Lsi05G003360 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi05G003360
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionPhotosystem II CP43 reaction center protein
Locationchr05 : 4255151 .. 4260210 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACATGTTAGAAGTGAACTTCAAATGTGAGGGGTCTGAAACTGAAGATATTTATAAAGTGCAGATCACTACCTTTGAATCAAACTCCTGAACTTCCTCTACCAATTTAATGCATGATTCCCAACACATGGGTAGAAGATCAGTAAATTTTTCTTCCGAAAAGTTTGCATCTTCAACATGTAAACACAAGGACCGACAAGCTGCCAGCTAAGTCAAGGAACGTATGTTTAACTTCAGTTGTTAATAACGGAAGGGTTGTGTCAAAATTAAAGGGAAAACAAACAAGAAAAATAATGTTACATAAATATGATGGTTTGAATCATACCTGAACAGACAAATCTTTATCCTGAAGCAGCCGGATCAAAGCACAATACACTTGTCGTTTTGTATCATCTTTAATCTATTACGAAGTAACAAAAGCCTCAATGTCCATCATCTATTAAAAATTGGGATATACTAGCATTGCAGAAAAAGCAAAATTATCTTCACAAACTGATAATCAATGATATGCTAAAGCCTTTGAAAGAGCTCATGCAGATAACATAATGGTTCTATTGATAAAGTTCCAAAAACTGAACATTTCAGTTTTCTAACAAAATTTCTGTACCTTTTTACCTTTCTGTGATATGGGAAATTTCTGAATGAACTACAATTTTGTATATTCTGCTTAACAACAAAGAGAATACATACAACGTTTTACATACTCTATCCACAACGCCCCTGCCCCCCCCAAGAAAGAAAGAACAATCCAAAGATTTTTCAAGATTTTGCAAGAATGGATTATTGCGGAGCAAAGAAGATGTCCAAGAAAAAAAAATCAGCAGTTCTTATAGGCAAGAAAATCAATTTTACTTCCAAAAACAATGTTGGGATTTTGACTCAAGTGATTCAGATGAAAATTTTCAACATACTAATTTTGCCCATGCTCGATTTTCTCAAAGAACCTATCATTATCGACATTGGAAATTTGATTCTAGTGATTCTAGTGACTTTGAAGACGTTTCTAAGTCAATTTGGGACGGAATTAGAAAGCGACAATATCAAAAAAGGGCTCAACGATCCAATCAAACCCATTTTTCAAGAAATCAATGTAAAGATTGGGAGTTAGATGAATTAAAGAATCATCAAGAATGGATTTTTACAGCCCAAGAAGAACGTTCAAGACTCGAAATTATTCTTTTGGTTATGAAACACGATCAAGAAAGGTTGATTCAAAAAAATCAATGGATGAGTTCTATACCCACTACGAGGTTGAAATATATCCAAGAATCCAACAAAATGACTACTTTGATCCCATAGCATTAGAGGAAATAAAGAAACCAACAAAAAGAAATCCAACATTCATTAGGAAAAATGACTCAATATATTGATCATTTATCAATTCATTTGCAAAAGTTCAAGAACTTAATTAGAATACAAAGAATTGCAAAATAAATAAACACCAATAGGCCCAACAAAGGAAAATAGCATAAAAGGAAAATACAAGAAAGGAAAATATAATTAAGCCATAATTTTCTTTAACACCCTCCCTCAAACTCAAGGTGGTAGACTTGAGTTTGTGAAGCGCTGAGAGAAACCAATAACAGAAACTGAAGAAAACTTCCGAATCAAATCACGATATATCTGGGTTGGAAACAATGAACCTATTCGAAGTGGCTCATTTCGTACCGGAGAAGCCCATGTATGAACAAGGATTAATTTTACTTCCCCACCTAGCTACGTTAGGTTGGGGGTAGGTCCTGGTGGGGAAGTTATAGATACATTTCCTTACTTTGTGTCTGGAGTACTTCACTTAATTTCATCCGCAGTATTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCAAGACCCTTGAAGAATCTTTTCCATTCTTCAGTTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTAGGTATTCACTTAATTTTGTTAGGTATAGGTGCTTTTCTTTTAGTATTCAAAGCTCTTTATTTTGGGGGCGTATATAATATCTGGGCTCCGAGGGGAGATGTAAGAAAAATTACCAACTTGACCCTTAGCCCAAGTGTTATATTTGGTTATTTACTAAAATCTCCTTTTGGTGGAGAAGGATGGATCGAAAACATAGATCCACAAAGAACTTCTAAGTTGGAGACAAATACCCACAAAGCACTTTTGAACCAGAAATAGAGACCCACGAAAATTTTTTGGACTGGAAACAGAGATCTACATAGAGATCTGAAACAGAACCCCCGAACGAACGATTTGTAAACGGAATAGAGACCTACAAACTCAAATCTGAAAACAAAACCGAGACCCACAAATGTAGATCTAAAAACAAAACAAAATCGATGACAGAGGCAACGACGGATGAACAGATCAGGAACAGTGTAACGGCGACGGAACTTCATGGATCTGCCTCCATCGACCGACCATCAATGGAGGCAAAGATCGAAAAATATAAAACCCTAAGACTTAGGCTCTGATACCATGTGAAATTTGTATATTATATTCTTGAATAATAACTTAATTAGAATACAAAGAATTGTAAAATGAATAGACACCAATAGGCCCAACAGAGAAAAATAGCATAAAAGGAAAATATAATTCAGCTATAATTTTCTTTAACGTAGTTAACGGAGATGATTGGAACAAAAATCATGCGAATAGTAGAAGAAAAAGAAGAAAAAGAAGAATTTGAAGATGTTAATTCAAAAATTGTCTCAAGTGAAAAAGAAAAATCCAACGAAGAAAATGGAATAAAGGTATCGAACACCGAGCAAGAATCGAGCAAGAAAAATGACACATTGATTGCATTGGAAATGGATCACCAAACTGTCGAAGAACTTGAAGCGAATGATAAAGAAGACATAATTCTTGAACGGTTCTCTTTGGAAGGTGATATTTTAGTGATTGGTCCTTTGAATACGATTTTCAATGAGTTTGAAGGAAACATCTTTCTTGGGTTTATGGCCAATGGAGAAATTCATCTTTTGGTGGCAATATTGGATTTTGTCTCGAATTTATCCCTTTGATCATAATATTTTTGTTCAAAATGTAGGAGGTTGGTTTGGTCATAATCCGTTGAACAAGTTTATTTCATTTCTTGTTTGCTTCATAATTTTTTTCTTTTTAAAACTTGAGGACGAGTTTTCTTTTTGGAGGGGTAGATGATGTGAGAAGAATAGGGGTTAATTGGGTAATTAGGTAATATTTTAGGTTAATTCCCTTTTTACCCCCACTTGTAATAAAACTCTATAAATAGGAACCTTCTCCTATTGCATCAAACACAATATTCATTCTAATGAAAGCTCCACATTCTTGATTCTTGGAGAGATTTCTCCTTTTATCTCTTTAGGCCACATCAACATACAAAAAGATAAGCCCTCCAAAGGAAATCGTACTCAAGGAAAGGGACCCAACTATGCAAAATAGAACATATAGAATAATTATAAAAGTTTTTTGAAGTTGAAGCCCAAAGAAAAACATGAAGTCTATCGAGGAACCACCATCCAATGGATCACTCTCCAAACCTCTAAACGTTCTACTATTCCTCTCTCCCCATCATTCCCACAAAATAGCACACCCTCCAACAAGCCATAAAAATCGATGCTTTTCACAAAAAGGCAGATTGAGGAAGAACGCCTTGATCATATCATTAGTAACCCTATGACAAGAAAAGCCTGAAATCGAAAGTCTGGAAGTAGCTACTCCAAACAAATCTCGCAAACTCATACCTCCAAAATATATGATTTAGATCCGCTTCGAATAGAGAATATAATAAAATGGGCCAATTAACAAAAGTAACATCCTTGAGAGCTGATCCAGAGTGTTAGCTCAACCATGTAAAACCTAAAGAACTTAACCTTCTTTGGAATTTTTAATTCTTAAAGCAGAAAAAACAAACTAATGGGAGAAAGGTCCATTAAACAACAAAAGAAGGAATTACAAGAAAAAGCACCCGAAGGGTTAGGACTCCAAACATGAAACTCTCTTCTTCCCAACCTAAAGTCAAACTCCCCTATCAAAGACAAGAAAGAGGAAACATTCACCGTAGTCAATGAACGACATAAGCCAAAATAAAAAGAAGCAGACTCCCAACCAAACCAGGAAGTCAGCCACCAAACAATTTTTTAAGGACATATGATAGGTACAAAGAAATGCATGTAGAAGGGTCTATCCCCCACCCACTGAACCTCCTGAAAATTCCTTCCCCACCCTTACCACACAATGGAATGAAGGGAGCTCAAAAGAGACATCTTTCCAGAGATTTCAATATGTGCCTTTAACACCATCTAACCGCCACTAAAAGGGTGAGCATCATACTTGCTAACAATAATCCTATGTCAAAGAGTCTTAGGCTCTAGGGGAAAACACCAATGTCATTTTTTTTAAAGGATATAAGACTTTTCATTAAGTAAATGAAAATAGACTAATGTTCAAAATACATCGCAATAAAGACAAAACAAAGTAAGGACTTTAAAACAAATAAAGATACAAACTGCAAAAATAATAAGAAAGAAAACCAAGACAAAAAAGACTTGCTAAACGGAAAAATGAAAGCATCCTAGAAGCAAGAGAAATCTTGATTAGAAGATCCACCAAAAAGCTCGGGTAACGATCACCAATAAGAAACTTTGAAAAGTGCATAGAAAATTTGACCTTGAACCATAAATAAGCAAAAGACTTTTAAGTGTAATCCATAACGTGCACCTACTAATCCTTAGCTTTCTTTTAGCTCTTTGTATATCAATATTGTACTTTGAACTTTGACTCATTTCATTATATCAATGAAGTGGTTGGTTTCCTTTTCAAAAAAAAAAAAAAAATGTAATCCAAAATAGGATATTAATCTTCTTAGGACACTTTAACTTCCTCAAGGCTGCAAATAAGGAGAAGAATCATCACTTGAATAAACTTTGCAGATGACAAAAACTTCTGGAGGTCCACTAAAAACTGTCTTTCGATAAATGGCACCAATATAAGCTCTGTGATGCTACTAGAAGTTTCCAGAAAGAGGACCTCAAACCAAGAAACTGCTTCAAAGAAAACAATCATAATCCACTGA

mRNA sequence

ATGGAACATACAAATCTTTATCCTGAAGCAGCCGGATCAAAGCACAATACACTTGTCGTTTTCTACGTTAGGTTGGGGGTAGGTCCTGGTGGGGAAGTTATAGATACATTTCCTTACTTTGTGTCTGGAGTACTTCACTTAATTTCATCCGCAGTATTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCAAGACCCTTGAAGAATCTTTTCCATTCTTCAGTTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTAGATGACAAAAACTTCTGGAGGTCCACTAAAAACTGTCTTTCGATAAATGGCACCAATATAAGCTCTGTGATGCTACTAGAAGTTTCCAGAAAGAGGACCTCAAACCAAGAAACTGCTTCAAAGAAAACAATCATAATCCACTGA

Coding sequence (CDS)

ATGGAACATACAAATCTTTATCCTGAAGCAGCCGGATCAAAGCACAATACACTTGTCGTTTTCTACGTTAGGTTGGGGGTAGGTCCTGGTGGGGAAGTTATAGATACATTTCCTTACTTTGTGTCTGGAGTACTTCACTTAATTTCATCCGCAGTATTGGGTTTTGGCGGTATTTATCATGCACTTCTGGGACCCAAGACCCTTGAAGAATCTTTTCCATTCTTCAGTTATGTGTGGAAAGATAGAAATAAAATGACTACCATTTTAGATGACAAAAACTTCTGGAGGTCCACTAAAAACTGTCTTTCGATAAATGGCACCAATATAAGCTCTGTGATGCTACTAGAAGTTTCCAGAAAGAGGACCTCAAACCAAGAAACTGCTTCAAAGAAAACAATCATAATCCACTGA

Protein sequence

MEHTNLYPEAAGSKHNTLVVFYVRLGVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKMTTILDDKNFWRSTKNCLSINGTNISSVMLLEVSRKRTSNQETASKKTIIIH
Homology
[Close]
BLAST of Lsi05G003360 vs. Swiss-Prot
Match: PSBC_ACOCL (Photosystem II CP43 reaction center protein OS=Acorus calamus GN=psbC PE=3 SV=2)

HSP 1 Score: 132.5 bits (332), Expect = 3.5e-30
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 98  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 157

Query: 86  TTIL 90
           TTIL
Sbjct: 158 TTIL 161

[Close]
BLAST of Lsi05G003360 vs. Swiss-Prot
Match: PSBC_GUIAB (Photosystem II CP43 reaction center protein OS=Guizotia abyssinica GN=psbC PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.5e-30
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 98  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 157

Query: 86  TTIL 90
           TTIL
Sbjct: 158 TTIL 161

[Close]
BLAST of Lsi05G003360 vs. Swiss-Prot
Match: PSBC_PIPCE (Photosystem II CP43 reaction center protein OS=Piper cenocladum GN=psbC PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.5e-30
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 98  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 157

Query: 86  TTIL 90
           TTIL
Sbjct: 158 TTIL 161

[Close]
BLAST of Lsi05G003360 vs. Swiss-Prot
Match: PSBC_GOSHI (Photosystem II CP43 reaction center protein OS=Gossypium hirsutum GN=psbC PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.5e-30
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 98  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 157

Query: 86  TTIL 90
           TTIL
Sbjct: 158 TTIL 161

[Close]
BLAST of Lsi05G003360 vs. Swiss-Prot
Match: PSBC_GOSBA (Photosystem II CP43 reaction center protein OS=Gossypium barbadense GN=psbC PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.5e-30
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 86  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 145

Query: 86  TTIL 90
           TTIL
Sbjct: 146 TTIL 149

[Close]
BLAST of Lsi05G003360 vs. TrEMBL
Match: M1FNR0_SALMI (Photosystem II CP43 reaction center protein OS=Salvia miltiorrhiza GN=psbC PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.9e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 98  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 157

Query: 86  TTIL 90
           TTIL
Sbjct: 158 TTIL 161

[Close]
BLAST of Lsi05G003360 vs. TrEMBL
Match: V9ZA60_9MAGN (Photosystem II CP43 reaction center protein (Fragment) OS=Exbucklandia populnea GN=psbC PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.9e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 74  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 133

Query: 86  TTIL 90
           TTIL
Sbjct: 134 TTIL 137

[Close]
BLAST of Lsi05G003360 vs. TrEMBL
Match: A0A139ZMP7_9SOLA (Photosystem II CP43 reaction center protein OS=Iochroma australe GN=psbC PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.9e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 98  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 157

Query: 86  TTIL 90
           TTIL
Sbjct: 158 TTIL 161

[Close]
BLAST of Lsi05G003360 vs. TrEMBL
Match: A0A0K0M3J2_9ASTR (Photosystem II CP43 reaction center protein OS=Senecio integerrimus GN=psbC PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.9e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 98  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 157

Query: 86  TTIL 90
           TTIL
Sbjct: 158 TTIL 161

[Close]
BLAST of Lsi05G003360 vs. TrEMBL
Match: Q3ZPN6_9ASPA (Photosystem II CP43 reaction center protein (Fragment) OS=Duckeella adolphii GN=psbC PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 3.9e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 98  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 157

Query: 86  TTIL 90
           TTIL
Sbjct: 158 TTIL 161

[Close]
BLAST of Lsi05G003360 vs. TAIR10
Match: ATCG00280.1 (ATCG00280.1 photosystem II reaction center protein C)

HSP 1 Score: 132.5 bits (332), Expect = 2.0e-31
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 98  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 157

Query: 86  TTIL 90
           TTIL
Sbjct: 158 TTIL 161

[Close]
BLAST of Lsi05G003360 vs. NCBI nr
Match: gi|59859240|gb|AAX09389.1| (PsbC, partial (chloroplast) [Duckeella adolphii])

HSP 1 Score: 132.5 bits (332), Expect = 5.6e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 98  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 157

Query: 86  TTIL 90
           TTIL
Sbjct: 158 TTIL 161

[Close]
BLAST of Lsi05G003360 vs. NCBI nr
Match: gi|641803807|gb|AIA76958.1| (photosystem II CP43 chlorophyll apoprotein (chloroplast) (chloroplast) [Capsicum annuum var. glabriusculum])

HSP 1 Score: 132.5 bits (332), Expect = 5.6e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 98  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 157

Query: 86  TTIL 90
           TTIL
Sbjct: 158 TTIL 161

[Close]
BLAST of Lsi05G003360 vs. NCBI nr
Match: gi|459014489|ref|YP_007507107.1| (photosystem II 44 kDa protein (chloroplast) [Salvia miltiorrhiza])

HSP 1 Score: 132.5 bits (332), Expect = 5.6e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 98  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 157

Query: 86  TTIL 90
           TTIL
Sbjct: 158 TTIL 161

[Close]
BLAST of Lsi05G003360 vs. NCBI nr
Match: gi|45386409|gb|AAS60054.1| (photosystem II CP43 protein, partial (chloroplast) [Kingia australis])

HSP 1 Score: 132.5 bits (332), Expect = 5.6e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 98  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 157

Query: 86  TTIL 90
           TTIL
Sbjct: 158 TTIL 161

[Close]
BLAST of Lsi05G003360 vs. NCBI nr
Match: gi|697964860|ref|YP_009059515.1| (photosystem II CP43 chlorophyll apoprotein [Iris gatesii])

HSP 1 Score: 132.5 bits (332), Expect = 5.6e-28
Identity = 62/64 (96.88%), Postives = 63/64 (98.44%), Query Frame = 1 

Query: 26  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPKTLEESFPFFSYVWKDRNKM 85
           GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGP+TLEESFPFF YVWKDRNKM
Sbjct: 98  GVGPGGEVIDTFPYFVSGVLHLISSAVLGFGGIYHALLGPETLEESFPFFGYVWKDRNKM 157

Query: 86  TTIL 90
           TTIL
Sbjct: 158 TTIL 161

The following BLAST results are available for this feature:
BLAST of Lsi05G003360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBC_ACOCL3.5e-3096.88Photosystem II CP43 reaction center protein OS=Acorus calamus GN=psbC PE=3 SV=2[more]
PSBC_GUIAB3.5e-3096.88Photosystem II CP43 reaction center protein OS=Guizotia abyssinica GN=psbC PE=3 ... [more]
PSBC_PIPCE3.5e-3096.88Photosystem II CP43 reaction center protein OS=Piper cenocladum GN=psbC PE=3 SV=... [more]
PSBC_GOSHI3.5e-3096.88Photosystem II CP43 reaction center protein OS=Gossypium hirsutum GN=psbC PE=3 S... [more]
PSBC_GOSBA3.5e-3096.88Photosystem II CP43 reaction center protein OS=Gossypium barbadense GN=psbC PE=3... [more]
BLAST of Lsi05G003360 vs. TrEMBL
Match NameE-valueIdentityDescription
M1FNR0_SALMI3.9e-2896.88Photosystem II CP43 reaction center protein OS=Salvia miltiorrhiza GN=psbC PE=3 ... [more]
V9ZA60_9MAGN3.9e-2896.88Photosystem II CP43 reaction center protein (Fragment) OS=Exbucklandia populnea ... [more]
A0A139ZMP7_9SOLA3.9e-2896.88Photosystem II CP43 reaction center protein OS=Iochroma australe GN=psbC PE=3 SV... [more]
A0A0K0M3J2_9ASTR3.9e-2896.88Photosystem II CP43 reaction center protein OS=Senecio integerrimus GN=psbC PE=3... [more]
Q3ZPN6_9ASPA3.9e-2896.88Photosystem II CP43 reaction center protein (Fragment) OS=Duckeella adolphii GN=... [more]
BLAST of Lsi05G003360 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00280.12.0e-3196.88ATCG00280.1 photosystem II reaction center protein C[more]
BLAST of Lsi05G003360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|59859240|gb|AAX09389.1|5.6e-2896.88PsbC, partial (chloroplast) [Duckeella adolphii][more]
gi|641803807|gb|AIA76958.1|5.6e-2896.88photosystem II CP43 chlorophyll apoprotein (chloroplast) (chloroplast) [Capsicum... [more]
gi|459014489|ref|YP_007507107.1|5.6e-2896.88photosystem II 44 kDa protein (chloroplast) [Salvia miltiorrhiza][more]
gi|45386409|gb|AAS60054.1|5.6e-2896.88photosystem II CP43 protein, partial (chloroplast) [Kingia australis][more]
gi|697964860|ref|YP_009059515.1|5.6e-2896.88photosystem II CP43 chlorophyll apoprotein [Iris gatesii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0016168chlorophyll binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0009521photosystem
Vocabulary: Biological Process
TermDefinition
GO:0009767photosynthetic electron transport chain
GO:0019684photosynthesis, light reaction
Vocabulary: INTERPRO
TermDefinition
IPR000932PS_antenna-like
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
cellular_component GO:0009521 photosystem
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi05G003360.1Lsi05G003360.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 23..89
score: 3.
IPR000932Photosystem antenna protein-likeunknownSSF161077Photosystem II antenna protein-likecoord: 25..89
score: 1.26
NoneNo IPR availablePANTHERPTHR33180FAMILY NOT NAMEDcoord: 26..90
score: 1.2
NoneNo IPR availablePANTHERPTHR33180:SF4PHOTOSYSTEM II CP43 CHLOROPHYLL APOPROTEINcoord: 26..90
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi05G003360Silver-seed gourdcarlsiB464
Lsi05G003360Silver-seed gourdcarlsiB700
Lsi05G003360Cucumber (Chinese Long) v3cuclsiB231
Lsi05G003360Watermelon (97103) v2lsiwmbB329
Lsi05G003360Wax gourdlsiwgoB447
Lsi05G003360Cucumber (Gy14) v1cgylsiB607
Lsi05G003360Cucurbita maxima (Rimu)cmalsiB249
Lsi05G003360Cucurbita maxima (Rimu)cmalsiB440
Lsi05G003360Cucurbita moschata (Rifu)cmolsiB237
Lsi05G003360Cucurbita moschata (Rifu)cmolsiB430
Lsi05G003360Cucurbita pepo (Zucchini)cpelsiB470
Lsi05G003360Cucurbita pepo (Zucchini)cpelsiB511
Lsi05G003360Wild cucumber (PI 183967)cpilsiB210
Lsi05G003360Cucumber (Chinese Long) v2culsiB212
Lsi05G003360Melon (DHL92) v3.5.1lsimeB368
Lsi05G003360Watermelon (Charleston Gray)lsiwcgB332
Lsi05G003360Watermelon (97103) v1lsiwmB361
Lsi05G003360Cucumber (Gy14) v2cgyblsiB192
Lsi05G003360Cucumber (Gy14) v2cgyblsiB199
Lsi05G003360Melon (DHL92) v3.6.1lsimedB384