Cp4.1LG03g04550 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG03g04550
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG03 : 5474096 .. 5475837 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAATGAGAATGGAAGAGCGGTTTAGGTATGAATGTTTGGAGGGTGAAAGATCAATGGAAATTGAAAGAGAAGTGGTATGTGTTCCACATGAAGAGATGATGAACCACCCTCCATTAATGAACAATAAAAGCAGTTTTGGTCAGTATTTGGGCACAAATGAGCAGAATTTGAATGTGGAGGAGATGTTTGGAGACATGGGAAGCCATGGACACTTACAAGACAGCTTGAAGATGGGTAATAATGAATGGGATTTGGAAAGCTTCATGCAAGATATATCCTCATTGCCTCATTTCCTTTGATCTCCAACCTCTAAACCTCTACAAAATCTTCATTTATTTTACAATTCCTTTGGAAGGGGAAAACAAAAATCCCACATACACACACACATATATATATACATATATATATATATTCTTTGTCCCTCATTTCTTCATATATATATATATATATATTTCCCCATATATTATATGATTTCTTATCTGTCAATAAAACCCCACAAAATAAAAGAATGAACAGCTGAGGGAGTTAGAGGTGGGAAGGTAGATTGAAGATAAAGCAGTGTTTTGCAGTGCAAAAAAAAAGGGCTTCTGTTCTACAAATCCCAAGTTGAGAGGCAACTTTTCGTAAGTTTGTGTACCTTCAAAACATGGTGTTTTGTTAGCAGCAAAGGGTTTGGATCATTTGTTGTTTTTGTCATTTATGTGTACAAAAGCATATCAAGACATTTCTTTCCTTGATAAGACAATATTGTTTATATATTCATGTTTTAAACCCACATAATGTGTTACAATTCAGCTACTTTATTTCCTTATCAAGTAAACATGCATCCAATATATTGTTAAGAACATATGTACATAACATTATGAGAGAGAGTCAACATTTTGATCCTTGTTTTTAAAGTTATAGCTTTTGATCCTTGTTTTTAAAGTTATAGCTTAAATAAAATCACGACAAAGTAACATAAAACTCGAAAAGAACAACAAATGGGTAAGGAGGAGAGGAGAAGGGTGTATGGACCTTCAACCCAACCCGAAAACGAGCAAGAGATTTGAGTTAAAAAAGAGATAACTAATATTTTAACCATGCTCATTTGAAAATAACGTTAAGAATTAAGCTTACCTTACAAGTTAATGGATACAAAAAGTAGGTGAAAATATTATTTTAATCCTTGTCTAACTTTAGTCAGAATATTTTACCATTAAATTATTATTGATATATATTTTTTTAAAATAGTATGTTTATATTTTTCTTCTCAATTTTGGACATTACTTCACCCATATCAAAAAATGATCTTAAAAAAATCCGTTTAAGGTTTGTTGAAACTTTTATTCACATTTATGAGAGAATAAGAACAAAATATACTAAGAAATCGTCAAACGCAATAGGTATGTATGTATATGTATCTATATATATATTCAATAAAAAGTAGTCAATATAGCATTGAGATGTTGCACATTATGTGTTTTTAGAATTCAACCAATAGTTGCCCGTGCGTCTCAACACTACAACTTTTGTAGCAAAGAGTCTACCATCTTCGCAATGCTTTTCACACTGTGTTGATGTTGTTCTCTCAGGTCCATTGGCTAATCTAGCTCCACAAGTTAAACAATCTCCGACATGGACACAAGACAACGATCTTGTCTTCCACTGCAACAAGGTCCAAGGTTATGCTCGTGTTTCAACAATTATCTTTGATATTTTTGATAGACTCAAAGATTGTCTCTTACCAATTCATTGA

mRNA sequence

ATGGGAATGAGAATGGAAGAGCGGTTTAGGTATGAATGTTTGGAGGGTGAAAGATCAATGGAAATTGAAAGAGAAGTGGTATGTGTTCCACATGAAGAGATGATGAACCACCCTCCATTAATGAACAATAAAAGCAGTTTTGGTCAGTATTTGGGCACAAATGAGCAGAATTTGAATGTGGAGGAGATGTTTGGAGACATGGGAAGCCATGGACACTTACAAGACAGCTTGAAGATGGGTCCATTGGCTAATCTAGCTCCACAAGTTAAACAATCTCCGACATGGACACAAGACAACGATCTTGTCTTCCACTGCAACAAGGTCCAAGGTTATGCTCGTGTTTCAACAATTATCTTTGATATTTTTGATAGACTCAAAGATTGTCTCTTACCAATTCATTGA

Coding sequence (CDS)

ATGGGAATGAGAATGGAAGAGCGGTTTAGGTATGAATGTTTGGAGGGTGAAAGATCAATGGAAATTGAAAGAGAAGTGGTATGTGTTCCACATGAAGAGATGATGAACCACCCTCCATTAATGAACAATAAAAGCAGTTTTGGTCAGTATTTGGGCACAAATGAGCAGAATTTGAATGTGGAGGAGATGTTTGGAGACATGGGAAGCCATGGACACTTACAAGACAGCTTGAAGATGGGTCCATTGGCTAATCTAGCTCCACAAGTTAAACAATCTCCGACATGGACACAAGACAACGATCTTGTCTTCCACTGCAACAAGGTCCAAGGTTATGCTCGTGTTTCAACAATTATCTTTGATATTTTTGATAGACTCAAAGATTGTCTCTTACCAATTCATTGA

Protein sequence

MGMRMEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNVEEMFGDMGSHGHLQDSLKMGPLANLAPQVKQSPTWTQDNDLVFHCNKVQGYARVSTIIFDIFDRLKDCLLPIH
Homology
[Close]
BLAST of Cp4.1LG03g04550 vs. TrEMBL
Match: A0A0A0L9U4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G696880 PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-29
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 1 

Query: 1   MGMR-MEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLN 60
           MGMR MEERFRY  LE +RSME+EREV+CVPHEEM NHPPLMNN+SSF QYLGTNEQNLN
Sbjct: 77  MGMRSMEERFRYGSLEAQRSMELEREVLCVPHEEM-NHPPLMNNRSSFDQYLGTNEQNLN 136

Query: 61  VEEMFGDMGSHGHLQDSLKMG 81
           VEEMFGDMGSHG LQ+SLKMG
Sbjct: 137 VEEMFGDMGSHGQLQESLKMG 156

[Close]
BLAST of Cp4.1LG03g04550 vs. NCBI nr
Match: gi|659123701|ref|XP_008461794.1| (PREDICTED: transcription factor MYB46-like [Cucumis melo])

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-30
Identity = 69/80 (86.25%), Postives = 74/80 (92.50%), Query Frame = 1 

Query: 1   MGMRMEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLNV 60
           MGMRMEERFRY  LE +RSME+EREV+CVPHEEM NHPPLMNN+SSF QYLGTNEQNLNV
Sbjct: 218 MGMRMEERFRYGSLEAQRSMELEREVLCVPHEEM-NHPPLMNNRSSFDQYLGTNEQNLNV 277

Query: 61  EEMFGDMGSHGHLQDSLKMG 81
           EEMFGDMGSHG LQ+SLKMG
Sbjct: 278 EEMFGDMGSHGQLQESLKMG 296

[Close]
BLAST of Cp4.1LG03g04550 vs. NCBI nr
Match: gi|449463789|ref|XP_004149614.1| (PREDICTED: transcription factor MYB46-like [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 3.8e-29
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 1 

Query: 1   MGMR-MEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLN 60
           MGMR MEERFRY  LE +RSME+EREV+CVPHEEM NHPPLMNN+SSF QYLGTNEQNLN
Sbjct: 218 MGMRSMEERFRYGSLEAQRSMELEREVLCVPHEEM-NHPPLMNNRSSFDQYLGTNEQNLN 277

Query: 61  VEEMFGDMGSHGHLQDSLKMG 81
           VEEMFGDMGSHG LQ+SLKMG
Sbjct: 278 VEEMFGDMGSHGQLQESLKMG 297

[Close]
BLAST of Cp4.1LG03g04550 vs. NCBI nr
Match: gi|700203460|gb|KGN58593.1| (hypothetical protein Csa_3G696880 [Cucumis sativus])

HSP 1 Score: 136.3 bits (342), Expect = 3.8e-29
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = 1 

Query: 1   MGMR-MEERFRYECLEGERSMEIEREVVCVPHEEMMNHPPLMNNKSSFGQYLGTNEQNLN 60
           MGMR MEERFRY  LE +RSME+EREV+CVPHEEM NHPPLMNN+SSF QYLGTNEQNLN
Sbjct: 77  MGMRSMEERFRYGSLEAQRSMELEREVLCVPHEEM-NHPPLMNNRSSFDQYLGTNEQNLN 136

Query: 61  VEEMFGDMGSHGHLQDSLKMG 81
           VEEMFGDMGSHG LQ+SLKMG
Sbjct: 137 VEEMFGDMGSHGQLQESLKMG 156

The following BLAST results are available for this feature:
BLAST of Cp4.1LG03g04550 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g04550 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L9U4_CUCSA2.6e-2985.19Uncharacterized protein OS=Cucumis sativus GN=Csa_3G696880 PE=4 SV=1[more]
BLAST of Cp4.1LG03g04550 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG03g04550 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659123701|ref|XP_008461794.1|1.5e-3086.25PREDICTED: transcription factor MYB46-like [Cucumis melo][more]
gi|449463789|ref|XP_004149614.1|3.8e-2985.19PREDICTED: transcription factor MYB46-like [Cucumis sativus][more]
gi|700203460|gb|KGN58593.1|3.8e-2985.19hypothetical protein Csa_3G696880 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003677 DNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG03g04550.1Cp4.1LG03g04550.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG03g04550Csa3G696880Cucumber (Chinese Long) v2cpecuB599
Cp4.1LG03g04550MELO3C023974Melon (DHL92) v3.5.1cpemeB566
Cp4.1LG03g04550ClCG10G012400Watermelon (Charleston Gray)cpewcgB544
Cp4.1LG03g04550MELO3C023974.2Melon (DHL92) v3.6.1cpemedB673
Cp4.1LG03g04550CsaV3_3G032170Cucumber (Chinese Long) v3cpecucB0748
Cp4.1LG03g04550Bhi11G001183Wax gourdcpewgoB0742
Cp4.1LG03g04550CsGy3G027540Cucumber (Gy14) v2cgybcpeB396
Cp4.1LG03g04550Carg07322Silver-seed gourdcarcpeB1073
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG03g04550Cp4.1LG02g15680Cucurbita pepo (Zucchini)cpecpeB449
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG03g04550Melon (DHL92) v3.6.1cpemedB665
Cp4.1LG03g04550Silver-seed gourdcarcpeB0634
Cp4.1LG03g04550Silver-seed gourdcarcpeB1147
Cp4.1LG03g04550Cucumber (Chinese Long) v3cpecucB0789
Cp4.1LG03g04550Wax gourdcpewgoB0822
Cp4.1LG03g04550Cucurbita pepo (Zucchini)cpecpeB185
Cp4.1LG03g04550Cucurbita pepo (Zucchini)cpecpeB336
Cp4.1LG03g04550Cucumber (Gy14) v1cgycpeB0337
Cp4.1LG03g04550Cucumber (Gy14) v1cgycpeB0550
Cp4.1LG03g04550Cucurbita maxima (Rimu)cmacpeB283
Cp4.1LG03g04550Cucurbita maxima (Rimu)cmacpeB404
Cp4.1LG03g04550Cucurbita maxima (Rimu)cmacpeB494
Cp4.1LG03g04550Cucurbita maxima (Rimu)cmacpeB927
Cp4.1LG03g04550Cucurbita moschata (Rifu)cmocpeB245
Cp4.1LG03g04550Cucurbita moschata (Rifu)cmocpeB367
Cp4.1LG03g04550Cucurbita moschata (Rifu)cmocpeB453
Cp4.1LG03g04550Cucurbita moschata (Rifu)cmocpeB861
Cp4.1LG03g04550Wild cucumber (PI 183967)cpecpiB601
Cp4.1LG03g04550Wild cucumber (PI 183967)cpecpiB637
Cp4.1LG03g04550Cucumber (Chinese Long) v2cpecuB633
Cp4.1LG03g04550Bottle gourd (USVL1VR-Ls)cpelsiB494
Cp4.1LG03g04550Bottle gourd (USVL1VR-Ls)cpelsiB500
Cp4.1LG03g04550Watermelon (Charleston Gray)cpewcgB543
Cp4.1LG03g04550Watermelon (97103) v1cpewmB594
Cp4.1LG03g04550Watermelon (97103) v1cpewmB595
Cp4.1LG03g04550Melon (DHL92) v3.5.1cpemeB559
Cp4.1LG03g04550Cucumber (Gy14) v2cgybcpeB957