Lsi05G001920 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.AAAGAGCCTATAACTTTAGAAACTATAAAAGGACACAATAATAATCTTATTTCCATTAACATAAAAAAAAACAAGCTAATTAGAGAGAGAGATAAAGAAATGGGTGAGGGAAGAAGTGGTTCAATGGTGGGAATAATAGTGGTGGTTTGCTTGTTGTTGGTGCAACAATTAGAGATGAGTAATGCAGATGCAGCAATTTACAGTGTTGGAGATGAGCTTGGATGGACCTTTAATGTCTCCTCTTGGCCTACTGGAAAGAACTTTCATGCTGGGGATATTCTTGGTATTTTCTTTTTCTTTTCTTTTTTTTTTTTTTTTGATTTTTCATCCTAATTAATATTGGGAGTTTCATGTTCTTCTTCATATTCTTTCCTTGAAAATATTGCATAGTTCTTTTTTTTGGCATTTGTTTTGTTAGTAAACATTCGGGCCTATTGGAAAAGTTTAAGTTATTAATGTCGATGAATATTTCTAAAAATATTTTTATGCTTTTAGACCGATTAAAATATTTATTATTTATATTATATTTACATTTATTTTATTGTGTTGTTTATGGATTTCTTTTTATGAGAAAATATTGATTCCCTATGAAAATGTAGAAATGGTGATGAAAATGTTTGATATGTTGACAAAAAAATAAATACCATAGCTCTTTGTGAACTTTACTTATTTAGTTCTTTCTATATATATTGTCAATCTTAGTGGATAAAGACACTAATTATTATCTTAAAAGTTGATGGTTTAATCTCCACTTCAACAATTGTTGAGCTAAAAAAAAAAATCTTTATACTTTTATGTTAGCCTCATCAATGGACTTGAAACCCAATGGTCGACTCAAGCCCAGCCCGTGCTCGATCCAATTAGCTCAACCCAAATTTTACATTTAACTAGTGCCCAACCTATTTATTCATTGGATTGAATATGGAGAAATTTTCCATACTCCCTCTTATATTTATTGAATGCAATGTCAGCATGCTCGTTGACATTTATAAAAATCAATTTATAGTAGGAACAAAATGAGTATAGAAGTAAGGGAGTAGTAAATATTTGATTAAAGCATTTGTTTTGTACGTTAAATGCAGCATTCAACTACACTCCATCAGCACACAATGTAGTAGTTGTTGACAAAGTGGGTTACAATTGGTGTTTGATTAATCCAATAGAAGCCACCGTTCATCACTCAGGAAAGGAACAAATCAAGCTTGTTGAAGGCTTAAACTATTTTATCTGCAGCCTCCCAGGCCATTGCCAAATGGGAATGAAACTTGCCATTACTGCCACTTAATCGTCATTAATTATTAATAATCTTACTTAAAGGAGTTTTTAAAACTTTAGCTTTAATTATATTTTATCAAAGTCATGAACCTTGATGTGCCAATTATCCTATGATTTTGCACATCTTTCAATAAAACACATTATGTACCTCTTGTATGTGTTTTTCATATTTATGTCTTTTATGTTATGTGTGTGACACTGTTTAATTAGCAGAGAGTTATATGTAATAAATTAGTCTATTTTTTCCTCATTATTATTGTTCTTCCTTATGTATTGCACTCCTTGAATTTAAATAAGTTATTTTACC AAAGAGCCTATAACTTTAGAAACTATAAAAGGACACAATAATAATCTTATTTCCATTAACATAAAAAAAAACAAGCTAATTAGAGAGAGAGATAAAGAAATGGGTGAGGGAAGAAGTGGTTCAATGGTGGGAATAATAGTGGTGGTTTGCTTGTTGTTGGTGCAACAATTAGAGATGAGTAATGCAGATGCAGCAATTTACAGTGTTGGAGATGAGCTTGGATGGACCTTTAATGTCTCCTCTTGGCCTACTGGAAAGAACTTTCATGCTGGGGATATTCTTGCATTCAACTACACTCCATCAGCACACAATGTAGTAGTTGTTGACAAAGTGGGTTACAATTGGTGTTTGATTAATCCAATAGAAGCCACCGTTCATCACTCAGGAAAGGAACAAATCAAGCTTGTTGAAGGCTTAAACTATTTTATCTGCAGCCTCCCAGGCCATTGCCAAATGGGAATGAAACTTGCCATTACTGCCACTTAATCGTCATTAATTATTAATAATCTTACTTAAAGGAGTTTTTAAAACTTTAGCTTTAATTATATTTTATCAAAGTCATGAACCTTGATGTGCCAATTATCCTATGATTTTGCACATCTTTCAATAAAACACATTATGTACCTCTTGTATGTGTTTTTCATATTTATGTCTTTTATGTTATGTGTGTGACACTGTTTAATTAGCAGAGAGTTATATGTAATAAATTAGTCTATTTTTTCCTCATTATTATTGTTCTTCCTTATGTATTGCACTCCTTGAATTTAAATAAGTTATTTTACC ATGGGTGAGGGAAGAAGTGGTTCAATGGTGGGAATAATAGTGGTGGTTTGCTTGTTGTTGGTGCAACAATTAGAGATGAGTAATGCAGATGCAGCAATTTACAGTGTTGGAGATGAGCTTGGATGGACCTTTAATGTCTCCTCTTGGCCTACTGGAAAGAACTTTCATGCTGGGGATATTCTTGCATTCAACTACACTCCATCAGCACACAATGTAGTAGTTGTTGACAAAGTGGGTTACAATTGGTGTTTGATTAATCCAATAGAAGCCACCGTTCATCACTCAGGAAAGGAACAAATCAAGCTTGTTGAAGGCTTAAACTATTTTATCTGCAGCCTCCCAGGCCATTGCCAAATGGGAATGAAACTTGCCATTACTGCCACTTAA MGEGRSGSMVGIIVVVCLLLVQQLEMSNADAAIYSVGDELGWTFNVSSWPTGKNFHAGDILAFNYTPSAHNVVVVDKVGYNWCLINPIEATVHHSGKEQIKLVEGLNYFICSLPGHCQMGMKLAITAT
BLAST of Lsi05G001920 vs. Swiss-Prot
Match: BABL_CUCSA (Basic blue protein OS=Cucumis sativus PE=1 SV=1) HSP 1 Score: 125.2 bits (313), Expect = 5.3e-28 Identity = 56/96 (58.33%), Postives = 69/96 (71.88%), Query Frame = 1
BLAST of Lsi05G001920 vs. Swiss-Prot
Match: BABL_LILLO (Chemocyanin OS=Lilium longiflorum PE=1 SV=1) HSP 1 Score: 123.6 bits (309), Expect = 1.5e-27 Identity = 60/127 (47.24%), Postives = 79/127 (62.20%), Query Frame = 1
BLAST of Lsi05G001920 vs. Swiss-Prot
Match: BABL_ARATH (Basic blue protein OS=Arabidopsis thaliana GN=ARPN PE=2 SV=2) HSP 1 Score: 119.4 bits (298), Expect = 2.9e-26 Identity = 58/126 (46.03%), Postives = 74/126 (58.73%), Query Frame = 1
BLAST of Lsi05G001920 vs. Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 1.1e-14 Identity = 39/100 (39.00%), Postives = 55/100 (55.00%), Query Frame = 1
BLAST of Lsi05G001920 vs. Swiss-Prot
Match: BCB2_ARATH (Uclacyanin-2 OS=Arabidopsis thaliana GN=At2g44790 PE=1 SV=1) HSP 1 Score: 80.9 bits (198), Expect = 1.1e-14 Identity = 55/124 (44.35%), Postives = 70/124 (56.45%), Query Frame = 1
BLAST of Lsi05G001920 vs. TrEMBL
Match: A0A0A0L6J3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G214590 PE=4 SV=1) HSP 1 Score: 207.2 bits (526), Expect = 1.2e-50 Identity = 102/129 (79.07%), Postives = 111/129 (86.05%), Query Frame = 1
BLAST of Lsi05G001920 vs. TrEMBL
Match: A0A0A0LC13_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G215590 PE=4 SV=1) HSP 1 Score: 154.8 bits (390), Expect = 6.9e-35 Identity = 73/127 (57.48%), Postives = 96/127 (75.59%), Query Frame = 1
BLAST of Lsi05G001920 vs. TrEMBL
Match: M5Y261_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021383mg PE=4 SV=1) HSP 1 Score: 153.3 bits (386), Expect = 2.0e-34 Identity = 72/127 (56.69%), Postives = 93/127 (73.23%), Query Frame = 1
BLAST of Lsi05G001920 vs. TrEMBL
Match: D7T037_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g01140 PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 1.3e-33 Identity = 69/128 (53.91%), Postives = 90/128 (70.31%), Query Frame = 1
BLAST of Lsi05G001920 vs. TrEMBL
Match: F6H924_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g01150 PE=4 SV=1) HSP 1 Score: 148.3 bits (373), Expect = 6.4e-33 Identity = 70/127 (55.12%), Postives = 88/127 (69.29%), Query Frame = 1
BLAST of Lsi05G001920 vs. TAIR10
Match: AT2G02850.1 (AT2G02850.1 plantacyanin) HSP 1 Score: 119.4 bits (298), Expect = 1.6e-27 Identity = 58/126 (46.03%), Postives = 74/126 (58.73%), Query Frame = 1
BLAST of Lsi05G001920 vs. TAIR10
Match: AT2G44790.1 (AT2G44790.1 uclacyanin 2) HSP 1 Score: 80.9 bits (198), Expect = 6.4e-16 Identity = 55/124 (44.35%), Postives = 70/124 (56.45%), Query Frame = 1
BLAST of Lsi05G001920 vs. TAIR10
Match: AT3G60270.1 (AT3G60270.1 Cupredoxin superfamily protein) HSP 1 Score: 76.3 bits (186), Expect = 1.6e-14 Identity = 48/123 (39.02%), Postives = 67/123 (54.47%), Query Frame = 1
BLAST of Lsi05G001920 vs. TAIR10
Match: AT3G60280.1 (AT3G60280.1 uclacyanin 3) HSP 1 Score: 72.4 bits (176), Expect = 2.3e-13 Identity = 45/99 (45.45%), Postives = 58/99 (58.59%), Query Frame = 1
BLAST of Lsi05G001920 vs. TAIR10
Match: AT2G31050.1 (AT2G31050.1 Cupredoxin superfamily protein) HSP 1 Score: 69.3 bits (168), Expect = 1.9e-12 Identity = 38/111 (34.23%), Postives = 48/111 (43.24%), Query Frame = 1
BLAST of Lsi05G001920 vs. NCBI nr
Match: gi|659112156|ref|XP_008456091.1| (PREDICTED: basic blue protein-like [Cucumis melo]) HSP 1 Score: 218.0 bits (554), Expect = 9.5e-54 Identity = 103/128 (80.47%), Postives = 110/128 (85.94%), Query Frame = 1
BLAST of Lsi05G001920 vs. NCBI nr
Match: gi|449464514|ref|XP_004149974.1| (PREDICTED: basic blue protein-like [Cucumis sativus]) HSP 1 Score: 207.2 bits (526), Expect = 1.7e-50 Identity = 102/129 (79.07%), Postives = 111/129 (86.05%), Query Frame = 1
BLAST of Lsi05G001920 vs. NCBI nr
Match: gi|659131262|ref|XP_008465594.1| (PREDICTED: basic blue protein-like [Cucumis melo]) HSP 1 Score: 155.6 bits (392), Expect = 5.8e-35 Identity = 74/127 (58.27%), Postives = 96/127 (75.59%), Query Frame = 1
BLAST of Lsi05G001920 vs. NCBI nr
Match: gi|449464494|ref|XP_004149964.1| (PREDICTED: basic blue protein-like [Cucumis sativus]) HSP 1 Score: 154.8 bits (390), Expect = 9.9e-35 Identity = 73/127 (57.48%), Postives = 96/127 (75.59%), Query Frame = 1
BLAST of Lsi05G001920 vs. NCBI nr
Match: gi|596296450|ref|XP_007227174.1| (hypothetical protein PRUPE_ppa021383mg [Prunus persica]) HSP 1 Score: 153.3 bits (386), Expect = 2.9e-34 Identity = 72/127 (56.69%), Postives = 93/127 (73.23%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |