Lsi01G019960 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G019960
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionRING/FYVE/PHD zinc finger protein
Locationchr01 : 26729036 .. 26731971 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAAGTTAAATGGGAGGAGATTCCCAAAAAGTATTATACTCGCAAAGGATGCTGAAGTTTTAGCAATGCCTTTCAGCCACCTGAATGCTCCTTCCATATTCTACTTCTTAATGGTTGAAATTCTCAAAACATATTTGCATGAGTTTGCTTTGGTGGTTTTTGATGACATTTTCTTTTCGTTGCAATTTACTGGAGTACAAGAAACACCTGAAGCTAGTTCTGTAGACTATGCAAGACTGGTAGGTCAATGGAAATAATATAAACATGTTGTTTTTTTTTTTTTTTTTTTTTCCCAAACAAGCTCTAAATTTTCTTGCCCACCACATATCGAGGGAGAGTGTTAAAGGTGATCTAAATAAGACCATAACCAACGGAAGCATAGCTCAACTAGTAAATTCCCACCTCAAATGTATTATCGAACTAAAAAAAAAAATGAAAAAGAAAAGAAAAACTAAGCTATATTGATAAGTAACCCTCGACGCGTTGGATCTAGCAACCATGTTGACAAACAAGACCTTTAGAACTCAACCGCAAAAGACCCCAAATCAAGATGATCTCAGCCCCTAAGAATGGCTAGATGACGGATTACTTAGACGATCATCAAAACCACGAATCGGACAAAGCTTGCGGCTCCCATCGACTCTTGATCTTCGAATCACTCCACAAGCAAGATCGATCAAGTCCAGCTTGAATGATTCTGAACATGCAATCTAAACACCATAGAATTGTAAAGGAAACTTAGCTCAAGGCTAAAAGAAAGCTCAAAGGCTCTTTTTACTAAATTTTTCCAAAATCTCCCTTTTTTGACAAATTACATTACATTATATAAGCCTCAAAATATAACCCTAGACATTCTATGAGGCATTCAAAGAGTAATTGATGACCATTACAACTCATGATCTAAATGTAACATAAAACACATAAAATGACTTAAAAACTGAAAATTACATTTAATTATTACCATAAATCCGAAAATATTCATTTTTAATCAACAACCCATCAATTTGTAACCATCTTTGAGTTGTGAAGCCCCACTTGAAGTCCTTGTTCCATAAATGAAGCTTGATTCTTCATAAATTTCACTTGATTTCTCATAATTGCAAGTTCTCTTGAAGGTGAATTTGAACAACATATAGTGTGCATTCTTGGCGTCGTTCTTAAAGTTCATATGCCACGATTTAGGTTCCTCCGTTCATATCATATATGTTTCTTGCTATTATCACCTATGAGTCTTCACAAGATTTAGAGTGTAGGGCTTAACTAGGTATTATCGTGGAAGGTTATGGAAATCTAACTTGGCCTCTCATTGAGCAAGTAGAAAGATAATTTTGCTGGATTGCTTTATCTGAAGAAGCTTTCCCGGGGATAGTGGCTGTTCATGTTTATATAGAAACGGTAACAGGGAAGGGGCAGGACCTATTATTGTTAGGTAGTGCTAGTGGATAGTGGATACATGCCCCCCCCCTTAGGATCTAGGCGCATGCCTGTATTCCTAGTTAGGTAGGAGCTGGGAGAGTAGGAGAGGCTGTGACTCACTGCTTTTGGATAAGTAAAAGGTAAATTTTATTATTCTTGTACAACTGTTTTAGAGGACGATTTATCAATGTTCCCATTTCCCATTTTTTATTTCTTGTTTTTGACTAATATATGCTATTGGTAACTGTTCCTCATCTTTTGTTTTTCATTTTGAAGAAACATTTCAAAATTTATATATAAATTTTTTAATGGGAAAAACCCAAAACCCAAACCGAATAAAATGGGATAAAACAGCAGCCTTCAAGAGAAAAGTTCCAAAAGAAAACCAAAGAACATCCACGAGCTCATTTAACAAAACAGGAAAAAAACGTAAAAAGGAACAAAAGAACTTCTCTCAACAACTAAAATCCTACCCCTAACCAAACCCAAACCAAGCAAATAACTAAAAGAATGACAGCAAAACTTAAAAACTTCAAGCACTGATGGAATTGTAAAATCTTGCAACAGAAAACAGAATTTAGATGGCGTACCAAAACATGCTCATAGCCTCCAACCTTGTTTTAGGCGGTCAAATTCTTGACTTTTATTTATTTATTTTTTTAGACAACTTCATTGATCATATTAGATTACGAAAGGGGAGAGCTCCAATTCAAGGGAGCTACAAAAAACTTCTCCAATTGGATATTATGAGGTAAAGCGATAGTATAGAAGGATGGGAGGAGATTTAGACCAAGAAGCCATTAATAAAAAGAAAATGAGCAAATGATGAATCCCTATCTTAAAAAGATCCATCGATTTCTTCAATGTTGATATTGTATGCGTGTGTACAACTGTACATAGGTTCACATTGGAAGGGTTGTGTACTCATTGGAAGGGCCCCATCGTTTTATGGCTAGATATTGAGATGCATGTGTTATTTATATATTAACATTTTTTTTCACATTGGCATTAATCATTTTACGTATGAAAATTTGGGAAACTTCAATGCTCAGATTCCAAACTTCTATTCTTTCCATATCTGCAGTTTGTGCTTACCAGGATAAAATATGGACCTGCACGATACTGGGCCATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCATCAAGGACACACGCTGCTCATACGACGTAACTGGGTACATTCTGTACATTCTATTTGGTTGTTTTTCCGTTCTCCACTTCAAGGCGATCTCACAAAATATACAAGTGTTTGATACTTCTTTAAGGTACTGAAATCATGATATATATCCTGTAGGGTTTTGATTTTATGTTGTATTTTAGGTTGTATGAGTGTAAATTTGAGATTGGGAAAGGTATATAAGTATCCAGACAAGATACAAGATACCCTTTAGCTGTATTTCATTGACACCAGAGCCGAGTATTTTTTATTATTTGTTAAAAGGATCTTCAATTCTTTTAAAATTTTAGTAAATTGTTCTCATTTTTG

mRNA sequence

ATGTTCAAGTTAAATGGGAGGAGATTCCCAAAAAGTATTATACTCGCAAAGGATGCTGAAGTTTTAGCAATGCCTTTCAGCCACCTGAATGCTCCTTCCATATTCTACTTCTTAATGGTTGAAATTCTCAAAACATATTTGCATGAGTTTGCTTTGGTGGTTTTTGATGACATTTTCTTTTCGTTGCAATTTACTGGAGTACAAGAAACACCTGAAGCTAGTTCTGTAGACTATGCAAGACTGTTTGTGCTTACCAGGATAAAATATGGACCTGCACGATACTGGGCCATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCATCAAGGACACACGCTGCTCATACGACGTAACTGGGTACATTCTGTACATTCTATTTGGTTGTTTTTCCGTTCTCCACTTCAAGGCGATCTCACAAAATATACAAGTGTTTGATACTTCTTTAAGGTACTGAAATCATGATATATATCCTGTAGGGTTTTGATTTTATGTTGTATTTTAGGTTGTATGAGTGTAAATTTGAGATTGGGAAAGGTATATAAGTATCCAGACAAGATACAAGATACCCTTTAGCTGTATTTCATTGACACCAGAGCCGAGTATTTTTTATTATTTGTTAAAAGGATCTTCAATTCTTTTAAAATTTTAGTAAATTGTTCTCATTTTTG

Coding sequence (CDS)

ATGTTCAAGTTAAATGGGAGGAGATTCCCAAAAAGTATTATACTCGCAAAGGATGCTGAAGTTTTAGCAATGCCTTTCAGCCACCTGAATGCTCCTTCCATATTCTACTTCTTAATGGTTGAAATTCTCAAAACATATTTGCATGAGTTTGCTTTGGTGGTTTTTGATGACATTTTCTTTTCGTTGCAATTTACTGGAGTACAAGAAACACCTGAAGCTAGTTCTGTAGACTATGCAAGACTGTTTGTGCTTACCAGGATAAAATATGGACCTGCACGATACTGGGCCATTTTGTTCGTCTTTTGGTTCCTGGTGTTTGGTATTTGGGCATCAAGGACACACGCTGCTCATACGACGTAA

Protein sequence

MFKLNGRRFPKSIILAKDAEVLAMPFSHLNAPSIFYFLMVEILKTYLHEFALVVFDDIFFSLQFTGVQETPEASSVDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
Homology
[Close]
BLAST of Lsi01G019960 vs. TrEMBL
Match: V4T6Z0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001627mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.2e-14
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 1 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH AHTT
Sbjct: 315 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 358

[Close]
BLAST of Lsi01G019960 vs. TrEMBL
Match: A0A067EB06_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018282mg PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.2e-14
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 1 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH AHTT
Sbjct: 315 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 358

[Close]
BLAST of Lsi01G019960 vs. TrEMBL
Match: I1KNX6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_08G002800 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.2e-14
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 1 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH AHTT
Sbjct: 320 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 363

[Close]
BLAST of Lsi01G019960 vs. TrEMBL
Match: V7CRH7_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G275300g PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.2e-14
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 1 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH AHTT
Sbjct: 317 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 360

[Close]
BLAST of Lsi01G019960 vs. TrEMBL
Match: A0A059B8C9_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H05084 PE=4 SV=1)

HSP 1 Score: 85.1 bits (209), Expect = 6.2e-14
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 1 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH AHTT
Sbjct: 314 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 357

[Close]
BLAST of Lsi01G019960 vs. TAIR10
Match: AT5G08750.3 (AT5G08750.3 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 77.0 bits (188), Expect = 8.6e-15
Identity = 34/44 (77.27%), Postives = 40/44 (90.91%), Query Frame = 1 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R  VLTRI+YGPARYWAILFVFWFLVFGIWASR+HA+H++
Sbjct: 326 VIFFRFVVLTRIRYGPARYWAILFVFWFLVFGIWASRSHASHSS 369

[Close]
BLAST of Lsi01G019960 vs. TAIR10
Match: AT5G63780.1 (AT5G63780.1 RING/FYVE/PHD zinc finger superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 9.5e-14
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 1 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R  VLTRI+YGPARYWAILF+FWFLVFGIWASR++A+H +
Sbjct: 323 VIFFRFVVLTRIRYGPARYWAILFIFWFLVFGIWASRSNASHNS 366

[Close]
BLAST of Lsi01G019960 vs. NCBI nr
Match: gi|449457315|ref|XP_004146394.1| (PREDICTED: uncharacterized protein LOC101218157 [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-14
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
Sbjct: 324 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 367

[Close]
BLAST of Lsi01G019960 vs. NCBI nr
Match: gi|659083003|ref|XP_008442137.1| (PREDICTED: uncharacterized protein LOC103486085 isoform X1 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 3.1e-14
Identity = 40/44 (90.91%), Postives = 41/44 (93.18%), Query Frame = 1 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT
Sbjct: 324 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 367

[Close]
BLAST of Lsi01G019960 vs. NCBI nr
Match: gi|502139775|ref|XP_004503898.1| (PREDICTED: uncharacterized protein LOC101504710 [Cicer arietinum])

HSP 1 Score: 85.5 bits (210), Expect = 6.8e-14
Identity = 39/44 (88.64%), Postives = 41/44 (93.18%), Query Frame = 1 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH+AHTT
Sbjct: 324 VIFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHSAHTT 367

[Close]
BLAST of Lsi01G019960 vs. NCBI nr
Match: gi|641833195|gb|KDO52213.1| (hypothetical protein CISIN_1g018282mg [Citrus sinensis])

HSP 1 Score: 85.1 bits (209), Expect = 8.9e-14
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 1 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH AHTT
Sbjct: 315 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 358

[Close]
BLAST of Lsi01G019960 vs. NCBI nr
Match: gi|747103009|ref|XP_011099689.1| (PREDICTED: uncharacterized protein LOC105178046 isoform X1 [Sesamum indicum])

HSP 1 Score: 85.1 bits (209), Expect = 8.9e-14
Identity = 39/44 (88.64%), Postives = 40/44 (90.91%), Query Frame = 1 

Query: 76  VDYARLFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHAAHTT 120
           V + R FVLTRIKYGPARYWAILFVFWFLVFGIWASRTH AHTT
Sbjct: 339 VVFFRFFVLTRIKYGPARYWAILFVFWFLVFGIWASRTHGAHTT 382

The following BLAST results are available for this feature:
BLAST of Lsi01G019960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi01G019960 vs. TrEMBL
Match NameE-valueIdentityDescription
V4T6Z0_9ROSI6.2e-1488.64Uncharacterized protein OS=Citrus clementina GN=CICLE_v10001627mg PE=4 SV=1[more]
A0A067EB06_CITSI6.2e-1488.64Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g018282mg PE=4 SV=1[more]
I1KNX6_SOYBN6.2e-1488.64Uncharacterized protein OS=Glycine max GN=GLYMA_08G002800 PE=4 SV=1[more]
V7CRH7_PHAVU6.2e-1488.64Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_002G275300g PE=4 SV=1[more]
A0A059B8C9_EUCGR6.2e-1488.64Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H05084 PE=4 SV=1[more]
BLAST of Lsi01G019960 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G08750.38.6e-1577.27 RING/FYVE/PHD zinc finger superfamily protein[more]
AT5G63780.19.5e-1472.73 RING/FYVE/PHD zinc finger superfamily protein[more]
BLAST of Lsi01G019960 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457315|ref|XP_004146394.1|3.1e-1490.91PREDICTED: uncharacterized protein LOC101218157 [Cucumis sativus][more]
gi|659083003|ref|XP_008442137.1|3.1e-1490.91PREDICTED: uncharacterized protein LOC103486085 isoform X1 [Cucumis melo][more]
gi|502139775|ref|XP_004503898.1|6.8e-1488.64PREDICTED: uncharacterized protein LOC101504710 [Cicer arietinum][more]
gi|641833195|gb|KDO52213.1|8.9e-1488.64hypothetical protein CISIN_1g018282mg [Citrus sinensis][more]
gi|747103009|ref|XP_011099689.1|8.9e-1488.64PREDICTED: uncharacterized protein LOC105178046 isoform X1 [Sesamum indicum][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G019960.1Lsi01G019960.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR23012:SF66RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEINcoord: 80..116
score: 8.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G019960Wild cucumber (PI 183967)cpilsiB250
Lsi01G019960Cucumber (Chinese Long) v2culsiB250
Lsi01G019960Melon (DHL92) v3.5.1lsimeB152
Lsi01G019960Watermelon (Charleston Gray)lsiwcgB135
Lsi01G019960Watermelon (97103) v1lsiwmB146
Lsi01G019960Cucumber (Gy14) v2cgyblsiB243
Lsi01G019960Melon (DHL92) v3.6.1lsimedB159
Lsi01G019960Silver-seed gourdcarlsiB259
Lsi01G019960Silver-seed gourdcarlsiB260
Lsi01G019960Silver-seed gourdcarlsiB430
Lsi01G019960Cucumber (Chinese Long) v3cuclsiB279
Lsi01G019960Watermelon (97103) v2lsiwmbB133
Lsi01G019960Watermelon (97103) v2lsiwmbB136
Lsi01G019960Wax gourdlsiwgoB173
Lsi01G019960Cucumber (Gy14) v1cgylsiB572
Lsi01G019960Cucurbita maxima (Rimu)cmalsiB792
Lsi01G019960Cucurbita moschata (Rifu)cmolsiB589
Lsi01G019960Cucurbita moschata (Rifu)cmolsiB780
Lsi01G019960Cucurbita pepo (Zucchini)cpelsiB392
Lsi01G019960Cucurbita pepo (Zucchini)cpelsiB399