Lsi01G020270 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi01G020270
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Golgi SNAP receptor complex member 1
Location	chr01 : 27753816 .. 27763461 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAATTTTCATTTTTATCAATATATTTTTGTAAAATTTGAAAATTCAATTCAATCAACATTATTTATTTATTTATTAATTTAATTTGAAACAGTAGAATTTTGGGGGGTTTGTATGAAAAGGGTAATTAAGCATTTGTGATAGTGATAACTAAAGCAAAATGGGTTTTGGAGGGTGAATTTTGTGGATGGCAATGACGGATCAGAGCCTTGAGTTGCAGGAGTCCGGTTGGGAGGAGCTGAGGCGTGAGGCTCGAAAGATCGAGGGCGATCTCGATGTCAAGCTCTCCTCTTATGCAAAGCTCGGTACCAGGTTCACTCAAGGAGGTTTGTTCATTTCACTATCCTCTCATTCCTTACCCCTTTTATGCTTTACAATCTCTATATGCAAATTCCTACTTGGAATTCACTGAATTCACTGAATTTCATATATGTCTTATGCCCCCATTGCTTCAAAACCATATTCATCATTTGTGTTATTCATTCCATACTGCTAATTAAAGTTAAGTCAATTGTCTTGTGTTCTTAATTTGTTTAATGTCCCCAAAACATTACATCCACCTTGCAGCTTATAAATTGCTCCAGAACATATATATATATATATATATATATATATATATATATTTTAAGTTAATAAACGAATATCCACAACCCTAATCTTTCTATGCACCTCTTAAACACCACTAAATGGGAAAGAATATTTTGCCTCAATCTAAAGCAATGCTAATGATTTGAATCTTTCTACTTCTAGTCCTAATTTCTGCACTACTTTGTTTGAGCTGACTAAATGTAAACCCTATATATACATATATATATTATTTGAGTAGCTATACTGGGTTCTGTAGTAGTCTTTGTTCTTAGATGAGGTTATATGGTTGATAGTTTATGTGCTTGTGATCAGGTTATGTGGATTCTGGTTCACCATCTGTTGGTTCCAACAGATCATGGAAGTCTATGGAAATGGAAATCGAATCTTTACTTGAGAAATTGTTGGACGTTAATGATTCAATGAGTCGATGTGCTGCATCTGCGGCATCAGCTACCTCCATAAATCAAAAACTAGCAAGACACAGGGATATCCTCCATGAATTTACACAGGTTTTGACTTTCTTTTTCTGTTTTTATATCTTTTTTTTTTTTTAATTATTGTTTTTATGATTAAGATCCTAATGAGCTCATTTAAATAAATTAAAAAAAAGAAAAAGAAAAAAGGAGCCTAACAAGTATTAATGATTTGTAGTTCCAAATTCTTTGGGCTATTTATTTTGAAGTTTATAAAATGCTATTTGGAGAAATGCATATTTACTGGGAGGAAAGGGTTGAGTTAGCAAGAAAATATGTGACTTCTTGGAGTACATTGTATTTGATTTTACTTGTGAAGCTTTCGAAACACTTCTCCTTTTCCTCTTTGACACAATCCCAATTTTCTTAAACGATTTATCTTATTACTATCCCATCTAAAAACTCCCTTTTTAACCTCTCTTAAGGTTTCACCGTTTGTTATCATGTTTCTGCCAAGGCCCTTCCCCTTTCATCGTTTATATCTCCCCATGTTTGCTATATTAGAGATTCTTTACCACTACCAGGCTTTGATCAATTAACTACATGATTGAGATCAAGATGCTATCTTAGATCATTTAAAATTTTAGCCAGTTAGGGGTCGGCAACATGTAAAACATCCTGCTGATTTCCATTGTAAGGATGTTTAGTTTTAGCCTTTAGGTTGGTGACCAAATTTTCCTTAAGCTCCAACCATACATACTTGGGTTGAGTTATTATTATTATTATTATTATTATTATTATTATTATTATTATAATTAATTCTTTAATTATATTTTAATGATATGATTGGACTGAGAAATTGTCTCCTCGGTTTTATTGTTCCTCTCCTACGGAAGCAAGAGATGCCCTTTATGTAATTTCTCTTTAAAATTGAAAACAACAACAAAACAACCCCTCATGGCCTTGCATCTGTAAACCAGAAGGTGAAAATCTAATTAAACTTTATTCATTTCCCATTTCATTTTCATCAAAAGAAACTAAAGTGAAACAGAATGAAAGAAGAAAGTTCCCCAAAATGCTCCACGACAGAAATAAAAAACACAGAAAATGGAAAAAAGCTGAAAAAAAGACAAGAAGTCGAGATCAAGACCAAAAAAAAGAAAAGATCAAAAGCGCCATTCAGAAGAAATGTCCAATTGGACATGAAAGAGAAGGATACCCACTACAAAAATCATCATCAAAACGTTATAGAGAAAGAGGAATTAAAAGAAAACACAACCACAATGGGTCAATGGGAATTTATTGTTACGGCCATTGTGCTTTGCAGTATTGTGTTTGGTGATTAGTGCTGCATAAAGCACTTTACTGTTACGATTTGAAGTTTATGATGATAAGTCTTAGTTTGTAGTTAGTTAAATCACTAATGAACCCAAAAACTTTAGCTAATAGGTTATGGTAAATTGAATCTCTTATCTATACGTTGACACTCCCTGGGCTTGAAAATTTGCACAAGACCCTACAAGGGAATCAATATTATTAGGAGAGGAAATGACTTTACAGAGGTTCAAACACAGAACCTCGTGCTCTATTACCTACTAGAATTTTTAAGAAGTAAAATTGTTATCTTTCTTCAATATAATTTGAATCAAGTACATGTCTTCTATGATAGGAGAAAAACCACCTGCAGATAAGGAAAAATACTACAAATTTAAATACTAGATAAATCCAACAAATGTGTTAGAAGGTAGAAGGAGGAGAAGATGGAGAGGTGTTGAGTAGGGTAGTAGACACTAGACAGCTTGTCTGGTGAAAGATCAGACCCTCGCTACAAGTCTGGAAATTGTATCTCTCATTGTCTTTTTAAAAATCTTTTTGCGACATTCTTTCTTTGCTATTGGTTGACTTTTCTGTGAATATACCTGTCACAGATACCAGAACTGTGGAAAAATTGCTAAGCTGAATTTGGTTTTCTAAGAACGAACAAGATAGAGGTTGTGAGGTTTGGGGATGTATGAGAGTTGTGATGTTCCCGTTTCTTTATTATGGTTAATTGGAGTATTTTTTTTCTTTATAACATTTATTCGGTGATGCAAGTTTGAGATGGTCTAGTTCTCCCTTCCCCCTCTATTTCGATTAGTTGGAGATGATGAGAGTGCTAAGGAGGTGTCAACATAGTTGAGATGTTCTGGTGCACTCGTTAATTCCTTGTTCTTTTTGCTCTTGTATCTCTCTATGTAACTTGAGCATTAGTCTCATTTCATTATTTCAATGAACAGATTCGTTTCCCTTTTTTCAAAAAAATTTCAAAGGACATTCACGCCTTTTGTCTTAAAAATAAATCCTTCTTCAATGATTTAAAGTTGTGAAATGGGTAGTTCATGTGGAATAATATTGTAAAATATGTTTGCTCAATAAACGTTTTCAGTGTCACAAATGTGCCTCCAGTCCTTGTTTAGTTGAGAAGGATCTGAGTATAAAGGTTTCACATTCCAATGACATTTGATAGGATTGGTCATTGTAGTAGTGGTTTTGGAATATTATTAGGGTGCTAAGGGGATATTAGTAATTAAATAAGGAGTTTGTTAGGGAGAGTTGTTATATATAGAGTGAGGGAAAAAGGTTTGAAGGCAAGCATTGATTTAGTTGGCTTTCGGCTTGAGTGAGAGTACCCAAGAGAGGGAGGGTCCAAGTACCTTGGATTCTTGGGCTTATCTTGTACTTCTTTTATCTTTTGTATTTCAACATATTTGGGGTTCTAACATGATGTTATCACCTATGTAGTAGACCCCCTACCCAGTTGGCTGTCACACGATGCTTGTGCTAATGCCATCCTTCATCATGCCTATATCCGTCCGTTGTTTACCACACATTTGTTTGTCCTCCATCTCCACTACTATTGCTGATTATAGTTAATTAATTGAAAGTCACTCACCCCATCAAATGGATCCAGTTGCACTTTGTAGTACCAAATGTTTGAAAGGTTAAAAGTCAAATTTCTTGAGGGTGTTAGATGTGACCTTGGGGATTGGGTTATGTTAATTTGTTTATTGAATAAAAGTAGAAGAGAGAAAGAAAGAAAGAAAGAAAAGTGAACAGGAAAAAGAAAAAGAAAGAAAGAAAGAAATAGAAGTGAAGAGGACAAAAAAGAGAGAGATTACATATTCCATCTACTTTTTTAAAAATCTCTTGCAAGGAAACCTATTGTTTAACTAGACAAGGTGTGTTTCAAGGCAGGTAGGTAACGATAGAAGTGTTGTCAGAGTAATTAGGAATATTTTTAAAGTATTAAGTGTTATTGGAGTACTTAGAAATATTTAAGGTGTCAAGGGTATATTGGTCATCAACCAAGGAATTGGTTATAATTGGAGGGAGAATGAGGGAGTGAAGATAGGCAATTGTTTAATTGATTTTCACTCAAGAAGGGGGTTCTATGTACCTATCTATGTATCTATGCTAAGAAGCACAGACACTTTAGTTTGGCTAGCATGTCCGTGTCCGATACGTGTCGGACACTCCGACACTTCGACACTTGTTGGACACGTATCGGACACTTGTTAGTGCAACAAATATGTTAGACATGCATTGAACACTTGTTGAGTAGACTAAAAAGAAACATATATAACAATAATAATAACTTTTGAGTGTAAAATACATCAAGGGCTAGTCTTTTAAGCATATAAATGTATCAACTCATTTACTTTCAATTTTATTTTGGTATGTAAATGATATATATTTTTAAAAATGTATATTTAAATAAACGTGTCCTTGCCGTGTCGTGTCTTAGATATTTAAAATATGGCATGTCGCTGTGTCCGTGTCGTGTCGTATCCGTATCCGTGCTTCTTAATATCTATGTATCTATCTATATGTGTATATATATAAGAAAGAAAGCTGAAATATATTAGTGCAGAAAGATCATAAAAAAGGCAAGATGAGATGTCCCCTCAAGCCAGGGTTATGCAATGGATCTTCAATTGGCAAAAACTAGTTCACAATCTAGTTACAAGAAAGTCCAGAATGAGAAGAGAAGTTGGATGTGTGTTTCATAGAAATTCCGCAGGGATGCGATGCCATTACCGTGCTAGGCTAGAGGATTTTAGCCGATCTATGAAAAGGAACAGCATTAAGCTGGATCAAGGGCCTCATTGTCTTCTCTGGAGAAGCTCCAGCTAATCCCAAAAGCGCTGGGGTTCTTGGGCCTAATAACATTTGCTTAAGTACAGTGGAGAAGAAGGTAATGATGATCCTTTGAAGTTCTGTTACACAAAATGCACCAGCTTGGAGAATGGGAAAGATTGGGACACCTCCTTTGCAGCAAGTCATAAGTATTCAACTTCACTTGAACAAACACAAGAAAACCCTTCACCTCCTGAGGAATACTGGCCTTCTTAAATGATTTTGATTATTGCATCTTCGAACGGGGCATGCATGTGTAAGGCCCCAATTAAGCATATTTATGAGAAGAGTGGTAAAAAAAGATGGATGAAAAGGATTTCATAGAAGAGCTATTGGATGAGTTACATCGGTCTATGATTTACTCAAAGCTTGACCTTCGATCTGGATATCTGTTAGGTTCCTTTTATCCTGCACTCAGTAAACCCAACAAGGAAACAGATAGAATGGAGCAACAGAACTCTGTGATATGCACTATTGAAGAAAAAAATGATTACAATGTATTTACAAGGCCTCCAAGGACAGCAAACACCAAATAGCAGTGATAAAGATAACCTAAATGGAAATAACAAGAAATGAGAATGAAAATAGCAAAACCAGCACGTTGAAGAGAGTTGGTGGTCCTTTCCTTCCTAAAAGTGATGTAAGAAGAATAGGGGTTAATTGGGTAATTAAGTAATATTCTAGATTAATTCCCTTTTTACCCCACTTGTAATAAAGCTCTATAAATAGAAATCTTCCCCTTTTGTATCAAACACATTATTCATTCTAATAAAAGATTCACAAGCTTGATTCTTGGAAAGATCCAGAATTAATTTCTTCTTACATCAATTTAGGCTACATCAATTACCAAATTGATGCAGCCTAAAGAGATAAAATGAGAAATCTCTCCAAGAATCAAGATTGTGGATCTTTTATTAGAATGAATAATGTGTTTGATACAAGAGAGAAGATTCCTATTTATAGAGCTTTATTACAAGTGGGGTAAAAAGGGAATTAATCTAGAATATTACTTAATTATCCAATTAATCCCTATTCTTCTTACATCAAAAAGCCACTCTGAGCCTTTACCAAAATAAGTCTGCCTCCCTGATTCCCATGCTTCCCTATTTGTAGTAATATTCCTGGTACCCCCCCCCCCCCCCCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTCAACGGGGATTACATTTTTACCTTTTACCATTGAGCTAAAGGTACCTTCCCTTCCCCCCCCCCCCCCCCCCCCCCCAAGGTCATTCTTCCTCAATAACGTCCTTGGCAGCCGTTGTCTTCTGTGAAGTTCCTCTTCTCCGTTTGTAAGTATATAATATTGGGGTTTAGCAATATCACTCGATAAGGATGGATGAAAAGAATATCTACAAGACAACATTTTTTACCCACGAGGGACATTACGAGTTCAAGGTTATGCCGTTTGGACTAACGAATGCCCCAGCCATCTTCCAGTCATTGATAAATCAAATCTTCAGACCCTACTTGAAGGTTTAGCTTGGTGTTATTTGATGATATATTGGTGTACTTAGATACTCACGAAAAACATCTAGGATTCTTTTCAATATCCTTACAGATAATGAGTTATACGCTAATAGGAAGAAATGTTTTTTTTAATAATGGTTCTTCTGTACCATATTCTAATTTCTGATTGACACTTGAAATTGCGTACGTCATTTGCTTTAATGATTTATGCATCCACCTTGCTACTTCCTTGATAGAAATGCTTTACTCAACAACATTGAAGTAATAAAGAATGAAAGATATCTATGTACTTCAGGAATTCAAACGAATCAAAGGAAACATTAATTCAATGAGGGAACATGCAGAACTTTTGAGTTCTGTTAGGGATGACATCAACGAGTATAAGGTTAGCATGACCACGCCTGTTGACATTGTTACATGGAATATGTTTATATTCAATGCATGTTAAAAAGTAACTCCCACCCAATTTGTTTCGTACAGTCACCTGGAACCATGTCTCCAAGGGTGCAATTACTGCGGGAAAGAGCTGCTATTCATGGAAGTATTGCTCATGTAAGCGTCAATAAAATTTATTGCTGATCTAGTCTCTTTCTTCAATTCCCTTGCCAAGTGTAGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTGAAGTAAAATGTTATATTTAGGATTTGATATGTTGTTTAGCATTATGATATTATATTAAATAGCCATTTTAATCATGGATTTCGATGTTTTGCCGCACTTCATGTTTTTCTTTTCCTTTTTAATTTATCTTCTGTAGATGGACGAAGTAATAAGTCAAGCCCAAACTACAAGGGCAGTCTTAGGTAACCAAAGGGCCTTATTCGGAGATGTTCAAGGAAAAGTGAAGCTTCTAAGTGACAAATTCCCAGTAATACGCGGCCTTCTAGGTAATTTATAAACATTGGATAAACTGTGCCTCTATTATTTCTGCTCCGTTTGGGCTAATAGTAGTTAGTTTCTGATGTCATAATCAGGTTCAATTAGAAGAAGGCGGTCAAGGGACACACTTATTCTGTCTGGAGTCGTTGCAGCATGTACCTTGTTTCTTATTATCTATTGGCTTTCAAAATGACAAGGTGCAAATTTGAAAATTTGGGGGTTTTGCTTTTGTAACTTTCTTTAAGTAAGCAACATCGAGATTGAAGATTTCTAGTGTTTCTTGCGTCATTAAATTCGGGTGTCTTTTTCTTACCTTCAATAATACCACCATTTTGCCATTTCGATTGGAGGTAAAACTTTGAAGCCTACATGCTAGCATCTTATCCTGGGAATCCTCACAGGATTTGTACTTGTACAGTAATAACAAAGCAAATAGAAAGATTGCCTTCCTATTGATGGAATCTTACTCTCCTCCTGGGAAAGATGGAAGCAGTGCTCAACATTGATAGACTCCTTTATTCTTGTCTGGCTTGCCCAGTACTAAAATACAGCCGACAAATATTAGTGATTACTCAAAAGGTAGAACTGACTGAATTGGGAAAGGCTGAAGTAGCCACTTGGATTTTCAAACCCAGCCTATGAAGAATCAATACTCCTTCCATTACTTGACTGAGGTTAGACGGAAAACTATGATGCGGCCTTTTTGTTTTTACCCATGTGATAGGAATCGATATTGAGAAGTATTATTCAAGAGAAAACGATTGGCCTAGGGCAAGTTACAATATCCAGCCTCACTCGGAAGCAAGGATCCAATCCTCGCCCTCTCGATTACTATTGGATGATGAAGCCACACTCCCCATTACATAAGCCATTCTCTCTTTACCCTTCCTATGATATTGTAATAGAATTGGTGGCCAAACACCATGCTCCTAGAGAAGAGGTAGAAACAAGGGTTCAACTTCGGATGGTTATACTCCAAGAATTTGAGTCATTATGATAGTAGGGGACAGTGTTGTGTCCACATAACATAGCACGACCCTAAAGTGACGACCATGATTATGCTCGTCTTGTTACCAAACACCATGGTTTTGCACTAAGATGGATGGAGTAAATGGACTAGAGGTTAGTTGATGACTTGGGAAAAGGGCAAGTGCAACAATGGAGAGTGAAATGCCTCATGTGTATAGTCTTTTTAAGGCAGCATCAAAATGAAGTTATGACACACAACCGAAGTGACACTCTCGCTCAACCGGATGTAGCTCGTTTGAGTGCGTGGAATATGGCTTGTCGCTTAGGGCGAACTATTGGGACCTTGGATATGTGGGAGGAAAGAGTGATTGATAATGAGCACAACCTAAGCTAAGCTGGTCAACAAAAGGTCCACGGACTTAAGTTGAGCAAGACATTGGCAGATGTGAAGTGAGATATATGTCTCGAATATATGGCACCATTCGTTTTGTTGACTCTTTTTTGTTGAGACGAGATATGTTAACATCTATTCGCAATTGGCAACCATATTTTTTTTT

mRNA sequence

AAAATTTTCATTTTTATCAATATATTTTTGTAAAATTTGAAAATTCAATTCAATCAACATTATTTATTTATTTATTAATTTAATTTGAAACAGTAGAATTTTGGGGGGTTTGTATGAAAAGGGTAATTAAGCATTTGTGATAGTGATAACTAAAGCAAAATGGGTTTTGGAGGGTGAATTTTGTGGATGGCAATGACGGATCAGAGCCTTGAGTTGCAGGAGTCCGGTTGGGAGGAGCTGAGGCGTGAGGCTCGAAAGATCGAGGGCGATCTCGATGTCAAGCTCTCCTCTTATGCAAAGCTCGGTACCAGGTTCACTCAAGGAGGTTATGTGGATTCTGGTTCACCATCTGTTGGTTCCAACAGATCATGGAAGTCTATGGAAATGGAAATCGAATCTTTACTTGAGAAATTGTTGGACGTTAATGATTCAATGAGTCGATGTGCTGCATCTGCGGCATCAGCTACCTCCATAAATCAAAAACTAGCAAGACACAGGGATATCCTCCATGAATTTACACAGGAATTCAAACGAATCAAAGGAAACATTAATTCAATGAGGGAACATGCAGAACTTTTGAGTTCTGTTAGGGATGACATCAACGAGTATAAGTCACCTGGAACCATGTCTCCAAGGGTGCAATTACTGCGGGAAAGAGCTGCTATTCATGGAAGTATTGCTCATATGGACGAAGTAATAAGTCAAGCCCAAACTACAAGGGCAGTCTTAGGTAACCAAAGGGCCTTATTCGGAGATGTTCAAGGAAAAGTGAAGCTTCTAAGTGACAAATTCCCAGTAATACGCGGCCTTCTAGGTTCAATTAGAAGAAGGCGGTCAAGGGACACACTTATTCTGTCTGGAGTCGTTGCAGCATGTACCTTGTTTCTTATTATCTATTGGCTTTCAAAATGACAAGGTGCAAATTTGAAAATTTGGGGGTTTTGCTTTTGTAACTTTCTTTAAGTAAGCAACATCGAGATTGAAGATTTCTAGTGTTTCTTGCGTCATTAAATTCGGGTGTCTTTTTCTTACCTTCAATAATACCACCATTTTGCCATTTCGATTGGAGGTAAAACTTTGAAGCCTACATGCTAGCATCTTATCCTGGGAATCCTCACAGGATTTGTACTTGTACAGTAATAACAAAGCAAATAGAAAGATTGCCTTCCTATTGATGGAATCTTACTCTCCTCCTGGGAAAGATGGAAGCAGTGCTCAACATTGATAGACTCCTTTATTCTTGTCTGGCTTGCCCAGTACTAAAATACAGCCGACAAATATTAGTGATTACTCAAAAGGTAGAACTGACTGAATTGGGAAAGGCTGAAGTAGCCACTTGGATTTTCAAACCCAGCCTATGAAGAATCAATACTCCTTCCATTACTTGACTGAGGTTAGACGGAAAACTATGATGCGGCCTTTTTGTTTTTACCCATGTGATAGGAATCGATATTGAGAAGTATTATTCAAGAGAAAACGATTGGCCTAGGGCAAGTTACAATATCCAGCCTCACTCGGAAGCAAGGATCCAATCCTCGCCCTCTCGATTACTATTGGATGATGAAGCCACACTCCCCATTACATAAGCCATTCTCTCTTTACCCTTCCTATGATATTGTAATAGAATTGGTGGCCAAACACCATGCTCCTAGAGAAGAGGTAGAAACAAGGGTTCAACTTCGGATGGTTATACTCCAAGAATTTGAGTCATTATGATAGTAGGGGACAGTGTTGTGTCCACATAACATAGCACGACCCTAAAGTGACGACCATGATTATGCTCGTCTTGTTACCAAACACCATGGTTTTGCACTAAGATGGATGGAGTAAATGGACTAGAGGTTAGTTGATGACTTGGGAAAAGGGCAAGTGCAACAATGGAGAGTGAAATGCCTCATGTGTATAGTCTTTTTAAGGCAGCATCAAAATGAAGTTATGACACACAACCGAAGTGACACTCTCGCTCAACCGGATGTAGCTCGTTTGAGTGCGTGGAATATGGCTTGTCGCTTAGGGCGAACTATTGGGACCTTGGATATGTGGGAGGAAAGAGTGATTGATAATGAGCACAACCTAAGCTAAGCTGGTCAACAAAAGGTCCACGGACTTAAGTTGAGCAAGACATTGGCAGATGTGAAGTGAGATATATGTCTCGAATATATGGCACCATTCGTTTTGTTGACTCTTTTTTGTTGAGACGAGATATGTTAACATCTATTCGCAATTGGCAACCATATTTTTTTTT

Coding sequence (CDS)

ATGGCAATGACGGATCAGAGCCTTGAGTTGCAGGAGTCCGGTTGGGAGGAGCTGAGGCGTGAGGCTCGAAAGATCGAGGGCGATCTCGATGTCAAGCTCTCCTCTTATGCAAAGCTCGGTACCAGGTTCACTCAAGGAGGTTATGTGGATTCTGGTTCACCATCTGTTGGTTCCAACAGATCATGGAAGTCTATGGAAATGGAAATCGAATCTTTACTTGAGAAATTGTTGGACGTTAATGATTCAATGAGTCGATGTGCTGCATCTGCGGCATCAGCTACCTCCATAAATCAAAAACTAGCAAGACACAGGGATATCCTCCATGAATTTACACAGGAATTCAAACGAATCAAAGGAAACATTAATTCAATGAGGGAACATGCAGAACTTTTGAGTTCTGTTAGGGATGACATCAACGAGTATAAGTCACCTGGAACCATGTCTCCAAGGGTGCAATTACTGCGGGAAAGAGCTGCTATTCATGGAAGTATTGCTCATATGGACGAAGTAATAAGTCAAGCCCAAACTACAAGGGCAGTCTTAGGTAACCAAAGGGCCTTATTCGGAGATGTTCAAGGAAAAGTGAAGCTTCTAAGTGACAAATTCCCAGTAATACGCGGCCTTCTAGGTTCAATTAGAAGAAGGCGGTCAAGGGACACACTTATTCTGTCTGGAGTCGTTGCAGCATGTACCTTGTTTCTTATTATCTATTGGCTTTCAAAATGA

Protein sequence

MAMTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNRSWKSMEMEIESLLEKLLDVNDSMSRCAASAASATSINQKLARHRDILHEFTQEFKRIKGNINSMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAVLGNQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIYWLSK

Homology

[Close]

BLAST of Lsi01G020270 vs. Swiss-Prot
Match: GOS12_ARATH (Golgi SNAP receptor complex member 1-2 OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=2)

HSP 1 Score: 391.7 bits (1005), Expect = 5.7e-108
Identity = 202/257 (78.60%), Postives = 225/257 (87.55%), Query Frame = 1


Query: 3   MTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQG---------------- 62
           MT+ SL+LQESGWEELRREARKIEGDLDVKLSSYAKLG RFTQG                
Sbjct: 1   MTESSLDLQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGDTDLVMNYEKVLKCVL 60

Query: 63  --GYVDSGSPSVGSNRSWKSMEMEIESLLEKLLDVNDSMSRCAASAASATSINQKLARHR 122
             GYVD+GSP+VGS RSWKSMEMEI+SLLEKLLD+NDSMSRCAASAA  TS+ QKLARHR
Sbjct: 61  VSGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKLARHR 120

Query: 123 DILHEFTQEFKRIKGNINSMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSI 182
           DILHE+TQEF+RIKGNINS+REHAELLSSVRDDI+EYK+ G+MSP VQ+LRERA+IHGSI
Sbjct: 121 DILHEYTQEFRRIKGNINSLREHAELLSSVRDDISEYKASGSMSPGVQVLRERASIHGSI 180

Query: 183 AHMDEVISQAQTTRAVLGNQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILS 242
           +H+D+VI QAQ TRAVLG+QR+LF DVQGKVK L DKFPVIRGLLGSI+R+RSRDTLILS
Sbjct: 181 SHIDDVIGQAQATRAVLGSQRSLFSDVQGKVKNLGDKFPVIRGLLGSIKRKRSRDTLILS 240

[Close]

BLAST of Lsi01G020270 vs. Swiss-Prot
Match: GOSR1_MOUSE (Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1 SV=2)

HSP 1 Score: 149.4 bits (376), Expect = 4.9e-35
Identity = 87/239 (36.40%), Postives = 137/239 (57.32%), Query Frame = 1


Query: 15  WEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSN-----------RSWK 74
           WE+LR++AR++E +LD+KL S++KL T ++  G  D G     S+           R ++
Sbjct: 9   WEDLRKQARQLENELDLKLVSFSKLCTSYSHSGSRDGGRDRYSSDTTPLLNGSSQDRMFE 68

Query: 75  SMEMEIESLLEKLLDVNDSMSRCAASAASAT---SINQKLARHRDILHEFTQEFKRIKGN 134
           +M +EIE LL +L  VND M+    SA   +   ++   L RHRDIL ++T EF + K N
Sbjct: 69  TMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query: 135 INSMREHAELLSSVRDDINEYKS-PGTMSPRVQL-LRERAAIHGSIAHMDEVISQAQTTR 194
             ++RE   L+ SVR DI  YKS  G  + R +L L+E   +  S   ++E IS A  T+
Sbjct: 129 FTAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188

Query: 195 AVLGNQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIY 238
             + +QR +   +  K+  L+++FP +  L+  I  R+ RD+LIL GV+  CT+ L++Y
Sbjct: 189 ENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

[Close]

BLAST of Lsi01G020270 vs. Swiss-Prot
Match: GOSR1_RAT (Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.1e-34
Identity = 86/239 (35.98%), Postives = 136/239 (56.90%), Query Frame = 1


Query: 15  WEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSN-----------RSWK 74
           WE+LR++AR++E +LD+KL S++KL T ++     D G     S+           R ++
Sbjct: 9   WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFE 68

Query: 75  SMEMEIESLLEKLLDVNDSMSRCAASAASAT---SINQKLARHRDILHEFTQEFKRIKGN 134
           +M +EIE LL +L  VND M+    SA   +   ++   L RHRDIL ++T EF + K N
Sbjct: 69  TMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query: 135 INSMREHAELLSSVRDDINEYKS-PGTMSPRVQL-LRERAAIHGSIAHMDEVISQAQTTR 194
             ++RE   L+ SVR DI  YKS  G  + R +L L+E   +  S   ++E IS A  T+
Sbjct: 129 FMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188

Query: 195 AVLGNQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIY 238
             + +QR +   +  K+  L+++FP +  L+  I  R+ RD+LIL GV+  CT+ L++Y
Sbjct: 189 ENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

[Close]

BLAST of Lsi01G020270 vs. Swiss-Prot
Match: GOSR1_CRIGR (Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1 PE=1 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.1e-34
Identity = 86/239 (35.98%), Postives = 136/239 (56.90%), Query Frame = 1


Query: 15  WEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSN-----------RSWK 74
           WE+LR++AR++E +LD+KL S++KL T ++     D G     S+           R ++
Sbjct: 9   WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFE 68

Query: 75  SMEMEIESLLEKLLDVNDSMSRCAASAASAT---SINQKLARHRDILHEFTQEFKRIKGN 134
           +M +EIE LL +L  VND M+    SA   +   ++   L RHRDIL ++T EF + K N
Sbjct: 69  TMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query: 135 INSMREHAELLSSVRDDINEYKS-PGTMSPRVQL-LRERAAIHGSIAHMDEVISQAQTTR 194
             ++RE   L+ SVR DI  YKS  G  + R +L L+E   +  S   ++E IS A  T+
Sbjct: 129 FMAIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATK 188

Query: 195 AVLGNQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIY 238
             + +QR +   +  K+  L+++FP +  L+  I  R+ RD+LIL GV+  CT+ L++Y
Sbjct: 189 ENMTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 247

[Close]

BLAST of Lsi01G020270 vs. Swiss-Prot
Match: GOSR1_PONAB (Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.1e-34
Identity = 88/237 (37.13%), Postives = 138/237 (58.23%), Query Frame = 1


Query: 15  WEELRREARKIEGDLDVKLSSYAKLGTRF----TQGGYVDSGSPSV-----GSNRSWKSM 74
           WE+LR++AR++E +LD+KL S++KL T +    T+ G  DS   +        +R +++M
Sbjct: 9   WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSSQDRMFETM 68

Query: 75  EMEIESLLEKLLDVNDSMSRCAASAASAT---SINQKLARHRDILHEFTQEFKRIKGNIN 134
            +EIE LL +L  VND M+    SA   +   ++   L RHRDIL ++T EF + K N  
Sbjct: 69  AIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFM 128

Query: 135 SMREHAELLSSVRDDINEYKS-PGTMSPRVQL-LRERAAIHGSIAHMDEVISQAQTTRAV 194
           S+RE   L+ SVR DI  YKS  G  + R +L L+E   +  S   ++E IS A  T+  
Sbjct: 129 SIRERENLMGSVRKDIESYKSGSGVNNRRTELFLKEHDHLRNSDRLIEETISIAMATKEN 188

Query: 195 LGNQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIY 238
           + +QR +   +  K+  L+++FP +  L+  I  R+ RD+LIL GV+  CT+ L++Y
Sbjct: 189 MTSQRGMLKSIHSKMNTLANRFPAVNSLIQRINLRKRRDSLILGGVIGICTILLLLY 245

[Close]

BLAST of Lsi01G020270 vs. TrEMBL
Match: A0A0A0L102_CUCSA (Golgi SNAP receptor complex member 1 OS=Cucumis sativus GN=Csa_4G438030 PE=3 SV=1)

HSP 1 Score: 456.4 bits (1173), Expect = 2.1e-125
Identity = 235/241 (97.51%), Postives = 239/241 (99.17%), Query Frame = 1


Query: 1   MAMTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNR 60
           MAMTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNR
Sbjct: 1   MAMTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNR 60

Query: 61  SWKSMEMEIESLLEKLLDVNDSMSRCAASAASATSINQKLARHRDILHEFTQEFKRIKGN 120
           SWKSMEMEI+SLLEKLLDVNDSMSRCAASA  ATSINQKLARHRDILHEFTQEFKRIKGN
Sbjct: 61  SWKSMEMEIQSLLEKLLDVNDSMSRCAASATPATSINQKLARHRDILHEFTQEFKRIKGN 120

Query: 121 INSMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAV 180
           INSMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAV
Sbjct: 121 INSMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAV 180

Query: 181 LGNQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIYWLS 240
           LGNQRALFGDVQGKVK+LSDKFPVIRGLLGSIRRRRSRDT+ILSGV+AACTLFLIIYWLS
Sbjct: 181 LGNQRALFGDVQGKVKVLSDKFPVIRGLLGSIRRRRSRDTIILSGVIAACTLFLIIYWLS 240

Query: 241 K 242
           K
Sbjct: 241 K 241

[Close]

BLAST of Lsi01G020270 vs. TrEMBL
Match: W9QP30_9ROSA (Golgi SNAP receptor complex member 1 OS=Morus notabilis GN=L484_020869 PE=3 SV=1)

HSP 1 Score: 422.9 bits (1086), Expect = 2.6e-115
Identity = 214/239 (89.54%), Postives = 231/239 (96.65%), Query Frame = 1


Query: 3   MTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNRSW 62
           MTD SLELQESGWEELRREARKIEGDLDVKLSSYAKLG RFTQGGYVD+GSP+VGS+RSW
Sbjct: 1   MTDTSLELQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSSRSW 60

Query: 63  KSMEMEIESLLEKLLDVNDSMSRCAASAASATSINQKLARHRDILHEFTQEFKRIKGNIN 122
           KSMEMEI+SLLEKLLD+NDSMSRCAASA  ATS+ QKLARHRDILHEFTQEF+RIKGNIN
Sbjct: 61  KSMEMEIQSLLEKLLDINDSMSRCAASATPATSVTQKLARHRDILHEFTQEFRRIKGNIN 120

Query: 123 SMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAVLG 182
           SMREHAELL SVRDDI+EYK+ G+MSPR+QLLRERAAIHGSI+H+D+VISQAQTTRAVLG
Sbjct: 121 SMREHAELLCSVRDDISEYKASGSMSPRMQLLRERAAIHGSISHIDDVISQAQTTRAVLG 180

Query: 183 NQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIYWLSK 242
           +QRALFGDVQGKVKLLSDKFP+IRGLLGSIRRRRSRDTLILS V+AACTLFLIIYWLSK
Sbjct: 181 SQRALFGDVQGKVKLLSDKFPIIRGLLGSIRRRRSRDTLILSAVIAACTLFLIIYWLSK 239

[Close]

BLAST of Lsi01G020270 vs. TrEMBL
Match: A0A061E1Z0_THECC (Golgi SNAP receptor complex member 1 OS=Theobroma cacao GN=TCM_005547 PE=3 SV=1)

HSP 1 Score: 418.3 bits (1074), Expect = 6.3e-114
Identity = 212/239 (88.70%), Postives = 230/239 (96.23%), Query Frame = 1


Query: 3   MTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNRSW 62
           MTD  L+LQESGWEELRREARKIEGDLDVKLSSYAKLG RFTQGGY+D+GSP+VGS+RSW
Sbjct: 1   MTDPILDLQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGGYLDTGSPTVGSSRSW 60

Query: 63  KSMEMEIESLLEKLLDVNDSMSRCAASAASATSINQKLARHRDILHEFTQEFKRIKGNIN 122
           KSMEMEI+SLLEKLLD ND+MSRCAASAA  TS+ QKLARHRDILHEFTQEF+RIKGNIN
Sbjct: 61  KSMEMEIQSLLEKLLDTNDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNIN 120

Query: 123 SMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAVLG 182
           SMREHAELLSSVRDDI+EYK+ G+MSPR+QLLRERAAIHGSIAH+D+VI+QAQTTRAVLG
Sbjct: 121 SMREHAELLSSVRDDISEYKASGSMSPRMQLLRERAAIHGSIAHIDDVINQAQTTRAVLG 180

Query: 183 NQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIYWLSK 242
           +QRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILS V+AACTLFLIIYWLSK
Sbjct: 181 SQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSAVIAACTLFLIIYWLSK 239

[Close]

BLAST of Lsi01G020270 vs. TrEMBL
Match: M5XL05_PRUPE (Golgi SNAP receptor complex member 1 OS=Prunus persica GN=PRUPE_ppa010682mg PE=3 SV=1)

HSP 1 Score: 416.8 bits (1070), Expect = 1.8e-113
Identity = 209/238 (87.82%), Postives = 230/238 (96.64%), Query Frame = 1


Query: 4   TDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNRSWK 63
           TD +LELQESGWEELRREARKIEGDLDVKLSSYAKLG RFTQGGYV+SGSPSVGS+RSWK
Sbjct: 3   TDSNLELQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGGYVESGSPSVGSSRSWK 62

Query: 64  SMEMEIESLLEKLLDVNDSMSRCAASAASATSINQKLARHRDILHEFTQEFKRIKGNINS 123
           SMEMEI+SLLEKLLD+NDSMSRCAASA  ATS+ QKLARHRDILHEFTQEF+RIKGNINS
Sbjct: 63  SMEMEIQSLLEKLLDINDSMSRCAASATPATSVTQKLARHRDILHEFTQEFRRIKGNINS 122

Query: 124 MREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAVLGN 183
           +REHAELL+SVRDDI+EYK+ G+MSPR+Q+LRERAAIHGS++H+DEVISQAQTTRAVLG+
Sbjct: 123 LREHAELLTSVRDDISEYKASGSMSPRMQILRERAAIHGSVSHIDEVISQAQTTRAVLGS 182

Query: 184 QRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIYWLSK 242
           QRALFGDVQGKVK LSDKFP+IRGLLGSIRRRRSRDTLIL+ V+AACTLFLIIYWLSK
Sbjct: 183 QRALFGDVQGKVKNLSDKFPIIRGLLGSIRRRRSRDTLILAAVIAACTLFLIIYWLSK 240

[Close]

BLAST of Lsi01G020270 vs. TrEMBL
Match: A0A0D2NAL4_GOSRA (Golgi SNAP receptor complex member 1 OS=Gossypium raimondii GN=B456_001G174700 PE=3 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 3.5e-112
Identity = 211/239 (88.28%), Postives = 230/239 (96.23%), Query Frame = 1


Query: 3   MTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNRSW 62
           MTD +L+LQESGWEELRREARKIEGDLDVKLSSYAKLG RFTQG   D+GSP+VGS+RSW
Sbjct: 1   MTDPNLDLQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQG---DTGSPTVGSSRSW 60

Query: 63  KSMEMEIESLLEKLLDVNDSMSRCAASAASATSINQKLARHRDILHEFTQEFKRIKGNIN 122
           KSMEMEI+SLLEKLLD+ND+MSRCAASAAS TS+ QKLARHRDILHEFTQEF+RIKGNIN
Sbjct: 61  KSMEMEIQSLLEKLLDINDAMSRCAASAASTTSVTQKLARHRDILHEFTQEFRRIKGNIN 120

Query: 123 SMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAVLG 182
           SMREHAELLSSVRDDINEYK+ G+MSPR+QLLRERAAIHGSIAH+D+VI+QAQTTRAVLG
Sbjct: 121 SMREHAELLSSVRDDINEYKASGSMSPRMQLLRERAAIHGSIAHIDDVINQAQTTRAVLG 180

Query: 183 NQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIYWLSK 242
           +QRALFGDVQGKVK+LSDKFPVIRGLLGSIRRRRSRDTLILS V+AACTLFLIIYWLSK
Sbjct: 181 SQRALFGDVQGKVKVLSDKFPVIRGLLGSIRRRRSRDTLILSAVIAACTLFLIIYWLSK 236

[Close]

BLAST of Lsi01G020270 vs. TAIR10
Match: AT2G45200.2 (AT2G45200.2 golgi snare 12)

HSP 1 Score: 391.7 bits (1005), Expect = 3.2e-109
Identity = 202/257 (78.60%), Postives = 225/257 (87.55%), Query Frame = 1


Query: 3   MTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQG---------------- 62
           MT+ SL+LQESGWEELRREARKIEGDLDVKLSSYAKLG RFTQG                
Sbjct: 1   MTESSLDLQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGDTDLVMNYEKVLKCVL 60

Query: 63  --GYVDSGSPSVGSNRSWKSMEMEIESLLEKLLDVNDSMSRCAASAASATSINQKLARHR 122
             GYVD+GSP+VGS RSWKSMEMEI+SLLEKLLD+NDSMSRCAASAA  TS+ QKLARHR
Sbjct: 61  VSGYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKLARHR 120

Query: 123 DILHEFTQEFKRIKGNINSMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSI 182
           DILHE+TQEF+RIKGNINS+REHAELLSSVRDDI+EYK+ G+MSP VQ+LRERA+IHGSI
Sbjct: 121 DILHEYTQEFRRIKGNINSLREHAELLSSVRDDISEYKASGSMSPGVQVLRERASIHGSI 180

Query: 183 AHMDEVISQAQTTRAVLGNQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILS 242
           +H+D+VI QAQ TRAVLG+QR+LF DVQGKVK L DKFPVIRGLLGSI+R+RSRDTLILS
Sbjct: 181 SHIDDVIGQAQATRAVLGSQRSLFSDVQGKVKNLGDKFPVIRGLLGSIKRKRSRDTLILS 240

[Close]

BLAST of Lsi01G020270 vs. TAIR10
Match: AT1G15880.1 (AT1G15880.1 golgi snare 11)

HSP 1 Score: 131.3 bits (329), Expect = 7.8e-31
Identity = 81/230 (35.22%), Postives = 125/230 (54.35%), Query Frame = 1


Query: 13  SGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNRSWKSMEMEIESL 72
           S W+ LR++ARKIE  LD ++ SY +L +  T+      G+ S         +E  I+ L
Sbjct: 5   SSWDALRKQARKIEAQLDEQMHSYRRLVS--TKALSKSDGNES--------DLEAGIDLL 64

Query: 73  LEKLLDVNDSMSRCAASAASATSINQKLARHRDILHEFTQEFKRIKGNINSMREHAELLS 132
           L +L  VN  M    +S  S   ++  L RH++IL + TQEF R + ++ + +EHA LL 
Sbjct: 65  LRQLQQVNAQMQAWVSSGGSEM-VSHTLTRHQEILQDLTQEFYRHRSSLRAKQEHASLLE 124

Query: 133 SVRD-DINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAVLGNQRALFGDV 192
             R+ D               L++E   I+ + A MD VISQAQ T   L  QR+ FG +
Sbjct: 125 DFREFDRTRLDLEDGYGSEQALIKEHMGINRNTAQMDGVISQAQATLGTLVFQRSTFGGI 184

Query: 193 QGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIYWLSK 242
             K+  ++ + P +  +L +I+R++S DT+ILS V A CT  + IYW++K
Sbjct: 185 NSKLSNVASRLPTVNTILAAIKRKKSMDTIILSLVAAVCTFLIFIYWITK 223

[Close]

BLAST of Lsi01G020270 vs. NCBI nr
Match: gi|778694768|ref|XP_011653862.1| (PREDICTED: Golgi SNAP receptor complex member 1-2 [Cucumis sativus])

HSP 1 Score: 456.4 bits (1173), Expect = 3.0e-125
Identity = 235/241 (97.51%), Postives = 239/241 (99.17%), Query Frame = 1


Query: 1   MAMTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNR 60
           MAMTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNR
Sbjct: 1   MAMTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNR 60

Query: 61  SWKSMEMEIESLLEKLLDVNDSMSRCAASAASATSINQKLARHRDILHEFTQEFKRIKGN 120
           SWKSMEMEI+SLLEKLLDVNDSMSRCAASA  ATSINQKLARHRDILHEFTQEFKRIKGN
Sbjct: 61  SWKSMEMEIQSLLEKLLDVNDSMSRCAASATPATSINQKLARHRDILHEFTQEFKRIKGN 120

Query: 121 INSMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAV 180
           INSMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAV
Sbjct: 121 INSMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAV 180

Query: 181 LGNQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIYWLS 240
           LGNQRALFGDVQGKVK+LSDKFPVIRGLLGSIRRRRSRDT+ILSGV+AACTLFLIIYWLS
Sbjct: 181 LGNQRALFGDVQGKVKVLSDKFPVIRGLLGSIRRRRSRDTIILSGVIAACTLFLIIYWLS 240

Query: 241 K 242
           K
Sbjct: 241 K 241

[Close]

BLAST of Lsi01G020270 vs. NCBI nr
Match: gi|659069374|ref|XP_008449502.1| (PREDICTED: Golgi SNAP receptor complex member 1-2 [Cucumis melo])

HSP 1 Score: 453.0 bits (1164), Expect = 3.3e-124
Identity = 234/241 (97.10%), Postives = 237/241 (98.34%), Query Frame = 1


Query: 1   MAMTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNR 60
           MAMTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGS SVGSNR
Sbjct: 1   MAMTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSSSVGSNR 60

Query: 61  SWKSMEMEIESLLEKLLDVNDSMSRCAASAASATSINQKLARHRDILHEFTQEFKRIKGN 120
           SWKSMEMEI+SLLEKLLDVNDSMSRCAASA  ATSINQKLARHRDILHEFTQEFKRIKGN
Sbjct: 61  SWKSMEMEIQSLLEKLLDVNDSMSRCAASATPATSINQKLARHRDILHEFTQEFKRIKGN 120

Query: 121 INSMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAV 180
           INSMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAV
Sbjct: 121 INSMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAV 180

Query: 181 LGNQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIYWLS 240
           LGNQR LFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDT+ILSGV+AACTLFLIIYWLS
Sbjct: 181 LGNQRVLFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTIILSGVIAACTLFLIIYWLS 240

Query: 241 K 242
           K
Sbjct: 241 K 241

[Close]

BLAST of Lsi01G020270 vs. NCBI nr
Match: gi|703070830|ref|XP_010088881.1| (Golgi SNAP receptor complex member 1-2 [Morus notabilis])

HSP 1 Score: 422.9 bits (1086), Expect = 3.7e-115
Identity = 214/239 (89.54%), Postives = 231/239 (96.65%), Query Frame = 1


Query: 3   MTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNRSW 62
           MTD SLELQESGWEELRREARKIEGDLDVKLSSYAKLG RFTQGGYVD+GSP+VGS+RSW
Sbjct: 1   MTDTSLELQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGGYVDTGSPTVGSSRSW 60

Query: 63  KSMEMEIESLLEKLLDVNDSMSRCAASAASATSINQKLARHRDILHEFTQEFKRIKGNIN 122
           KSMEMEI+SLLEKLLD+NDSMSRCAASA  ATS+ QKLARHRDILHEFTQEF+RIKGNIN
Sbjct: 61  KSMEMEIQSLLEKLLDINDSMSRCAASATPATSVTQKLARHRDILHEFTQEFRRIKGNIN 120

Query: 123 SMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAVLG 182
           SMREHAELL SVRDDI+EYK+ G+MSPR+QLLRERAAIHGSI+H+D+VISQAQTTRAVLG
Sbjct: 121 SMREHAELLCSVRDDISEYKASGSMSPRMQLLRERAAIHGSISHIDDVISQAQTTRAVLG 180

Query: 183 NQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIYWLSK 242
           +QRALFGDVQGKVKLLSDKFP+IRGLLGSIRRRRSRDTLILS V+AACTLFLIIYWLSK
Sbjct: 181 SQRALFGDVQGKVKLLSDKFPIIRGLLGSIRRRRSRDTLILSAVIAACTLFLIIYWLSK 239

[Close]

BLAST of Lsi01G020270 vs. NCBI nr
Match: gi|694401443|ref|XP_009375774.1| (PREDICTED: Golgi SNAP receptor complex member 1-2 [Pyrus x bretschneideri])

HSP 1 Score: 418.3 bits (1074), Expect = 9.0e-114
Identity = 211/239 (88.28%), Postives = 229/239 (95.82%), Query Frame = 1


Query: 3   MTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNRSW 62
           MTD +LELQESGWEELRREARKIEGDLDVKLSSYAKLG RFTQGGYVDSGSP V S+RSW
Sbjct: 1   MTDSNLELQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGGYVDSGSPPVSSSRSW 60

Query: 63  KSMEMEIESLLEKLLDVNDSMSRCAASAASATSINQKLARHRDILHEFTQEFKRIKGNIN 122
           KSMEMEIESLLEKLLD+NDSMSRCAASA  ATS+ QKLARHRDILHEFTQEF+RIKGNIN
Sbjct: 61  KSMEMEIESLLEKLLDINDSMSRCAASATPATSVTQKLARHRDILHEFTQEFRRIKGNIN 120

Query: 123 SMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAVLG 182
           S+REHAELL+SVRDDI+EYK+ G+MSPR+Q+LRERAAIHGS++H+DEVISQAQTTRAVLG
Sbjct: 121 SLREHAELLTSVRDDISEYKASGSMSPRMQILRERAAIHGSVSHIDEVISQAQTTRAVLG 180

Query: 183 NQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIYWLSK 242
           +QRALFGDVQGKVK LSDKFP+IRGLLGSIRRRRSRDTLILS V+AACTLFLIIYWLSK
Sbjct: 181 SQRALFGDVQGKVKNLSDKFPIIRGLLGSIRRRRSRDTLILSAVIAACTLFLIIYWLSK 239

[Close]

BLAST of Lsi01G020270 vs. NCBI nr
Match: gi|590723175|ref|XP_007052111.1| (Golgi snare 12 isoform 1 [Theobroma cacao])

HSP 1 Score: 418.3 bits (1074), Expect = 9.0e-114
Identity = 212/239 (88.70%), Postives = 230/239 (96.23%), Query Frame = 1


Query: 3   MTDQSLELQESGWEELRREARKIEGDLDVKLSSYAKLGTRFTQGGYVDSGSPSVGSNRSW 62
           MTD  L+LQESGWEELRREARKIEGDLDVKLSSYAKLG RFTQGGY+D+GSP+VGS+RSW
Sbjct: 1   MTDPILDLQESGWEELRREARKIEGDLDVKLSSYAKLGARFTQGGYLDTGSPTVGSSRSW 60

Query: 63  KSMEMEIESLLEKLLDVNDSMSRCAASAASATSINQKLARHRDILHEFTQEFKRIKGNIN 122
           KSMEMEI+SLLEKLLD ND+MSRCAASAA  TS+ QKLARHRDILHEFTQEF+RIKGNIN
Sbjct: 61  KSMEMEIQSLLEKLLDTNDAMSRCAASAAPTTSVTQKLARHRDILHEFTQEFRRIKGNIN 120

Query: 123 SMREHAELLSSVRDDINEYKSPGTMSPRVQLLRERAAIHGSIAHMDEVISQAQTTRAVLG 182
           SMREHAELLSSVRDDI+EYK+ G+MSPR+QLLRERAAIHGSIAH+D+VI+QAQTTRAVLG
Sbjct: 121 SMREHAELLSSVRDDISEYKASGSMSPRMQLLRERAAIHGSIAHIDDVINQAQTTRAVLG 180

Query: 183 NQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSGVVAACTLFLIIYWLSK 242
           +QRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILS V+AACTLFLIIYWLSK
Sbjct: 181 SQRALFGDVQGKVKLLSDKFPVIRGLLGSIRRRRSRDTLILSAVIAACTLFLIIYWLSK 239

The following BLAST results are available for this feature:

BLAST of Lsi01G020270 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GOS12_ARATH	5.7e-108	78.60	Golgi SNAP receptor complex member 1-2 OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=...	[more]
GOSR1_MOUSE	4.9e-35	36.40	Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1 SV=2	[more]
GOSR1_RAT	4.1e-34	35.98	Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1 PE=1 SV=1	[more]
GOSR1_CRIGR	4.1e-34	35.98	Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1 PE=1 SV=1	[more]
GOSR1_PONAB	4.1e-34	37.13	Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2 SV=1	[more]

BLAST of Lsi01G020270 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L102_CUCSA	2.1e-125	97.51	Golgi SNAP receptor complex member 1 OS=Cucumis sativus GN=Csa_4G438030 PE=3 SV=...	[more]
W9QP30_9ROSA	2.6e-115	89.54	Golgi SNAP receptor complex member 1 OS=Morus notabilis GN=L484_020869 PE=3 SV=1	[more]
A0A061E1Z0_THECC	6.3e-114	88.70	Golgi SNAP receptor complex member 1 OS=Theobroma cacao GN=TCM_005547 PE=3 SV=1	[more]
M5XL05_PRUPE	1.8e-113	87.82	Golgi SNAP receptor complex member 1 OS=Prunus persica GN=PRUPE_ppa010682mg PE=3...	[more]
A0A0D2NAL4_GOSRA	3.5e-112	88.28	Golgi SNAP receptor complex member 1 OS=Gossypium raimondii GN=B456_001G174700 P...	[more]

BLAST of Lsi01G020270 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45200.2	3.2e-109	78.60	golgi snare 12	[more]
AT1G15880.1	7.8e-31	35.22	golgi snare 11	[more]

BLAST of Lsi01G020270 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778694768\|ref\|XP_011653862.1\|	3.0e-125	97.51	PREDICTED: Golgi SNAP receptor complex member 1-2 [Cucumis sativus]	[more]
gi\|659069374\|ref\|XP_008449502.1\|	3.3e-124	97.10	PREDICTED: Golgi SNAP receptor complex member 1-2 [Cucumis melo]	[more]
gi\|703070830\|ref\|XP_010088881.1\|	3.7e-115	89.54	Golgi SNAP receptor complex member 1-2 [Morus notabilis]	[more]
gi\|694401443\|ref\|XP_009375774.1\|	9.0e-114	88.28	PREDICTED: Golgi SNAP receptor complex member 1-2 [Pyrus x bretschneideri]	[more]
gi\|590723175\|ref\|XP_007052111.1\|	9.0e-114	88.70	Golgi snare 12 isoform 1 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane
GO:0005801	cis-Golgi network
GO:0000139	Golgi membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0006888	ER to Golgi vesicle-mediated transport

Vocabulary: **INTERPRO**
Term	Definition
IPR023601	Golgi_SNAP_su1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006888	ER to Golgi vesicle-mediated transport
biological_process	GO:0015031	protein transport
cellular_component	GO:0005801	cis-Golgi network
cellular_component	GO:0000139	Golgi membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005484	SNAP receptor activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi01G020270.1	Lsi01G020270.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023601	Golgi SNAP receptor complex, subunit 1	PIR	PIRSF027109	Golgi_SNARE	coord: 2..240 score: 2.0
IPR023601	Golgi SNAP receptor complex, subunit 1	PANTHER	PTHR21094	GOS-28 SNARE- RELATED	coord: 1..241 score: 1.9E
None	No IPR available	PFAM	PF12352	V-SNARE_C	coord: 152..216 score: 3.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi01G020270	Csa4G438030	Cucumber (Chinese Long) v2	culsiB251
Lsi01G020270	CSPI04G19450	Wild cucumber (PI 183967)	cpilsiB249
Lsi01G020270	Cucsa.169910	Cucumber (Gy14) v1	cgylsiB283
Lsi01G020270	CmaCh07G013800	Cucurbita maxima (Rimu)	cmalsiB789
Lsi01G020270	CmoCh07G014250	Cucurbita moschata (Rifu)	cmolsiB782
Lsi01G020270	Cla006108	Watermelon (97103) v1	lsiwmB149
Lsi01G020270	MELO3C003263	Melon (DHL92) v3.5.1	lsimeB153
Lsi01G020270	ClCG04G003190	Watermelon (Charleston Gray)	lsiwcgB138
Lsi01G020270	MELO3C003263.2	Melon (DHL92) v3.6.1	lsimedB160
Lsi01G020270	Cla97C04G070380	Watermelon (97103) v2	lsiwmbB136
Lsi01G020270	Bhi03G002293	Wax gourd	lsiwgoB174
Lsi01G020270	Cp4.1LG19g00010	Cucurbita pepo (Zucchini)	cpelsiB399
Lsi01G020270	CsGy4G018340	Cucumber (Gy14) v2	cgyblsiB238
Lsi01G020270	Carg21085	Silver-seed gourd	carlsiB430
Lsi01G020270	CsaV3_4G029820	Cucumber (Chinese Long) v3	cuclsiB274

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi01G020270	Silver-seed gourd	carlsiB429
Lsi01G020270	Silver-seed gourd	carlsiB470
Lsi01G020270	Wax gourd	lsiwgoB173
Lsi01G020270	Cucurbita maxima (Rimu)	cmalsiB599
Lsi01G020270	Cucurbita maxima (Rimu)	cmalsiB795
Lsi01G020270	Cucurbita moschata (Rifu)	cmolsiB589
Lsi01G020270	Cucurbita moschata (Rifu)	cmolsiB775
Lsi01G020270	Cucurbita pepo (Zucchini)	cpelsiB050
Lsi01G020270	Cucurbita pepo (Zucchini)	cpelsiB395