Lsi01G018580 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G018580
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_27
Location	chr01 : 20296892 .. 20305263 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCTTGTATCATGGATTGTCTCACCTATCTCTTTCTCTCTCTNTATTGTAAAAAAAAAAAAGATAGATACATGCAAATTTATTATTGTGATGATCATTTGCAACTTGATGTTGGATGATTATTTGAGTAATTACTCTTTCATAAGTGAATCAATTTAGATATTTGTTTGTGTAATTATAACTATTTCCAGTTGATTTTATATAAAATAGACTTAAAATTATCTAATAAAATTATTCTTCTACCAAAATTCTAAAACTCTACTAAAGTAGATAAAAAAAGTTATGACATAATTCTTCTTAAATAAGTTTTAAAAAAAACAAAAGAAAATGACAAGAAAATGAAAGATAACTACTATATCTATTTGACTACAACATTTCTCTCATTTAAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATGTGTGTGTTTATATTATCGAAATAGATATTTGACTTGAATTTGTGGTGAAGTTTATACTTTTTATTAATTAAATTGCTTAAATTTCGATGAGATTATTTTTGTATCTTCGTATGCTTTTGTAGTATGTTGGCAATTTTTCAAAATTGGTTTTTTATTTATTTATTTATTTTTTACTATTGTTGGATTCTTTTTTAGCTAGCTCTAGCTTTAATAATTTTTATGTGAATATTAATTTACTATAAGTTCAAGTTTGAGATGTTTGGTGAAGTTAATACTTTAAAATTTTAAATTTAACTTTTAGAAGAAGAAAAAAAAAATTCTTTAAAAGGTAATAATAAAGGATTTTGAGTAAAATTCTGGTTTCCATCTGAATGCAGAGGCCAGCATATTTCTCAGCTTCATGGGCCTAAATTCAGAGAAAGAAAGCCCAAAACTTAGCCCAAAAATTGCTGAAACATTTAGCCGAATAGGCTATTTCTATAATTTCATAAATGTGGGCAATTGTTTTAAATATCTTTTAAATATAACAAAATATCACTGTATAAAATTAATTGAGTTCATAACTTGACATACTGTGTTTTTAAATATATTTATCTTTATTTAATATAATACTACATTTTAAAATTTAAAATTTAAAATTTGAATACAATGAAAATATAAAATTAATGTTGTTTTCAGAATTTGTACTTTTTGGATCACAAAATTAAAAAAAAAAATTCAGAAATAGAATCTAAATTATCTGCCAAACACATATTTATTGAATATGAAAATATAAAATAGAATTTGAATTGCAAACCAAACAAGTCCAAGCTCTAACTTTTGTGAAAAAGAACTGGCCCATATATTTGTGTCAAAAGAAATTGGGAAGTTTGGACATTTTTTGGGAAATCGGGCCAAGATTAACACTATGATTTTGGGCTAAGCCCATCAGAATAAAGTAAAGCCTTGCAGTGCCATGAGATATCAATATACTGGTTGGCTATGTCTAGTAGACTGCGTTGGACTCTAAGCTAATCATAGTGTATTTGGAATAAATATGAGAAAATATTATTATTTGTGTGCTAATAAGTTTCTAATATAATCCTAAAATCCCTTTAATAACATTTGATTTTTAGTTTTTAAGAAACAAAAACATGTTATTTTGATTTTGTAACTTTAAAAAAAAAATAATAAAAAAAACATGTTTTTATTACAAATATATTAAACTATGTGTAAATTAGATGCCCATGATTAGTGTCCATTGCCATGTGTCATCCATATAGTTACCCATGTATTATCCATGTGTATCAAGATAACACACCATTAGTGCATGTAGTCCACCTCCTACTTGACAAATTGCCTATAAATAATGGCATTTGGTGGGTTTTAAGAGAATACACACATTGGTTAGAAATGCAAGAAGTTTGGAAATAGTGGAGAATTTTGGAGAAGTTCTTTTATATTTTTATTATTTTATATATATTATTATAATTATATTATATTATTATATTATATTTCTCCAATATTTGTATTATTGTGGTGCCCGTTTTTCTCCTCGTTTTTACAATACGTTATCAGCACGAGCTCTTGTCGTTTTCTCCGCTGAAGGTAAGTCCTAGAGGTAGGTCGTTTTTATGTTTATTATAATTAAATGTTATTTTATATGTCTAGTATATATTAAATTTCTAATATAAATATAATATTTTTGTGATAGTGTTACCATGACAAATCTTACAAAATTAGAATTCGCAACCTTTGACATTAATGGCAATAATTATTTGTCATGGGTACTCGATGCTGAAATTCACCTGGATGCTATGAACCTGGGAGAAACAATTAAAGAAGGAAATACGACATCCAGTCAGGAGAAGGCAAAAGCCATAATTTTCCTTCGGCATCATCTCCACGAAGGATTAAAAATGGAATATTTAACAATAAAAGATCCTCGTATCTTGTGGAAGAATTTGAAAGAGAGATATGATCACCAGAAAACGGTTATTCTGCCTAAAGCTCGTTATGAATGGATGCATTTGAGGCTCCAAGATTTCAAATCAGTAAGTGATTACAACTCCGCATTATTTAAGATCAGTTCAAAATTGTTGTTATGCGGAGAGAAAATTACTGATGCAGATATGTTAGAGAAGACATTTTCAACTTTTCATGTCTCGAATATGCTCCTGCAGCAGCAATATCGAGAGAAAGGTTTTAAAAAATATTCTGAATTAATTTCATGTCTTCTCGTGGCTGAACAAAATAACGAGTTATTGATGAAGAACCACGAATCTCGACCAACCGGAGCAACACCATTCCCTGAAGAGAATGCTGTGAATTTTAATCGTGGTCGAGGTCGAGGTCGTGGTCGAGGTCATGACCGTGGTAGAGGAAGAAATAATTATTATTTTCGTGGTGGTCGTTCTAGTCATCCAAATTTCAAAAGAACCACACGAAATGATGATCATAAAGGAAAAGCTCCACAAGATAAGAATTCAAGAGGTGATGAACATAAATGCTTCCGATGCAGAATGACTGGGCATTGGTCACGTGTTTGTCGTACATCGAAACACCTGGTCGATCTTTATCAAGCATCTTTGAAGGAAAAAGGGAAGAATGTGGAAGCAAATTTTGCATACCAGGATAATGATATATTTGACCCATCCCATATGACAAATTTGGATGTGGCAGACTTCCTTGAATCTCCTGAAGAGAAGATTGGCACAATTGATGAAACGTCAAGTGTTTCTTTTGATTTTGAAAATATTTAGAATTAATGTTGTTTGTTTTTCTATCTTTTATGTTTCCTTTAGCTAAGGTTAAATTTCATATTTCAAGCTTTCCCTCTTATTGTAATTATTTTTTTGTTTAAATGAAGAATCATGGACAGTTTTCATATGTTGAGTGACTCAAAAATGAAGAATGAAGATATATGTCTGGCAGACTGTGCAACTACACATCCAATACTTAAGAGTATAAAATATTTTTCCAAACTAACAATGCTGGAAGCAAAAGTCAATACAATATCAGATTCTGCAAATCTAATTGAAGGATTTGGAAAAGCAAATATTATTTTACCTAGAGGAACAAAATTTACAATTGACAATGCATTGTTCTCTAGTCAATCAAAAAGAAATCTACTGAGTTTTAAAGATATACGTTGCAATGGTTATCATATTGAGACGGATAGAAAGAATGAGATAGAATATCTTTACATTATATCTACTGTCTCATATGAAAAACGTATACTGGAAAAGTTGCATGCTTTATCTTCTGGATTATATTATACTCATATACGAGTAATCAAAACATATGCAACAGATTAGGTCATCCATGATCTATAATGATGAGAAGAATTATTGAGAATTCACATGGACATCCATTGAAGAGCCAGAAGATTCTTCAATCTAATGAATTGTCATGTGATGCTTGCTCTCGAGGCAAATTAATAATTAGACCATCACCAGCTAAAGTGGGGACTGAATCACCTACATTTTTGGAACGAATTCATGGTGATATATGTGGACCTATTAACCCACCTAGTGGACCATTTAAATATTTTATGGTATTAATAGACGCATCCAGTAGATGGTCACACATATGTTTATTATCAAGTCGAAACCTTGCATTTGCAAGATTACTTGCTCAGATAATTAAGTTAAGAGCACAATTTCCTGATTATTCAATTAAGACCATTCGTCTTGATAATGCTGGTGAATTTACATCCCAAGCTTTTGATAATTATTGTATGTCAATTGGGATAAATGTTGAACATCCTGTAGCTCATGTTCATACACAAAATGGTTTAGCAGAATCATTTATAAAACGTTTGCAATTAATTGCTAGACCATTGCTTATGAGAGCTAAACTACCTACATCTGTATGGGGTCATGCTATTTTGCATGCAGCGTCACTTGTATGCATTAGACTAGTAGCTTATCATAAGTACTCGCCATTACAATTAGCTTATGGTCAAGAGCCAAATATTTCCCATCTAAGAATTTTTGGATGTGCAGTATATGTTCCAATTGCTCCACCACAACGTACTAAGATGGGTCCTCAAGGGAGGTTAGGAATATATGTTGGATATGATTCCCCATCAATTATTAAATATCTTGAACCCCTGACGGGTGATGTATTTACTGCAAGATTTGTTGATTGTCATTTTAATGAGACAAATTTTCCAACATTAGGGGGAGGAATTAAGAAGTTGGAAAAAGAAATTACATGGGATGCATCTTTATTGTCTCATTTAGATCCTCGTACAGATCAGTGTGAACTTGAAATTCAGAAAATAATTCATTTGCAAAATATAGCAAATCAGTTACCAGATGCATTTATAGATGCAAAGAAAGTAACTAAATCACATATACCAGCGGTAAATATTCCATCAAAAATTGATATCCCAACGCAGCAAGTTGTCACTAATGAGTCTGGAACACGCCAGAAGCGTGGTAGACCAGCAGGTTCTAAAGATAAAAATCCCCGAAAAAGAAAAATAGTCAATAGCCAAAAAGACTTGGTTGAGAATGTAAACACTCATGAAGAAATCCTTAACATGACTAGTGAAGAAGGTGAAATACCTAAAGATAATAATGAGATTTCAATAAACTATGTCATGACAGGAAAAAAATGGAACCGAACTAATGTAGTTATTGACAACATTTTTGCATATAATGTTGCTCTTGATATTATATCTGAAAATGAAGATTCTGAACCAAAATCTGTTGAAGAATGTCGACATAGAAAAGATTGGCTTAAGTGGAAAGAAGCAATTGAAGCAGAATTAAACTCACTTTCAAAACGTCAGGTTTTTGGACCAGTAGTCCAAACAGCAGAAGATGTCAAACCTGTGGGATACAAATGGGTATTTGTGAGAAAAAGAAATGAAAAAAATGAGGTCGTAAGATATAAAGCAAGACTAGTTGCACAAGGATTTTCACAAAGACTTGGTATTGATTATGAGGAGACATATTCTCCAGTGGTGGATGCAATTACACTAAAATTTTTAATTGACTATATATGAAAATCTAGATATGCATCTTATGGATGTAGTCACGACATACTTATATGGATCTCTTGATAATGATATTTATATGAGAATCCTTAAATACTTGAAGCATATAAATCAAGTTCCCGAGAATTATATTCAATAAAGTTACAGAGATCATTATATGGATTAAAACCATCCGGGTGAATGTGGTATAATCGTCTGAGTGGATATTTGTTGAAAGAAGGATATCAAAATAATCCAATATGTCCGTGTGTTTTTATAAAGAAATCACAGTCAGGATTTGCTATTATAACTGTATATGTTGACGACTTAAATATTATTGGAACTCCGGAAGAGCTTTCAAAGGCAATAGAATATCTTAAGAAAGAATTTGAGATAAAAGATCTTGGAAAAACAAAATTTTGCCTTGGCTTGCAAATTGAGCATTTAGCAGATGAGATATTTGTTCATCAGTCAACTTATACAGGGAAAATTTTGAAAAGATTCTATATGGATAAAGCACATCCATTAAACATTCCAATGGAAGTTCGTTCACTAGATGTAAAGAAAGACATATTTCGACCTCGAGATAATAATGAAGAACTTCTTGGTCCTGAAGTACCATATCTTAGTGCAATTGGTGCACTTATGTATCTTGCTAATAATACAAGACCAGATATTGCATTTTCGGTAAATTTATTAGCTAGGTATAGTTCTTCTCCAACAAAAAGACATTGGAATGGAATTAAACATATACTTCGTTATCTCCGAGGAACGATTGACATGGGTTTGTTTTATTCAAATAAATCGAATTTTGATTTAGTTGGTTATGCAGATTCTGGATATTTATCTGATCCACACAAAGCGAGATCTCAAACAGGTTATCTATTCACATGTGGAGGAACTGCTATATCATGGCGATCGGTGAAACAAACTATAACGGCTACTTCCTCAAATCATGCCGAAATTCTTGCAATTCACGAGGCTAGCAGAGAATGTGTATGGCTAAGATCAATGTCTCAACACATTCGTGAAACATGTGCCTTGTCTTCTAGTAAAAGTCTTCCGACAATATTATACGAAGACAACACAGCATGCATAGCTCAAATCAAAGGAGGATATATTAAAGGAGATAGAACAAAGCATATTTCACCCAAGCTTTTCTATACTCATGATCTTGAAGAAAATGACGACATCAATGTACAACAAATTTGTTCGAAGAATAACTTGGCGGACTTATTTACAAAATCATTACCAACCACAATTTTTGAAAAATTGATACACGACATTGGAATGCGGCGACTCAAAGATCTTAAGTAAGGTTTCAATGAGGGGGAGCAAAATGTTGTATTTTATAAAAAGTATAAATTATATGAAATATGTACTCTTTTTCCTTCACTAGGATTTTTTCTCATTGGGTTTTTCCCTAGTAAGGTTTTAACGAGGCATAATTCATATATTTTGGGCATCTAAGGGGGAGTATTACAAATATATTAAATTATGTGTAAATTAGATGCCCATGATTAGTGTCCATTGCCATGTGTCATCCATATAGTTACCCATGTATTATCCATGTGTATCAAGATAACACACCATTAGTGCATGTAGTCCACCTCCTACTTGACAAATTGCCTATAAATAGTGACATTTGGTGGGTTTTAAGAGAATACACACATTGGTTAGAAATGCAAGAAGTTTGGAAATAGTGGAGAATTTTGGAGAAGTTCTTTTATTTAAGTTCTTTTATATTTTTATTATTTTATATATATATATTATTATTATATTATATTATTATATTATATTTTTCCAATATTTGTATTGTTGTGGTGCCCGTTTTTCTCCTCGTTTTTACAACAGTTTTGTTATTATTTTTGGTTTTCTACTTTTAAAAATTGAAAACAAAAAATATGTTTGATAATTGTATTTTTACCTTTTTGTTTTTATACATACCTACATACATACATACATATATATATATATATATAAAACTTTTTATAATTTTATCTATTTCTAGAGACTCTTTATATATATGACAAAATGAGGCTAAAATATTGCAAAAATATTAAAACTTAAAATTAATTGCAAATATAGTAAAATTTATCTTCAATCCATATAAAATGTCTAAAAAGTCCACTGAAAGTACAAAAAAATGTTGGAGGTACAAAATTTCTAATTTTTGAAGTTTATTAGTGATAAAAGTCTATCGGTGATTGGTGATATTAATGATAGAAGTCTATCATTCATAGACTCCTTATATAGATATCATTGATATTACCAATCTACTTAAGTTTTATCACAACAATGAGGTGATACTTATATCTTCACTTTTAAGGCTAATAGTGAAATTTTGAAAATTGCCTCTACCAGATGTATTTTCTAATCAAATTGTCTCCTAAATCTTTTGTTTGTTCAAGTTAGTTAATATAAGGAATTGATTGTGTTTGCACATTTTGTTCAATGGAAACTTTAAATTTGGTCCTTATGAGATAAAGAGCTTTTCCAATGGAATTCTCCTTCCTCCAATGCAAGCTGATCACATTTCCCCACTCCCAGGTTGGATCATTGAGTCTCTAAAGCCTGTAAAGTACATTGACAGAGGCCATTTCTTTGTCCCTTCAGGGAATGCAGCCATTGAATTGGTTGCAGGAAGAGAAAGTGTCATTTCCCAAATAATCCAAACAGTTCCCAAAAAGTTTTATAATCTAACCTTCACCATTGGAGATGCTAGAAATGGATGCCATGGCTCCATGGATGTCCAAGCTTTTGCTGCCCAACAAACCATCAAAGTTCCTTTCATTTCTAGAGGCCTTGGAAGGTCCAAAACTGCAAGTTTGAAGTTCCAAGCAGCTTCAGTTAGCACAAGGATTACATTTTACAGTGCTTATTATCACACCAAGCTTCATGACTTTGACCATTTGTGTGGCCTTGTCTTGGACAATGTTATAGTTGTTCCAGCCTAG

mRNA sequence

ATGACCCTTAGCTTTTCCAATGGAATTCTCCTTCCTCCAATGCAAGCTGATCACATTTCCCCACTCCCAGGTTGGATCATTGAGTCTCTAAAGCCTGTAAAGTACATTGACAGAGGCCATTTCTTTGTCCCTTCAGGGAATGCAGCCATTGAATTGGTTGCAGGAAGAGAAAGTGTCATTTCCCAAATAATCCAAACAGTTCCCAAAAAGTTTTATAATCTAACCTTCACCATTGGAGATGCTAGAAATGGATGCCATGGCTCCATGGATGTCCAAGCTTTTGCTGCCCAACAAACCATCAAAGTTCCTTTCATTTCTAGAGGCCTTGGAAGGTCCAAAACTGCAAGTTTGAAGTTCCAAGCAGCTTCAGTTAGCACAAGGATTACATTTTACAGTGCTTATTATCACACCAAGCTTCATGACTTTGACCATTTGTGTGGCCTTGTCTTGGACAATGTTATAGTTGTTCCAGCCTAG

Coding sequence (CDS)

ATGACCCTTAGCTTTTCCAATGGAATTCTCCTTCCTCCAATGCAAGCTGATCACATTTCCCCACTCCCAGGTTGGATCATTGAGTCTCTAAAGCCTGTAAAGTACATTGACAGAGGCCATTTCTTTGTCCCTTCAGGGAATGCAGCCATTGAATTGGTTGCAGGAAGAGAAAGTGTCATTTCCCAAATAATCCAAACAGTTCCCAAAAAGTTTTATAATCTAACCTTCACCATTGGAGATGCTAGAAATGGATGCCATGGCTCCATGGATGTCCAAGCTTTTGCTGCCCAACAAACCATCAAAGTTCCTTTCATTTCTAGAGGCCTTGGAAGGTCCAAAACTGCAAGTTTGAAGTTCCAAGCAGCTTCAGTTAGCACAAGGATTACATTTTACAGTGCTTATTATCACACCAAGCTTCATGACTTTGACCATTTGTGTGGCCTTGTCTTGGACAATGTTATAGTTGTTCCAGCCTAG

Protein sequence

MTLSFSNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVISQIIQTVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQAASVSTRITFYSAYYHTKLHDFDHLCGLVLDNVIVVPA

Homology

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BLAST of Lsi01G018580 vs. TrEMBL
Match: A0A0A0KW43_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G165900 PE=4 SV=1)

HSP 1 Score: 294.3 bits (752), Expect = 9.0e-77
Identity = 143/155 (92.26%), Postives = 146/155 (94.19%), Query Frame = 1


Query: 4   SFSNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVISQI 63
           SF+NGILLPP+Q DHISPLPGWIIESLKPVKYIDR HFFVPSGNAAIELVAGRES ISQI
Sbjct: 225 SFNNGILLPPLQTDHISPLPGWIIESLKPVKYIDRPHFFVPSGNAAIELVAGRESAISQI 284

Query: 64  IQTVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQAAS 123
           I T+P KFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLG SKTASLKFQA S
Sbjct: 285 IPTLPNKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGSSKTASLKFQAVS 344

Query: 124 VSTRITFYSAYYHTKLHDFDHLCGLVLDNVIVVPA 159
           VSTRITFYSAYYHTKLHDF HLCG VLDNVIVVPA
Sbjct: 345 VSTRITFYSAYYHTKLHDFGHLCGPVLDNVIVVPA 379

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BLAST of Lsi01G018580 vs. TrEMBL
Match: M5VPI5_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024647mg PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 8.2e-62
Identity = 116/154 (75.32%), Postives = 131/154 (85.06%), Query Frame = 1


Query: 4   SFSNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVISQI 63
           +FS GILLPP   D ISPLPGWIIESLKPVKYID+ HF VP G AAIELVAGRES I+QI
Sbjct: 227 NFSTGILLPPKAKDQISPLPGWIIESLKPVKYIDKKHFQVPGGLAAIELVAGRESAIAQI 286

Query: 64  IQTVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQAAS 123
           I+T+P KFYNLTFTIGDA+N CHGSM V+AFA ++T+KVP++S+G G  KTAS KFQA S
Sbjct: 287 IRTIPNKFYNLTFTIGDAKNACHGSMMVEAFAGKETLKVPYMSQGKGGFKTASFKFQATS 346

Query: 124 VSTRITFYSAYYHTKLHDFDHLCGLVLDNVIVVP 158
             TRITFYSAYYHTKLHDF H+CG VLDNVIV+P
Sbjct: 347 PRTRITFYSAYYHTKLHDFGHMCGPVLDNVIVLP 380

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BLAST of Lsi01G018580 vs. TrEMBL
Match: A0A059DIU5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02362 PE=4 SV=1)

HSP 1 Score: 241.5 bits (615), Expect = 6.9e-61
Identity = 113/154 (73.38%), Postives = 132/154 (85.71%), Query Frame = 1


Query: 4   SFSNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVISQI 63
           +FS G+LLP  Q D ISPLPGWIIES+KPVKY+DR HFFVPSG AA+ELVAGRES ++QI
Sbjct: 215 NFSTGVLLPAKQKDLISPLPGWIIESMKPVKYVDRKHFFVPSGLAAVELVAGRESAMAQI 274

Query: 64  IQTVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQAAS 123
           I+TVP KFYNLTFT+GDA+NGCHGSM V+AFAA+ T+KVP+ S   G SKTA+LKFQA S
Sbjct: 275 IRTVPNKFYNLTFTVGDAKNGCHGSMMVEAFAAKDTLKVPYESTSKGGSKTANLKFQATS 334

Query: 124 VSTRITFYSAYYHTKLHDFDHLCGLVLDNVIVVP 158
             TRITF+SAYYHTKLHD+ H+CG VLD+V VVP
Sbjct: 335 TRTRITFFSAYYHTKLHDYGHMCGPVLDDVKVVP 368

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BLAST of Lsi01G018580 vs. TrEMBL
Match: B9H9U0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04880g PE=4 SV=2)

HSP 1 Score: 240.7 bits (613), Expect = 1.2e-60
Identity = 111/154 (72.08%), Postives = 133/154 (86.36%), Query Frame = 1


Query: 4   SFSNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVISQI 63
           +FS GILLPP + D ISPLPGWIIESLKPVKYID  HFFVP+G AAIE+VAGRES I+Q+
Sbjct: 214 NFSTGILLPPKKQDQISPLPGWIIESLKPVKYIDNKHFFVPTGFAAIEMVAGRESAIAQV 273

Query: 64  IQTVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQAAS 123
           I+T+P KFYNLTFTIGDA+N CHGSM V+AFAA++T+KVP++S+G G  KTA+L+F+A S
Sbjct: 274 IRTIPDKFYNLTFTIGDAKNACHGSMMVEAFAARETLKVPYVSQGKGGYKTATLRFRAIS 333

Query: 124 VSTRITFYSAYYHTKLHDFDHLCGLVLDNVIVVP 158
             TRITFYSAYYHTKLHD+ H+CG VLD+V V P
Sbjct: 334 ARTRITFYSAYYHTKLHDYGHMCGPVLDDVRVFP 367

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BLAST of Lsi01G018580 vs. TrEMBL
Match: B9T1F2_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0373210 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 2.0e-60
Identity = 115/154 (74.68%), Postives = 131/154 (85.06%), Query Frame = 1


Query: 4   SFSNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVISQI 63
           +FS G+LLPP Q D +SPLPGWIIESLKPVKYID  HFFVPSG AAIELVAGRES I+Q 
Sbjct: 217 NFSTGVLLPPKQLDLVSPLPGWIIESLKPVKYIDSKHFFVPSGFAAIELVAGRESAIAQD 276

Query: 64  IQTVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQAAS 123
           I+T+P K YNL FTIGDA+NGCHGSM V+AFAA++T+KVPF S+G G SKTAS KFQA +
Sbjct: 277 IRTIPGKSYNLRFTIGDAKNGCHGSMMVEAFAAKETLKVPFESQGKGGSKTASFKFQAIA 336

Query: 124 VSTRITFYSAYYHTKLHDFDHLCGLVLDNVIVVP 158
             TRITFYSAYYHTKL+DF H+CG VLD+VIV P
Sbjct: 337 AKTRITFYSAYYHTKLNDFGHMCGPVLDDVIVFP 370

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BLAST of Lsi01G018580 vs. TAIR10
Match: AT2G41800.1 (AT2G41800.1 Protein of unknown function, DUF642)

HSP 1 Score: 205.7 bits (522), Expect = 2.1e-53
Identity = 98/155 (63.23%), Postives = 118/155 (76.13%), Query Frame = 1


Query: 4   SFSNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVISQI 63
           +FS GIL+P    D ISPLPGWI+ESLKPVKYIDR HF VP G  A+ELVAGRES I+QI
Sbjct: 215 NFSTGILIPARIQDFISPLPGWIVESLKPVKYIDRRHFKVPYGQGAVELVAGRESAIAQI 274

Query: 64  IQTVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQAAS 123
           I+T+  K Y L+F +GDA+NGCHGSM V+AFA ++  K+ F+S G G  KT   +F A S
Sbjct: 275 IRTIAGKAYMLSFAVGDAQNGCHGSMMVEAFAGREPFKLSFMSEGKGAFKTGHFRFVADS 334

Query: 124 VSTRITFYSAYYHTKLHDFDHLCGLVLDNVIVVPA 159
             TR+TFYSA+YHTKLHDF HLCG VLD+V+V  A
Sbjct: 335 DRTRLTFYSAFYHTKLHDFGHLCGPVLDSVVVTLA 369

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BLAST of Lsi01G018580 vs. TAIR10
Match: AT2G41810.1 (AT2G41810.1 Protein of unknown function, DUF642)

HSP 1 Score: 196.8 bits (499), Expect = 9.9e-51
Identity = 100/152 (65.79%), Postives = 110/152 (72.37%), Query Frame = 1


Query: 4   SFSNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVISQI 63
           +FS GIL+P    D ISPLPGWI+ESLKPVKYID  HF VPSG AAIELVAGRES I+QI
Sbjct: 215 NFSTGILIPAKIQDLISPLPGWIVESLKPVKYIDNRHFKVPSGLAAIELVAGRESAIAQI 274

Query: 64  IQTVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQAAS 123
           I+TV  K Y L+F +GDA NGCHGSM V+AFA     KV F S   G  K     F+A S
Sbjct: 275 IRTVSGKNYILSFVVGDAHNGCHGSMMVEAFAGISAFKVTFESNDKGAFKVGRFAFRADS 334

Query: 124 VSTRITFYSAYYHTKLHDFDHLCGLVLDNVIV 156
             TRITFYS +YHTKLHDF HLCG VLDNV V
Sbjct: 335 NRTRITFYSGFYHTKLHDFGHLCGPVLDNVSV 366

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BLAST of Lsi01G018580 vs. TAIR10
Match: AT3G08030.1 (AT3G08030.1 Protein of unknown function, DUF642)

HSP 1 Score: 186.8 bits (473), Expect = 1.0e-47
Identity = 90/150 (60.00%), Postives = 112/150 (74.67%), Query Frame = 1


Query: 6   SNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVISQIIQ 65
           + G+LLPP Q D  SPLPGWIIESLK VK+ID  +F VP G+AAIELVAG+ES I+Q+I+
Sbjct: 212 TQGVLLPPKQEDLTSPLPGWIIESLKAVKFIDSKYFNVPFGHAAIELVAGKESAIAQVIR 271

Query: 66  TVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQAASVS 125
           T P + Y L+F +GDA+N CHGSM V+AFAA+ T+KVP  S G G  KTAS KF+A    
Sbjct: 272 TSPGQTYTLSFVVGDAKNDCHGSMMVEAFAARDTLKVPHTSVGGGHVKTASFKFKAVEAR 331

Query: 126 TRITFYSAYYHTKLHDFDHLCGLVLDNVIV 156
           TRITF+S +YHTK  D   LCG V+D ++V
Sbjct: 332 TRITFFSGFYHTKKTDTVSLCGPVIDEIVV 361

[Close]

BLAST of Lsi01G018580 vs. TAIR10
Match: AT4G32460.1 (AT4G32460.1 Protein of unknown function, DUF642)

HSP 1 Score: 177.6 bits (449), Expect = 6.2e-45
Identity = 82/155 (52.90%), Postives = 112/155 (72.26%), Query Frame = 1


Query: 4   SFSNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVISQI 63
           + S+G+L+PP   D  SPLPGW++ESLK VKYID  HF VP G  A+ELVAG+ES ++Q+
Sbjct: 208 NISSGVLIPPNSIDDHSPLPGWMVESLKAVKYIDSDHFSVPQGRRAVELVAGKESAVAQV 267

Query: 64  IQTVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQAAS 123
           ++T+P K Y L+F++GDA N C GSM V+AFA + TIKVP+ S+G G  K +SL+F A S
Sbjct: 268 VRTIPGKTYVLSFSVGDASNACAGSMIVEAFAGKDTIKVPYESKGKGGFKRSSLRFVAVS 327

Query: 124 VSTRITFYSAYYHTKLHDFDHLCGLVLDNVIVVPA 159
             TR+ FYS +Y  +  DF  LCG V+D+V ++ A
Sbjct: 328 SRTRVMFYSTFYAMRNDDFSSLCGPVIDDVKLLSA 362

[Close]

BLAST of Lsi01G018580 vs. TAIR10
Match: AT5G25460.1 (AT5G25460.1 Protein of unknown function, DUF642)

HSP 1 Score: 170.6 bits (431), Expect = 7.6e-43
Identity = 80/151 (52.98%), Postives = 107/151 (70.86%), Query Frame = 1


Query: 6   SNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVISQIIQ 65
           + G+L+PP   D  SPLPGW++ESLK VKY+D  HF VP G  AIELVAG+ES I+Q+++
Sbjct: 214 TTGVLIPPFIEDDHSPLPGWMVESLKAVKYVDVEHFSVPQGRRAIELVAGKESAIAQVVR 273

Query: 66  TVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQAASVS 125
           TV  K Y L+F +GDA N C GSM V+AFA + T+KVP+ S+G G  K AS++F A S  
Sbjct: 274 TVIGKTYVLSFAVGDANNACKGSMVVEAFAGKDTLKVPYESKGTGGFKRASIRFVAVSTR 333

Query: 126 TRITFYSAYYHTKLHDFDHLCGLVLDNVIVV 157
           +RI FYS +Y  +  DF  LCG V+D+V ++
Sbjct: 334 SRIMFYSTFYAMRSDDFSSLCGPVIDDVKLI 364

[Close]

BLAST of Lsi01G018580 vs. NCBI nr
Match: gi|449463352|ref|XP_004149398.1| (PREDICTED: uncharacterized protein LOC101213859 [Cucumis sativus])

HSP 1 Score: 294.3 bits (752), Expect = 1.3e-76
Identity = 143/155 (92.26%), Postives = 146/155 (94.19%), Query Frame = 1


Query: 4   SFSNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVISQI 63
           SF+NGILLPP+Q DHISPLPGWIIESLKPVKYIDR HFFVPSGNAAIELVAGRES ISQI
Sbjct: 225 SFNNGILLPPLQTDHISPLPGWIIESLKPVKYIDRPHFFVPSGNAAIELVAGRESAISQI 284

Query: 64  IQTVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQAAS 123
           I T+P KFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLG SKTASLKFQA S
Sbjct: 285 IPTLPNKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGSSKTASLKFQAVS 344

Query: 124 VSTRITFYSAYYHTKLHDFDHLCGLVLDNVIVVPA 159
           VSTRITFYSAYYHTKLHDF HLCG VLDNVIVVPA
Sbjct: 345 VSTRITFYSAYYHTKLHDFGHLCGPVLDNVIVVPA 379

[Close]

BLAST of Lsi01G018580 vs. NCBI nr
Match: gi|659121675|ref|XP_008460770.1| (PREDICTED: uncharacterized protein LOC103499530 [Cucumis melo])

HSP 1 Score: 291.2 bits (744), Expect = 1.1e-75
Identity = 140/155 (90.32%), Postives = 146/155 (94.19%), Query Frame = 1


Query: 4   SFSNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVISQI 63
           SF+NGILLPP+Q DHISPLPGWIIESLKPVKY+DR HFFVPSGNAAIELVAGRES ISQI
Sbjct: 217 SFNNGILLPPLQTDHISPLPGWIIESLKPVKYVDRPHFFVPSGNAAIELVAGRESAISQI 276

Query: 64  IQTVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQAAS 123
           I+T+PKKFYNLTFTIGDARNGCHGSMDVQAFAAQ +IKVPFISRGLG SKTASLKFQA S
Sbjct: 277 IRTLPKKFYNLTFTIGDARNGCHGSMDVQAFAAQHSIKVPFISRGLGSSKTASLKFQAVS 336

Query: 124 VSTRITFYSAYYHTKLHDFDHLCGLVLDNVIVVPA 159
           V TRITFYSAYYHTKLHDF HLCG VLDNVIVVPA
Sbjct: 337 VRTRITFYSAYYHTKLHDFGHLCGPVLDNVIVVPA 371

[Close]

BLAST of Lsi01G018580 vs. NCBI nr
Match: gi|595803302|ref|XP_007201993.1| (hypothetical protein PRUPE_ppa024647mg [Prunus persica])

HSP 1 Score: 244.6 bits (623), Expect = 1.2e-61
Identity = 116/154 (75.32%), Postives = 131/154 (85.06%), Query Frame = 1


Query: 4   SFSNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVISQI 63
           +FS GILLPP   D ISPLPGWIIESLKPVKYID+ HF VP G AAIELVAGRES I+QI
Sbjct: 227 NFSTGILLPPKAKDQISPLPGWIIESLKPVKYIDKKHFQVPGGLAAIELVAGRESAIAQI 286

Query: 64  IQTVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQAAS 123
           I+T+P KFYNLTFTIGDA+N CHGSM V+AFA ++T+KVP++S+G G  KTAS KFQA S
Sbjct: 287 IRTIPNKFYNLTFTIGDAKNACHGSMMVEAFAGKETLKVPYMSQGKGGFKTASFKFQATS 346

Query: 124 VSTRITFYSAYYHTKLHDFDHLCGLVLDNVIVVP 158
             TRITFYSAYYHTKLHDF H+CG VLDNVIV+P
Sbjct: 347 PRTRITFYSAYYHTKLHDFGHMCGPVLDNVIVLP 380

[Close]

BLAST of Lsi01G018580 vs. NCBI nr
Match: gi|645280777|ref|XP_008245331.1| (PREDICTED: uncharacterized protein LOC103343457 [Prunus mume])

HSP 1 Score: 244.2 bits (622), Expect = 1.5e-61
Identity = 116/154 (75.32%), Postives = 130/154 (84.42%), Query Frame = 1


Query: 4   SFSNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVISQI 63
           +FS GILLPP   D ISPLPGWIIESLKPVKYID+ HF VP G AAIELVAGRES I+QI
Sbjct: 216 NFSTGILLPPKAKDQISPLPGWIIESLKPVKYIDKKHFSVPGGLAAIELVAGRESAIAQI 275

Query: 64  IQTVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQAAS 123
           I+T+P KFYNLTFTIGDA+N CHGSM V+AFA ++T+KVP+ S+G G  KTAS KFQA S
Sbjct: 276 IRTIPNKFYNLTFTIGDAKNACHGSMMVEAFAGKETLKVPYTSQGKGGFKTASFKFQATS 335

Query: 124 VSTRITFYSAYYHTKLHDFDHLCGLVLDNVIVVP 158
             TRITFYSAYYHTKLHDF H+CG VLDNVIV+P
Sbjct: 336 PRTRITFYSAYYHTKLHDFGHMCGPVLDNVIVLP 369

[Close]

BLAST of Lsi01G018580 vs. NCBI nr
Match: gi|743909165|ref|XP_011048055.1| (PREDICTED: uncharacterized protein LOC105142230 [Populus euphratica])

HSP 1 Score: 242.7 bits (618), Expect = 4.5e-61
Identity = 113/157 (71.97%), Postives = 132/157 (84.08%), Query Frame = 1


Query: 1   MTLSFSNGILLPPMQADHISPLPGWIIESLKPVKYIDRGHFFVPSGNAAIELVAGRESVI 60
           M  +FS G+LLPP Q D ISPLPGWIIESLKPVKYID  HFFVP G AAIELVAGRES +
Sbjct: 207 MFKNFSTGVLLPPKQQDQISPLPGWIIESLKPVKYIDSKHFFVPEGFAAIELVAGRESAV 266

Query: 61  SQIIQTVPKKFYNLTFTIGDARNGCHGSMDVQAFAAQQTIKVPFISRGLGRSKTASLKFQ 120
           +QII+T+P KFYNLTFT+GDA+N CHGSM V+AFAA++T+KVP++S+G G  KTA L+FQ
Sbjct: 267 AQIIRTIPDKFYNLTFTVGDAKNACHGSMMVEAFAAKETVKVPYVSQGKGGYKTAILRFQ 326

Query: 121 AASVSTRITFYSAYYHTKLHDFDHLCGLVLDNVIVVP 158
           A S  TRITFYSAYYHTKLHD+ H+CG VLD+V V P
Sbjct: 327 AISARTRITFYSAYYHTKLHDYGHMCGPVLDDVSVFP 363

The following BLAST results are available for this feature:

BLAST of Lsi01G018580 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi01G018580 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KW43_CUCSA	9.0e-77	92.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G165900 PE=4 SV=1	[more]
M5VPI5_PRUPE	8.2e-62	75.32	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa024647mg PE=4 SV=1	[more]
A0A059DIU5_EUCGR	6.9e-61	73.38	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02362 PE=4 SV=1	[more]
B9H9U0_POPTR	1.2e-60	72.08	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s04880g PE=4 SV=2	[more]
B9T1F2_RICCO	2.0e-60	74.68	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0373210 PE=4 SV=1	[more]

BLAST of Lsi01G018580 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G41800.1	2.1e-53	63.23	Protein of unknown function, DUF642	[more]
AT2G41810.1	9.9e-51	65.79	Protein of unknown function, DUF642	[more]
AT3G08030.1	1.0e-47	60.00	Protein of unknown function, DUF642	[more]
AT4G32460.1	6.2e-45	52.90	Protein of unknown function, DUF642	[more]
AT5G25460.1	7.6e-43	52.98	Protein of unknown function, DUF642	[more]

BLAST of Lsi01G018580 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449463352\|ref\|XP_004149398.1\|	1.3e-76	92.26	PREDICTED: uncharacterized protein LOC101213859 [Cucumis sativus]	[more]
gi\|659121675\|ref\|XP_008460770.1\|	1.1e-75	90.32	PREDICTED: uncharacterized protein LOC103499530 [Cucumis melo]	[more]
gi\|595803302\|ref\|XP_007201993.1\|	1.2e-61	75.32	hypothetical protein PRUPE_ppa024647mg [Prunus persica]	[more]
gi\|645280777\|ref\|XP_008245331.1\|	1.5e-61	75.32	PREDICTED: uncharacterized protein LOC103343457 [Prunus mume]	[more]
gi\|743909165\|ref\|XP_011048055.1\|	4.5e-61	71.97	PREDICTED: uncharacterized protein LOC105142230 [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006946	DUF642

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G018580.1	Lsi01G018580.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006946	Domain of unknown function DUF642	PFAM	PF04862	DUF642	coord: 19..155 score: 2.0
None	No IPR available	PANTHER	PTHR31265	FAMILY NOT NAMED	coord: 5..158 score: 1.5E
None	No IPR available	PANTHER	PTHR31265:SF5	SUBFAMILY NOT NAMED	coord: 5..158 score: 1.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G018580	CmaCh03G000660	Cucurbita maxima (Rimu)	cmalsiB603
Lsi01G018580	CmoCh03G000640	Cucurbita moschata (Rifu)	cmolsiB590
Lsi01G018580	Cla002767	Watermelon (97103) v1	lsiwmB150
Lsi01G018580	ClCG04G000080	Watermelon (Charleston Gray)	lsiwcgB135
Lsi01G018580	Cla97C04G068510	Watermelon (97103) v2	lsiwmbB133
Lsi01G018580	Bhi03G001941	Wax gourd	lsiwgoB177
Lsi01G018580	Cp4.1LG10g11630	Cucurbita pepo (Zucchini)	cpelsiB051
Lsi01G018580	Carg22453	Silver-seed gourd	carlsiB171

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G018580	Melon (DHL92) v3.6.1	lsimedB166
Lsi01G018580	Silver-seed gourd	carlsiB256
Lsi01G018580	Cucumber (Chinese Long) v3	cuclsiB281
Lsi01G018580	Cucurbita maxima (Rimu)	cmalsiB598
Lsi01G018580	Cucurbita maxima (Rimu)	cmalsiB787
Lsi01G018580	Cucurbita moschata (Rifu)	cmolsiB583
Lsi01G018580	Cucurbita moschata (Rifu)	cmolsiB777
Lsi01G018580	Cucurbita moschata (Rifu)	cmolsiB780
Lsi01G018580	Cucurbita pepo (Zucchini)	cpelsiB055
Lsi01G018580	Cucurbita pepo (Zucchini)	cpelsiB392
Lsi01G018580	Cucurbita pepo (Zucchini)	cpelsiB398
Lsi01G018580	Wild cucumber (PI 183967)	cpilsiB259
Lsi01G018580	Cucumber (Chinese Long) v2	culsiB260
Lsi01G018580	Melon (DHL92) v3.5.1	lsimeB152
Lsi01G018580	Watermelon (97103) v1	lsiwmB156
Lsi01G018580	Cucumber (Gy14) v2	cgyblsiB245