Lsi06G007950 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGCTTCATCTACAACACTTGCACTATCTTTGTTAATCTTATTTTTCGCTAGCCTACATGCCATTCAAGGAGCATTCTTAATCCCACCAGAAACTACAGTCACAATTATCAACCAAATTGAATATGGCATACCAGTCAACGTTCACTGCAAATCCAAGAACGATGACCTAGGAGTCCATACCCTTCCGCTTGGACAAAGCTACTCGTTCAAGTTCAGACCCAATCTCGTGGGGACGACGTTGTTTTACTGCAGCTTCGTATGGACTGGACAACACCAAATCTACCGGTTCGATGTCTTCAACCACAAGAGAGATGCAGGGCTTTGCACCACATGCCAATGGATCATTCATGAATATAGCATATGCCTGCAAAACCCAAAAACTGCTGACAGCAAACAAATTTGCTACAACTACGGAGATAAGGAGCCAACAAGCATTATGTAA ATGGCTTCATCTACAACACTTGCACTATCTTTGTTAATCTTATTTTTCGCTAGCCTACATGCCATTCAAGGAGCATTCTTAATCCCACCAGAAACTACAGTCACAATTATCAACCAAATTGAATATGGCATACCAGTCAACGTTCACTGCAAATCCAAGAACGATGACCTAGGAGTCCATACCCTTCCGCTTGGACAAAGCTACTCGTTCAAGTTCAGACCCAATCTCGTGGGGACGACGTTGTTTTACTGCAGCTTCGTATGGACTGGACAACACCAAATCTACCGGTTCGATGTCTTCAACCACAAGAGAGATGCAGGGCTTTGCACCACATGCCAATGGATCATTCATGAATATAGCATATGCCTGCAAAACCCAAAAACTGCTGACAGCAAACAAATTTGCTACAACTACGGAGATAAGGAGCCAACAAGCATTATGTAA ATGGCTTCATCTACAACACTTGCACTATCTTTGTTAATCTTATTTTTCGCTAGCCTACATGCCATTCAAGGAGCATTCTTAATCCCACCAGAAACTACAGTCACAATTATCAACCAAATTGAATATGGCATACCAGTCAACGTTCACTGCAAATCCAAGAACGATGACCTAGGAGTCCATACCCTTCCGCTTGGACAAAGCTACTCGTTCAAGTTCAGACCCAATCTCGTGGGGACGACGTTGTTTTACTGCAGCTTCGTATGGACTGGACAACACCAAATCTACCGGTTCGATGTCTTCAACCACAAGAGAGATGCAGGGCTTTGCACCACATGCCAATGGATCATTCATGAATATAGCATATGCCTGCAAAACCCAAAAACTGCTGACAGCAAACAAATTTGCTACAACTACGGAGATAAGGAGCCAACAAGCATTATGTAA MASSTTLALSLLILFFASLHAIQGAFLIPPETTVTIINQIEYGIPVNVHCKSKNDDLGVHTLPLGQSYSFKFRPNLVGTTLFYCSFVWTGQHQIYRFDVFNHKRDAGLCTTCQWIIHEYSICLQNPKTADSKQICYNYGDKEPTSIM
BLAST of Lsi06G007950 vs. TrEMBL
Match: B0F817_CUCME (Self-incompatibility protein 1 OS=Cucumis melo PE=4 SV=1) HSP 1 Score: 119.8 bits (299), Expect = 2.8e-24 Identity = 60/143 (41.96%), Postives = 88/143 (61.54%), Query Frame = 1
BLAST of Lsi06G007950 vs. TrEMBL
Match: B0F818_CUCME (Self-incompatibility protein 2 OS=Cucumis melo PE=4 SV=1) HSP 1 Score: 115.9 bits (289), Expect = 4.1e-23 Identity = 57/137 (41.61%), Postives = 85/137 (62.04%), Query Frame = 1
BLAST of Lsi06G007950 vs. TrEMBL
Match: G7LFK7_MEDTR (Leguminosin group486 secreted peptide OS=Medicago truncatula GN=MTR_8g078400 PE=4 SV=1) HSP 1 Score: 110.2 bits (274), Expect = 2.2e-21 Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 1
BLAST of Lsi06G007950 vs. TrEMBL
Match: V4S4P0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10007065mg PE=4 SV=1) HSP 1 Score: 106.7 bits (265), Expect = 2.5e-20 Identity = 53/123 (43.09%), Postives = 70/123 (56.91%), Query Frame = 1
BLAST of Lsi06G007950 vs. TrEMBL
Match: A0A0A0LI28_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G162130 PE=4 SV=1) HSP 1 Score: 106.3 bits (264), Expect = 3.2e-20 Identity = 60/142 (42.25%), Postives = 84/142 (59.15%), Query Frame = 1
BLAST of Lsi06G007950 vs. TAIR10
Match: AT1G04645.1 (AT1G04645.1 Plant self-incompatibility protein S1 family) HSP 1 Score: 99.8 bits (247), Expect = 1.5e-21 Identity = 51/114 (44.74%), Postives = 68/114 (59.65%), Query Frame = 1
BLAST of Lsi06G007950 vs. TAIR10
Match: AT3G16970.1 (AT3G16970.1 Plant self-incompatibility protein S1 family) HSP 1 Score: 90.1 bits (222), Expect = 1.2e-18 Identity = 41/110 (37.27%), Postives = 63/110 (57.27%), Query Frame = 1
BLAST of Lsi06G007950 vs. TAIR10
Match: AT5G12060.1 (AT5G12060.1 Plant self-incompatibility protein S1 family) HSP 1 Score: 89.0 bits (219), Expect = 2.7e-18 Identity = 45/109 (41.28%), Postives = 66/109 (60.55%), Query Frame = 1
BLAST of Lsi06G007950 vs. TAIR10
Match: AT3G17080.1 (AT3G17080.1 Plant self-incompatibility protein S1 family) HSP 1 Score: 86.3 bits (212), Expect = 1.7e-17 Identity = 48/135 (35.56%), Postives = 69/135 (51.11%), Query Frame = 1
BLAST of Lsi06G007950 vs. TAIR10
Match: AT5G12070.1 (AT5G12070.1 Plant self-incompatibility protein S1 family) HSP 1 Score: 83.6 bits (205), Expect = 1.1e-16 Identity = 45/113 (39.82%), Postives = 69/113 (61.06%), Query Frame = 1
BLAST of Lsi06G007950 vs. NCBI nr
Match: gi|659133839|ref|XP_008466918.1| (PREDICTED: uncharacterized protein LOC103504276 [Cucumis melo]) HSP 1 Score: 235.7 bits (600), Expect = 5.1e-59 Identity = 109/146 (74.66%), Postives = 121/146 (82.88%), Query Frame = 1
BLAST of Lsi06G007950 vs. NCBI nr
Match: gi|659133879|ref|XP_008466934.1| (PREDICTED: uncharacterized protein LOC103504304 [Cucumis melo]) HSP 1 Score: 229.9 bits (585), Expect = 2.8e-57 Identity = 107/146 (73.29%), Postives = 120/146 (82.19%), Query Frame = 1
BLAST of Lsi06G007950 vs. NCBI nr
Match: gi|659094489|ref|XP_008448086.1| (PREDICTED: uncharacterized protein LOC103490374 [Cucumis melo]) HSP 1 Score: 203.8 bits (517), Expect = 2.1e-49 Identity = 90/126 (71.43%), Postives = 103/126 (81.75%), Query Frame = 1
BLAST of Lsi06G007950 vs. NCBI nr
Match: gi|659133742|ref|XP_008466882.1| (PREDICTED: uncharacterized protein LOC103504203, partial [Cucumis melo]) HSP 1 Score: 161.8 bits (408), Expect = 9.3e-37 Identity = 70/93 (75.27%), Postives = 78/93 (83.87%), Query Frame = 1
BLAST of Lsi06G007950 vs. NCBI nr
Match: gi|659121590|ref|XP_008460735.1| (PREDICTED: uncharacterized protein LOC103499497 [Cucumis melo]) HSP 1 Score: 119.8 bits (299), Expect = 4.0e-24 Identity = 60/143 (41.96%), Postives = 88/143 (61.54%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |