ALQA+LLKAIS
Sbjct: 301 ITKPEMKASVQQLASRAASRAMSEAAKNVTPPTTAYQFEVSWRAFSGDLALQARLLKAIS 360

Query: 374 PAKLPPIFKNALSAPILIDIVKCVATFFTEEMALAISFLENLAKVPRFSILMMCLPSNEK 419
           P +LP IFKNALS+ ILI+I+KC+A+ FTE+M L +S+LE+L KVPRF +++MCL S  K
Sbjct: 361 PHELPKIFKNALSSTILIEIIKCLASLFTEDMDLVVSYLEHLTKVPRFDVIVMCLSSTNK 420

[Close]

BLAST of Cp4.1LG07g08510 vs. TrEMBL
Match: A0A0B2QTW7_GLYSO (RNA polymerase II-associated protein 3 OS=Glycine soja GN=glysoja_046388 PE=4 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 5.4e-108
Identity = 241/455 (52.97%), Postives = 296/455 (65.05%), Query Frame = 1


Query: 14  LDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGRQPVKATAADYLKHYDAVKS---- 73
           +DF GFLNDLQDWE S   + +  K +A S    G     KA+  D +   +A  S    
Sbjct: 1   MDFHGFLNDLQDWEFSRKDKARPQKENASSSRITGSVGVEKASKGDTISFDNARNSPGQY 60

Query: 74  -LSTKSHTEQSFV-----DAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPTA------- 133
            LS  +H   SFV     DAASEK+ GNE+FKQKKFKEA  CYSRSIALSPTA       
Sbjct: 61  DLSRINHLHSSFVPEDVPDAASEKDLGNEFFKQKKFKEARDCYSRSIALSPTAVAYANRA 120

Query: 134 ---------------EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQR 193
                          EAEDDCTEALNLDDRYIKAYSRRATARKELGK KE+++DAEFA R
Sbjct: 121 MANIKLRRQAYVLFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMDDAEFALR 180

Query: 194 LEPNNQEIKKQHAELRAFVGKAILEKASGASRSSTKEKKMVGKSDSEAKIQDIPP----- 253
           LEPNNQEIKKQ+A+ ++F  K IL+KASG  RS+ +  + VGKS+ +     I P     
Sbjct: 181 LEPNNQEIKKQYADAKSFYEKDILQKASGVLRSTVQGTQKVGKSEEKVNGDSIHPISRST 240

Query: 254 -------------ENGGEKAVKESARLEGTEGRSTGAEIRYKREATNGVHKDPNSNLGAL 313
                        +N  +  VKES   E  +GR   A    + +  +G     +++    
Sbjct: 241 QKSGLAEVHHHKKDNKRQILVKESLLTEDVDGREIKARSWPQSQGDDGSKGGLSASNSLE 300

Query: 314 ERNHVSRKQELKPSVQELASRAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQAQL 373
           +RNH   K E+K SVQ+LASRAASR+M EAAKN+  PTTAYQFEVSWR FSGD ALQA+L
Sbjct: 301 QRNHRITKPEMKASVQQLASRAASRAMSEAAKNVTPPTTAYQFEVSWRAFSGDLALQARL 360

Query: 374 LKAISPAKLPPIFKNALSAPILIDIVKCVATFFTEEMALAISFLENLAKVPRFSILMMCL 419
           LKAISP +LP IFKNALS+ ILI+I+KC+A+ FTE+M L +S+LE+L KVPRF +++MCL
Sbjct: 361 LKAISPHELPKIFKNALSSTILIEIIKCLASLFTEDMDLVVSYLEHLTKVPRFDVIVMCL 420

[Close]

BLAST of Cp4.1LG07g08510 vs. TAIR10
Match: AT1G56440.2 (AT1G56440.2 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 317.8 bits (813), Expect = 1.1e-86
Identity = 209/495 (42.22%), Postives = 282/495 (56.97%), Query Frame = 1


Query: 1   MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGR--QPVKATAA 60
           MA S  KHGRDQ  DFQGF NDLQDWELSL  +DKK+K    +         +P  +   
Sbjct: 1   MARSPSKHGRDQTQDFQGFFNDLQDWELSLKDKDKKIKQQPANSSNPSSETFRPSGSGKY 60

Query: 61  DYLKHYDAVKSLSTKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPT--- 120
           D+ K Y +++ LS+ S   +S +D++SEKEQGNE+FKQKKF EAI CYSRSIALSP    
Sbjct: 61  DFAKKYRSIRDLSS-SLIGESLLDSSSEKEQGNEFFKQKKFNEAIDCYSRSIALSPNAVT 120

Query: 121 --------------AEAEDDCTEALNLDDRYIKAY-----------------------SR 180
                          EAE DCTEALNLDDRYIKAY                        R
Sbjct: 121 YANRAMAYLKIKRYREAEVDCTEALNLDDRYIKAYSRRATARKELGMIKEAKEDAEFALR 180

Query: 181 RATARKELGK------------------------AKEALEDAEFAQRLEPNNQEIKKQHA 240
                +EL K                        A+E L+ +   ++++    E+  +  
Sbjct: 181 LEPESQELKKQYADIKSLLEKEIIEKATGAMQSTAQELLKTSGLDKKIQKPKTEMTSKPV 240

Query: 241 ELRAFVGKAILEKASGASRSSTKEKKMVGKSDSEAK----------IQDIPPENGGEKAV 300
            L A   + I++   G++ SS K  K++     E +          +     E   E ++
Sbjct: 241 TLVAKTNRDIVQPVLGSNESSGK--KLIENIQPEHRWNFRELISLYLSCYLQEKSKEGSM 300

Query: 301 KESARLEGTEGRS-TGAEIRYKREATNGVHKDPNSNLGALERNHVSRKQELKPSVQELAS 360
           K  A  E  + +  T     Y++EA      D N    +   N VS++ ELKPSVQELA+
Sbjct: 301 KIPAITEILDSKKVTPGSQSYEKEAKPS---DRNGTQPSGPENQVSKQLELKPSVQELAA 360

Query: 361 RAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQAQLLKAISPAKLPPIFKNALSAP 419
            AAS +M EA+KNI  P +AY+FE SWR FSGD AL++QLLK  +P+ LP IFKNAL++P
Sbjct: 361 HAASLAMTEASKNIKTPKSAYEFENSWRSFSGDSALRSQLLKVTTPSSLPQIFKNALTSP 420

[Close]

BLAST of Cp4.1LG07g08510 vs. TAIR10
Match: AT3G17970.1 (AT3G17970.1 translocon at the outer membrane of chloroplasts 64-III)

HSP 1 Score: 77.0 bits (188), Expect = 3.1e-14
Identity = 50/127 (39.37%), Postives = 71/127 (55.91%), Query Frame = 1


Query: 71  STKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPT--------------- 130
           S K+ T++   + A  KE+GN+ FK+K +++AIG YS +I LS                 
Sbjct: 464 SKKAITKEESAEIA--KEKGNQAFKEKLWQKAIGLYSEAIKLSDNNATYYSNRAAAYLEL 523

Query: 131 ---AEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQ 180
               +AE+DCT+A+ LD + +KAY RR TAR+ LG  K A+ED  +A  LEPNN+     
Sbjct: 524 GGFLQAEEDCTKAITLDKKNVKAYLRRGTAREMLGDCKGAIEDFRYALVLEPNNKRASLS 583

[Close]

BLAST of Cp4.1LG07g08510 vs. TAIR10
Match: AT5G09420.1 (AT5G09420.1 translocon at the outer membrane of chloroplasts 64-V)

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-08
Identity = 41/130 (31.54%), Postives = 64/130 (49.23%), Query Frame = 1


Query: 69  SLSTKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPT------------- 128
           +L+  S T  +   +   KE+GN  +K K++ +A+  Y+ +I L+               
Sbjct: 474 NLAPVSDTNGNMEASEVMKEKGNAAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFL 533

Query: 129 -----AEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIK 181
                 +AE DCT+A+ +D + +KAY RR TAR+ L + KEA  D   A  LEP N+  K
Sbjct: 534 ELCCFQQAEQDCTKAMLIDKKNVKAYLRRGTARESLVRYKEAAADFRHALVLEPQNKTAK 593

[Close]

BLAST of Cp4.1LG07g08510 vs. TAIR10
Match: AT2G42810.2 (AT2G42810.2 protein phosphatase 5.2)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-07
Identity = 47/152 (30.92%), Postives = 71/152 (46.71%), Query Frame = 1


Query: 73  KSHTEQSFVDAASE-KEQGNEYFKQKKFKEAIGCYSRSIALSPT---------------- 132
           ++  E S V  A E K Q NE FK  K+  AI  Y+++I L+                  
Sbjct: 2   ETKNENSDVSRAEEFKSQANEAFKGHKYSSAIDLYTKAIELNSNNAVYWANRAFAHTKLE 61

Query: 133 --AEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLEPNNQEIKKQH 192
               A  D ++A+ +D RY K Y RR  A   +GK K+AL+D +  +RL PN+ +  ++ 
Sbjct: 62  EYGSAIQDASKAIEVDSRYSKGYYRRGAAYLAMGKFKDALKDFQQVKRLSPNDPDATRKL 121

Query: 193 AELRAFVGKAILEKASGASRSSTKEKKMVGKS 206
            E    V K   E+A     S   E++ V +S
Sbjct: 122 KECEKAVMKLKFEEAISVPVS---ERRSVAES 150

[Close]

BLAST of Cp4.1LG07g08510 vs. NCBI nr
Match: gi|659070087|ref|XP_008453348.1| (PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Cucumis melo])

HSP 1 Score: 639.4 bits (1648), Expect = 4.5e-180
Identity = 356/453 (78.59%), Postives = 373/453 (82.34%), Query Frame = 1


Query: 1   MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGRQPVKATAADY 60
           MADSSGKHGRD PLDFQGFLNDLQDWE+S  G+DKKLKP AI KEKE  RQ  KA+AADY
Sbjct: 67  MADSSGKHGRDHPLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADY 126

Query: 61  LKHYDAVKSLSTKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPTA---- 120
           LK YDAV  LS    TEQSFVDAASEKEQGNEYFKQKKFKEAI CYSRSIALSPTA    
Sbjct: 127 LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 186

Query: 121 -------------EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
                        EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 187 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 246

Query: 181 PNNQEIKKQHAELRAFVGKAILEKASGASRSSTKEKKMVGKSDSEAKIQDIPP------- 240
           PNNQEIKKQHA+LRAFVGKAILEKASGASRSS K+KKM+ KSDS+AKIQDIPP       
Sbjct: 247 PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR 306

Query: 241 -----------ENGGEKAVKESARLEGTEGRSTGAEIRYKREATNGVHKDPNSNLGALER 300
                      ENGGE AVK SAR+E  E  ST AEI  K+ ATNG HKD +S L ALER
Sbjct: 307 TGLLAARERVEENGGENAVKTSARVEENEDISTRAEIACKKVATNGFHKDSSSYLWALER 366

Query: 301 NHVSRKQELKPSVQELASRAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQAQLLK 360
           +H+ RK ELK SVQELAS+AASRSMVEAAKNI+APTTAYQFEVSWRGFS D+ALQA LLK
Sbjct: 367 DHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLK 426

Query: 361 AISPAKLPPIFKNALSAPILIDIVKCVATFFTEEMALAISFLENLAKVPRFSILMMCLPS 419
            ISPAKLP IFKNAL+APILIDIVKCVATFFTEE ALAISFLENL KVPRFSILMMCL S
Sbjct: 427 TISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSS 486

[Close]

BLAST of Cp4.1LG07g08510 vs. NCBI nr
Match: gi|449454004|ref|XP_004144746.1| (PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Cucumis sativus])

HSP 1 Score: 630.9 bits (1626), Expect = 1.6e-177
Identity = 351/453 (77.48%), Postives = 371/453 (81.90%), Query Frame = 1


Query: 1   MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGRQPVKATAADY 60
           MADSS KHGRDQ LDFQGFLNDLQDWE+S  G+DKKLKP AI KEKE  RQ  KA+AADY
Sbjct: 1   MADSSAKHGRDQLLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADY 60

Query: 61  LKHYDAVKSLSTKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPTA---- 120
           +K YDAV  LS    TE SFVDAASEKEQGNEYFKQKKFKEAI CYSRSIALSPTA    
Sbjct: 61  MKQYDAVNRLSRNFQTEGSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 120

Query: 121 -------------EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
                        EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180

Query: 181 PNNQEIKKQHAELRAFVGKAILEKASGASRSSTKEKKMVGKSDSEAKIQDIPP------- 240
           PNNQEIKKQHA+LRAFVGKAILEKASGASRSSTK KK + KSDS+AKIQDIPP       
Sbjct: 181 PNNQEIKKQHADLRAFVGKAILEKASGASRSSTKNKKTLKKSDSDAKIQDIPPVSSSTSR 240

Query: 241 -----------ENGGEKAVKESARLEGTEGRSTGAEIRYKREATNGVHKDPNSNLGALER 300
                      ENGG  AVK SARLE +E  S+GAEI  K+ ATNG HKD +S L ALER
Sbjct: 241 TGLLAARERVEENGGGNAVKTSARLEESEDTSSGAEITSKKVATNGFHKDSSSYLSALER 300

Query: 301 NHVSRKQELKPSVQELASRAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQAQLLK 360
           +H+ RKQELK SV ELAS+AASRSMVEAAKNI+APTTAYQFEVSWRGFSGD+ALQA+LLK
Sbjct: 301 DHLPRKQELKASVYELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSGDQALQARLLK 360

Query: 361 AISPAKLPPIFKNALSAPILIDIVKCVATFFTEEMALAISFLENLAKVPRFSILMMCLPS 419
            ISPAKLP IFK+AL+APILIDIVKCVATFF EE ALAISFLENL  VPRFSILMMCL S
Sbjct: 361 TISPAKLPQIFKDALTAPILIDIVKCVATFFIEEPALAISFLENLVNVPRFSILMMCLSS 420

[Close]

BLAST of Cp4.1LG07g08510 vs. NCBI nr
Match: gi|659070089|ref|XP_008453357.1| (PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Cucumis melo])

HSP 1 Score: 610.5 bits (1573), Expect = 2.2e-171
Identity = 346/453 (76.38%), Postives = 363/453 (80.13%), Query Frame = 1


Query: 1   MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGRQPVKATAADY 60
           MADSSGKHGRD PLD          WE+S  G+DKKLKP AI KEKE  RQ  KA+AADY
Sbjct: 67  MADSSGKHGRDHPLD----------WEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADY 126

Query: 61  LKHYDAVKSLSTKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPTA---- 120
           LK YDAV  LS    TEQSFVDAASEKEQGNEYFKQKKFKEAI CYSRSIALSPTA    
Sbjct: 127 LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 186

Query: 121 -------------EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
                        EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 187 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 246

Query: 181 PNNQEIKKQHAELRAFVGKAILEKASGASRSSTKEKKMVGKSDSEAKIQDIPP------- 240
           PNNQEIKKQHA+LRAFVGKAILEKASGASRSS K+KKM+ KSDS+AKIQDIPP       
Sbjct: 247 PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR 306

Query: 241 -----------ENGGEKAVKESARLEGTEGRSTGAEIRYKREATNGVHKDPNSNLGALER 300
                      ENGGE AVK SAR+E  E  ST AEI  K+ ATNG HKD +S L ALER
Sbjct: 307 TGLLAARERVEENGGENAVKTSARVEENEDISTRAEIACKKVATNGFHKDSSSYLWALER 366

Query: 301 NHVSRKQELKPSVQELASRAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQAQLLK 360
           +H+ RK ELK SVQELAS+AASRSMVEAAKNI+APTTAYQFEVSWRGFS D+ALQA LLK
Sbjct: 367 DHLPRKPELKASVQELASQAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLK 426

Query: 361 AISPAKLPPIFKNALSAPILIDIVKCVATFFTEEMALAISFLENLAKVPRFSILMMCLPS 419
            ISPAKLP IFKNAL+APILIDIVKCVATFFTEE ALAISFLENL KVPRFSILMMCL S
Sbjct: 427 TISPAKLPQIFKNALTAPILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSS 486

[Close]

BLAST of Cp4.1LG07g08510 vs. NCBI nr
Match: gi|659070091|ref|XP_008453365.1| (PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Cucumis melo])

HSP 1 Score: 585.5 bits (1508), Expect = 7.7e-164
Identity = 328/435 (75.40%), Postives = 344/435 (79.08%), Query Frame = 1


Query: 1   MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGRQPVKATAADY 60
           MADSSGKHGRD PLDFQGFLNDLQDWE+S  G+DKKLKP AI KEKE  RQ  KA+AADY
Sbjct: 67  MADSSGKHGRDHPLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADY 126

Query: 61  LKHYDAVKSLSTKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPTA---- 120
           LK YDAV  LS    TEQSFVDAASEKEQGNEYFKQKKFKEAI CYSRSIALSPTA    
Sbjct: 127 LKQYDAVNRLSRNFQTEQSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 186

Query: 121 -------------EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
                        EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 187 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 246

Query: 181 PNNQEIKKQHAELRAFVGKAILEKASGASRSSTKEKKMVGKSDSEAKIQDIPPENGGEKA 240
           PNNQEIKKQHA+LRAFVGKAILEKASGASRSS K+KKM+ KSDS+AKIQDIPP +     
Sbjct: 247 PNNQEIKKQHADLRAFVGKAILEKASGASRSSPKDKKMLKKSDSDAKIQDIPPVSSSTSR 306

Query: 241 VKESARLEGTEGRSTGAEIRYKREATNGVHKDPNSNLGALERNHVSRKQELKPSVQELAS 300
               A  E                               +ER+H+ RK ELK SVQELAS
Sbjct: 307 TGLLAARE------------------------------RVERDHLPRKPELKASVQELAS 366

Query: 301 RAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQAQLLKAISPAKLPPIFKNALSAP 360
           +AASRSMVEAAKNI+APTTAYQFEVSWRGFS D+ALQA LLK ISPAKLP IFKNAL+AP
Sbjct: 367 QAASRSMVEAAKNIIAPTTAYQFEVSWRGFSDDQALQACLLKTISPAKLPQIFKNALTAP 426

Query: 361 ILIDIVKCVATFFTEEMALAISFLENLAKVPRFSILMMCLPSNEKSDLLKIWDGVFCDEA 419
           ILIDIVKCVATFFTEE ALAISFLENL KVPRFSILMMCL S+EK DLLKIWD VFCDEA
Sbjct: 427 ILIDIVKCVATFFTEEPALAISFLENLVKVPRFSILMMCLSSSEKFDLLKIWDEVFCDEA 471

[Close]

BLAST of Cp4.1LG07g08510 vs. NCBI nr
Match: gi|778667104|ref|XP_011648870.1| (PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 575.1 bits (1481), Expect = 1.0e-160
Identity = 323/435 (74.25%), Postives = 341/435 (78.39%), Query Frame = 1


Query: 1   MADSSGKHGRDQPLDFQGFLNDLQDWELSLNGRDKKLKPHAISKEKEGGRQPVKATAADY 60
           MADSS KHGRDQ LDFQGFLNDLQDWE+S  G+DKKLKP AI KEKE  RQ  KA+AADY
Sbjct: 1   MADSSAKHGRDQLLDFQGFLNDLQDWEVSFKGKDKKLKPQAIGKEKEDRRQTEKASAADY 60

Query: 61  LKHYDAVKSLSTKSHTEQSFVDAASEKEQGNEYFKQKKFKEAIGCYSRSIALSPTA---- 120
           +K YDAV  LS    TE SFVDAASEKEQGNEYFKQKKFKEAI CYSRSIALSPTA    
Sbjct: 61  MKQYDAVNRLSRNFQTEGSFVDAASEKEQGNEYFKQKKFKEAIDCYSRSIALSPTAVAFA 120

Query: 121 -------------EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180
                        EAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE
Sbjct: 121 NRAMAYLKIRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKAKEALEDAEFAQRLE 180

Query: 181 PNNQEIKKQHAELRAFVGKAILEKASGASRSSTKEKKMVGKSDSEAKIQDIPPENGGEKA 240
           PNNQEIKKQHA+LRAFVGKAILEKASGASRSSTK KK + KSDS+AKIQDIPP +     
Sbjct: 181 PNNQEIKKQHADLRAFVGKAILEKASGASRSSTKNKKTLKKSDSDAKIQDIPPVSSSTSR 240

Query: 241 VKESARLEGTEGRSTGAEIRYKREATNGVHKDPNSNLGALERNHVSRKQELKPSVQELAS 300
               A  E                               +ER+H+ RKQELK SV ELAS
Sbjct: 241 TGLLAARE------------------------------RVERDHLPRKQELKASVYELAS 300

Query: 301 RAASRSMVEAAKNIVAPTTAYQFEVSWRGFSGDRALQAQLLKAISPAKLPPIFKNALSAP 360
           +AASRSMVEAAKNI+APTTAYQFEVSWRGFSGD+ALQA+LLK ISPAKLP IFK+AL+AP
Sbjct: 301 QAASRSMVEAAKNIIAPTTAYQFEVSWRGFSGDQALQARLLKTISPAKLPQIFKDALTAP 360

Query: 361 ILIDIVKCVATFFTEEMALAISFLENLAKVPRFSILMMCLPSNEKSDLLKIWDGVFCDEA 419
           ILIDIVKCVATFF EE ALAISFLENL  VPRFSILMMCL S+EK DLLKIWD VFCDEA
Sbjct: 361 ILIDIVKCVATFFIEEPALAISFLENLVNVPRFSILMMCLSSSEKFDLLKIWDEVFCDEA 405

The following BLAST results are available for this feature:

BLAST of Cp4.1LG07g08510 vs. Swiss-Prot


Match Name	E-value	Identity	Description
OE64C_ARATH	5.5e-13	39.37	Outer envelope protein 64, chloroplastic OS=Arabidopsis thaliana GN=OEP64 PE=1 S...	[more]
RPAP3_MOUSE	1.6e-12	26.65	RNA polymerase II-associated protein 3 OS=Mus musculus GN=Rpap3 PE=1 SV=1	[more]
RPAP3_HUMAN	4.7e-12	34.12	RNA polymerase II-associated protein 3 OS=Homo sapiens GN=RPAP3 PE=1 SV=2	[more]
RPAP3_RAT	2.3e-11	27.48	RNA polymerase II-associated protein 3 OS=Rattus norvegicus GN=Rpap3 PE=1 SV=1	[more]
RPAP3_CHICK	2.0e-10	26.80	RNA polymerase II-associated protein 3 OS=Gallus gallus GN=RPAP3 PE=2 SV=1	[more]

BLAST of Cp4.1LG07g08510 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGI8_CUCSA	1.1e-177	77.48	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G034580 PE=4 SV=1	[more]
A0A067JV15_JATCU	1.7e-122	55.48	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23222 PE=4 SV=1	[more]
U5GD67_POPTR	5.8e-110	52.14	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s01710g PE=4 SV=1	[more]
A0A0R0E971_SOYBN	1.4e-108	53.56	Uncharacterized protein OS=Glycine max GN=GLYMA_20G096900 PE=4 SV=1	[more]
A0A0B2QTW7_GLYSO	5.4e-108	52.97	RNA polymerase II-associated protein 3 OS=Glycine soja GN=glysoja_046388 PE=4 SV...	[more]

BLAST of Cp4.1LG07g08510 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G56440.2	1.1e-86	42.22	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT3G17970.1	3.1e-14	39.37	translocon at the outer membrane of chloroplasts 64-III	[more]
AT5G09420.1	1.5e-08	31.54	translocon at the outer membrane of chloroplasts 64-V	[more]
AT2G42810.2	2.2e-07	30.92	protein phosphatase 5.2	[more]

BLAST of Cp4.1LG07g08510 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659070087\|ref\|XP_008453348.1\|	4.5e-180	78.59	PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Cucumis melo]	[more]
gi\|449454004\|ref\|XP_004144746.1\|	1.6e-177	77.48	PREDICTED: RNA polymerase II-associated protein 3 isoform X1 [Cucumis sativus]	[more]
gi\|659070089\|ref\|XP_008453357.1\|	2.2e-171	76.38	PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Cucumis melo]	[more]
gi\|659070091\|ref\|XP_008453365.1\|	7.7e-164	75.40	PREDICTED: RNA polymerase II-associated protein 3 isoform X3 [Cucumis melo]	[more]
gi\|778667104\|ref\|XP_011648870.1\|	1.0e-160	74.25	PREDICTED: RNA polymerase II-associated protein 3 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **INTERPRO**
Term	Definition
IPR025986	RPAP3-like_C
IPR019734	TPR_repeat
IPR013026	TPR-contain_dom
IPR011990	TPR-like_helical_dom_sf

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG07g08510.1	Cp4.1LG07g08510.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 82..187 score: 2.2
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 84..183 score: 9.02
IPR013026	Tetratricopeptide repeat-containing domain	PROFILE	PS50293	TPR_REGION	coord: 83..166 score: 9
IPR019734	Tetratricopeptide repeat	SMART	SM00028	tpr_5	coord: 83..116 score: 0.0012coord: 133..166 score: 0
IPR019734	Tetratricopeptide repeat	PROFILE	PS50005	TPR	coord: 83..116 score: 9.529coord: 133..166 score: 8
IPR025986	RNA-polymerase II-associated protein 3-like, C-terminal domain	PFAM	PF13877	RPAP3_C	coord: 299..388 score: 4.2
None	No IPR available	unknown	Coil	Coil	coord: 139..159 scor
None	No IPR available	PANTHER	PTHR22904	TPR REPEAT CONTAINING PROTEIN	coord: 264..349 score: 2.5E-56coord: 76..197 score: 2.5
None	No IPR available	PANTHER	PTHR22904:SF323	CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT	coord: 264..349 score: 2.5E-56coord: 76..197 score: 2.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cp4.1LG07g08510	Cucsa.090610	Cucumber (Gy14) v1	cgycpeB0177
Cp4.1LG07g08510	CmaCh12G010220	Cucurbita maxima (Rimu)	cmacpeB203
Cp4.1LG07g08510	CmoCh12G010280	Cucurbita moschata (Rifu)	cmocpeB175
Cp4.1LG07g08510	Cla019975	Watermelon (97103) v1	cpewmB806
Cp4.1LG07g08510	Csa2G034580	Cucumber (Chinese Long) v2	cpecuB820
Cp4.1LG07g08510	MELO3C004179	Melon (DHL92) v3.5.1	cpemeB771
Cp4.1LG07g08510	ClCG02G014870	Watermelon (Charleston Gray)	cpewcgB733
Cp4.1LG07g08510	CSPI02G04750	Wild cucumber (PI 183967)	cpecpiB821
Cp4.1LG07g08510	Lsi11G006400	Bottle gourd (USVL1VR-Ls)	cpelsiB659
Cp4.1LG07g08510	MELO3C004179.2	Melon (DHL92) v3.6.1	cpemedB907
Cp4.1LG07g08510	CsaV3_2G007140	Cucumber (Chinese Long) v3	cpecucB1014
Cp4.1LG07g08510	Bhi06G001341	Wax gourd	cpewgoB1015
Cp4.1LG07g08510	CsGy2G004880	Cucumber (Gy14) v2	cgybcpeB271
Cp4.1LG07g08510	Carg25581	Silver-seed gourd	carcpeB1293

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG07g08510	Silver-seed gourd	carcpeB0108
Cp4.1LG07g08510	Silver-seed gourd	carcpeB0805
Cp4.1LG07g08510	Cucurbita pepo (Zucchini)	cpecpeB139
Cp4.1LG07g08510	Cucurbita maxima (Rimu)	cmacpeB789
Cp4.1LG07g08510	Cucurbita moschata (Rifu)	cmocpeB742
Cp4.1LG07g08510	Bottle gourd (USVL1VR-Ls)	cpelsiB682
Cp4.1LG07g08510	Watermelon (97103) v1	cpewmB793
Cp4.1LG07g08510	Melon (DHL92) v3.5.1	cpemeB748
Cp4.1LG07g08510	Melon (DHL92) v3.6.1	cpemedB885