Cp4.1LG06g09760 (gene) Cucurbita pepo (Zucchini) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cp4.1LG06g09760
Type	gene
Organism	Cucurbita pepo (Cucurbita pepo (Zucchini))
Description	Unknown protein
Location	Cp4.1LG06 : 7670214 .. 7670444 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACGATGAATGTGATGGTGGAGATTGAGGCGGAGGAAATGGATGAGGGTCTGAGTTTGATGGAGGATTTGAAGTCGGGAGGTTTGAATATTAGTAGCCACACGGAAATGCCAGGAAGGGTCAAAATAATTGGATTCATCAAGAAAAGGTTTGAGGTTAAAATGAACTGCTCATCTACTTTCAATACTAAAACCCAAATGACTCAAGGGAAGATTGTGATAAGCATGTAA

mRNA sequence

ATGACGATGAATGTGATGGTGGAGATTGAGGCGGAGGAAATGGATGAGGGTCTGAGTTTGATGGAGGATTTGAAGTCGGGAGGTTTGAATATTAGTAGCCACACGGAAATGCCAGGAAGGGTCAAAATAATTGGATTCATCAAGAAAAGGTTTGAGGTTAAAATGAACTGCTCATCTACTTTCAATACTAAAACCCAAATGACTCAAGGGAAGATTGTGATAAGCATGTAA

Coding sequence (CDS)

ATGACGATGAATGTGATGGTGGAGATTGAGGCGGAGGAAATGGATGAGGGTCTGAGTTTGATGGAGGATTTGAAGTCGGGAGGTTTGAATATTAGTAGCCACACGGAAATGCCAGGAAGGGTCAAAATAATTGGATTCATCAAGAAAAGGTTTGAGGTTAAAATGAACTGCTCATCTACTTTCAATACTAAAACCCAAATGACTCAAGGGAAGATTGTGATAAGCATGTAA

Protein sequence

MTMNVMVEIEAEEMDEGLSLMEDLKSGGLNISSHTEMPGRVKIIGFIKKRFEVKMNCSSTFNTKTQMTQGKIVISM

Homology

[Close]

BLAST of Cp4.1LG06g09760 vs. TrEMBL
Match: A0A0A0KMH1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152140 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 1.7e-12
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 1   MTMNVMVEIEAEEMDEGLSLMEDLKSGGLNISSHTEMPGRVKIIGFIKKRFEVKMNCSST 60
           + MNV VEIE  +MD+  SL++D  SG L+ISS+TE+PGRVKI+G IKK + VK++CS T
Sbjct: 138 LRMNVTVEIEPWKMDDASSLIKDWNSGSLSISSYTEIPGRVKILGSIKKNYLVKISCSLT 197

Query: 61  FNTKTQMTQGK 72
           +N+K++  QG+
Sbjct: 198 YNSKSKTIQGQ 208

[Close]

BLAST of Cp4.1LG06g09760 vs. TAIR10
Match: AT2G46150.1 (AT2G46150.1 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family)

HSP 1 Score: 47.0 bits (110), Expect = 6.1e-06
Identity = 29/69 (42.03%), Postives = 41/69 (59.42%), Query Frame = 1


Query: 3   MNVMVEIEAEEM--DEGLSLMEDLKSGGLNISSHTEMPGRVKIIGFIKKRFEVKMNCSST 62
           MNV V+I  + +  D GL   E  +SG +N+ S+T + G+VKI+G +KK   VKMNC+  
Sbjct: 144 MNVTVDIMLDRILSDPGLG-REISRSGLVNVWSYTRVGGKVKIMGIVKKHVTVKMNCTMA 203

Query: 63  FNTKTQMTQ 70
            N   Q  Q
Sbjct: 204 VNITGQAIQ 211

[Close]

BLAST of Cp4.1LG06g09760 vs. NCBI nr
Match: gi|778708243|ref|XP_004143964.2| (PREDICTED: uncharacterized protein LOC101212153 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-12
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 1   MTMNVMVEIEAEEMDEGLSLMEDLKSGGLNISSHTEMPGRVKIIGFIKKRFEVKMNCSST 60
           + MNV VEIE  +MD+  SL++D  SG L+ISS+TE+PGRVKI+G IKK + VK++CS T
Sbjct: 370 LRMNVTVEIEPWKMDDASSLIKDWNSGSLSISSYTEIPGRVKILGSIKKNYLVKISCSLT 429

Query: 61  FNTKTQMTQGK 72
           +N+K++  QG+
Sbjct: 430 YNSKSKTIQGQ 440

[Close]

BLAST of Cp4.1LG06g09760 vs. NCBI nr
Match: gi|700194872|gb|KGN50049.1| (hypothetical protein Csa_5G152140 [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 2.4e-12
Identity = 39/71 (54.93%), Postives = 56/71 (78.87%), Query Frame = 1


Query: 1   MTMNVMVEIEAEEMDEGLSLMEDLKSGGLNISSHTEMPGRVKIIGFIKKRFEVKMNCSST 60
           + MNV VEIE  +MD+  SL++D  SG L+ISS+TE+PGRVKI+G IKK + VK++CS T
Sbjct: 138 LRMNVTVEIEPWKMDDASSLIKDWNSGSLSISSYTEIPGRVKILGSIKKNYLVKISCSLT 197

Query: 61  FNTKTQMTQGK 72
           +N+K++  QG+
Sbjct: 198 YNSKSKTIQGQ 208

[Close]

BLAST of Cp4.1LG06g09760 vs. NCBI nr
Match: gi|659073969|ref|XP_008437350.1| (PREDICTED: uncharacterized protein LOC103482794 [Cucumis melo])

HSP 1 Score: 73.2 bits (178), Expect = 2.2e-10
Identity = 35/69 (50.72%), Postives = 54/69 (78.26%), Query Frame = 1


Query: 1   MTMNVMVEIEAEEMDEGLSLMEDLKSGGLNISSHTEMPGRVKIIGFIKKRFEVKMNCSST 60
           + MNV V+IE  ++D+  SL++D  SG L+ISS+TE+PGRVK++G IKK + VK++CS T
Sbjct: 137 LKMNVTVKIEPWKIDDASSLIKDWNSGALSISSYTEIPGRVKLLGAIKKNYLVKISCSLT 196

Query: 61  FNTKTQMTQ 70
           +N+K++  Q
Sbjct: 197 YNSKSKTIQ 205

[Close]

BLAST of Cp4.1LG06g09760 vs. NCBI nr
Match: gi|729453557|ref|XP_010523771.1| (PREDICTED: uncharacterized protein LOC104802047 [Tarenaya hassleriana])

HSP 1 Score: 60.5 bits (145), Expect = 1.5e-06
Identity = 28/64 (43.75%), Postives = 46/64 (71.88%), Query Frame = 1


Query: 3   MNVMVEIEAEEMDEGLSLMEDLKSGGLNISSHTEMPGRVKIIGFIKKRFEVKMNCSSTFN 62
           MNV ++I A  +     L+ED+ SG +N++S++ + GRVKI+GF+K +  VKMNCS++FN
Sbjct: 143 MNVTLDIYAGRLMSDPGLLEDIGSGLMNVTSYSRVHGRVKILGFLKAQMTVKMNCSTSFN 202

Query: 63  TKTQ 67
             ++
Sbjct: 203 VTSR 206

[Close]

BLAST of Cp4.1LG06g09760 vs. NCBI nr
Match: gi|1009142618|ref|XP_015888819.1| (PREDICTED: uncharacterized protein LOC107423719 [Ziziphus jujuba])

HSP 1 Score: 58.2 bits (139), Expect = 7.5e-06
Identity = 30/69 (43.48%), Postives = 44/69 (63.77%), Query Frame = 1


Query: 1   MTMNVMVEIEAEEMDEGLSLMEDLKSGGLNISSHTEMPGRVKIIGFIKKRFEVKMNCSST 60
           M MN+ V+I  + M    +LM D+ SG L+++S++ + GR+KI+  IKK   VKMNCS T
Sbjct: 142 MRMNITVDIITDRMLSNPNLMSDVGSGLLSMNSYSSISGRIKILDIIKKHVVVKMNCSMT 201

Query: 61  FNTKTQMTQ 70
            N  +Q  Q
Sbjct: 202 VNISSQAIQ 210

The following BLAST results are available for this feature:

BLAST of Cp4.1LG06g09760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cp4.1LG06g09760 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMH1_CUCSA	1.7e-12	54.93	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G152140 PE=4 SV=1	[more]

BLAST of Cp4.1LG06g09760 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G46150.1	6.1e-06	42.03	Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein f...	[more]

BLAST of Cp4.1LG06g09760 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778708243\|ref\|XP_004143964.2\|	2.4e-12	54.93	PREDICTED: uncharacterized protein LOC101212153 [Cucumis sativus]	[more]
gi\|700194872\|gb\|KGN50049.1\|	2.4e-12	54.93	hypothetical protein Csa_5G152140 [Cucumis sativus]	[more]
gi\|659073969\|ref\|XP_008437350.1\|	2.2e-10	50.72	PREDICTED: uncharacterized protein LOC103482794 [Cucumis melo]	[more]
gi\|729453557\|ref\|XP_010523771.1\|	1.5e-06	43.75	PREDICTED: uncharacterized protein LOC104802047 [Tarenaya hassleriana]	[more]
gi\|1009142618\|ref\|XP_015888819.1\|	7.5e-06	43.48	PREDICTED: uncharacterized protein LOC107423719 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cp4.1LG06g09760.1	Cp4.1LG06g09760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita pepo
Date Performed: 2017-12-02


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 1..62 score: 5.3
None	No IPR available	PANTHER	PTHR31852:SF6	LATE EMBRYOGENESIS ABUNDANT HYDROXYPROLINE-RICH GLYCOPROTEIN	coord: 1..62 score: 5.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cp4.1LG06g09760	Cucurbita pepo (Zucchini)	cpecpeB460
Cp4.1LG06g09760	Cucurbita maxima (Rimu)	cmacpeB505
Cp4.1LG06g09760	Cucurbita moschata (Rifu)	cmocpeB464
Cp4.1LG06g09760	Bottle gourd (USVL1VR-Ls)	cpelsiB632