Lsi06G010940 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi06G010940
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr06 : 21227587 .. 21229668 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGACGGTGCCGCCGCATTCTTCATCACTGCTTTTAGTTTAGTGGACTGCCTGATGACTTCGTCTGCTCTCTGTGTATTATTAATTTGCATCCTAAAGTACTGGAGGAAGGCGCATGTCTGTCTCATATTTTATAAGGATTTTTTTCCTTTTTCTAACTTAAAGATTACGGAATCTAATACAATTTAATCTGTAAAGTGAGATTTGTATCAAATTTGTTACTAATTATAGTATTATATAAAATTCATGAACAAAGTTATAAGGTAATAAAATATAAAATACATGAAATATGTAAATGGGTGCATTTTTATATTATATCTATCTTTGTATATCCTATTTAATTTTCTAATTATATTTTATCATGCAATAAATTTTTTTAAACTATTTTTATAAATACTTTTTATTTTGATGCATCCTAGACATAGACTACATTCCTCTCCATGCATCATTATCTCCTAGCATCCCTCTTAATTATATACTAAAACAATGAGTTAAAACATATTTTCTTTTCATTTAAAATAAAAATTAGTCCCAGTGGTAAATATTGATTGGCTAATTGGGTGAGCTACAGTAAGATGTGATAGGTGCAGTTAAAGATACACCAAATATTATTATTATTATTATTATTATTATTTTGTATAATTAGAGTGGCATGCACAAATTTTTCACGAGTTAAAAGACAATGAGCATCAAGTGGTTAAAAGTCATTCTCGTTAGATTTAAAACTATTCTAAAAATGTATTTGACTATTCAAAATTAATTTGATATTATACAACTCGTATTTAAAAGTGTAAAACCAACTATTAAAATGATTTTGAATATAATGACAAAATGATTTGAACTCCTTTAACCTTGTTTTCTAATTAATCAAATTTAGCCACACACAGTAACACTTCCACCAATATAATTATCCTCGACGCGTGATTATTCTTATTCAATAAATATTAGTATCTTGAGAATCTACACTACAGGTTTAATTTAACTAAGTATAGTAGCTTTGGTTTCTTAAGCTGCAACTTAATTTGGATATTTTTGTCATCGAGTATAGAAAATATGGTTCCTAATAACGATCATTCAACCAATATATTTGACCAATTTTTTTATTATTTAAACTAAATTTCTAATCTCAAAAGTCAAAATTTTAAACATCAAATAAGCATCAAACTCAAACTAAGACCATAAAATTGTATTTATATAAGACTCTTAATACGAGACTCTTGCTTGTAATGTAACAATATAATTTGGATACAATACATTGTAAAGTTATTAACTTATTATAAAAAGTTATCGTCGTTATTAATTTGTTGAATGATGAAAACAGTGTTTTACTATAACATTATCTTTTGAAATTCAAATACTTGTGAAAAACGACAAAATGAAAAGAAAAAGAAAAAGAAAAAGCAGGACATTTTATAAAGATATATATATAGAATTATTTCAGACATGTTTCTATTAATTTGTAGAATGTAAATACAAGCAACCTTTATTAACCATTTTAGCATTTTTTTTAGTACAACAATTATGAGGATGAGGATCGAATCTCCAACTTTTAGAAAGGAAGACAATATCAATTATGGTTGAGCTAAGCTCACTTTGACACTATTCTAGTAAATTGTAGTTATTAGATACTAATCATCACATAGTAGCCATGATTGTCATAATTATTTTTTAATTAAAGATAATGACATCTCATTTTCCATGTCCTCCTCCATAACCCGATCCATATCCTCCACCATAGCCCGACCCTCCACCTTCTCGACCACCCGATCCAGAACCTGCTCGAGACCCAGCATACGAGCCTGCTTCAGATCCAGAGTCAGAACCCGACCCAGAAGAAGAAGAGCTAGAGCTAGAACTCGAACTTGATCCAGAGCCAGAGCCAGAGCCAGAACCAGAACCCGAGCCCGAACCACTTCCACCGAGTCCAATGCCAATTCCAGCTCCAATCCCAACGCCTACCCCACCCAAGTCAATGCCCAAGTCTTTCCTGGCAACTCGGCTGTGGGATAAAACAAAAAGAGACGAAACAAGCAGAGCAGCAAGAACCAAGGATTTGAAACAACTCATTATTATTGATTAA

mRNA sequence

ATGGCGACGCCCGACCCTCCACCTTCTCGACCACCCGATCCAGAACCTGCTCGAGACCCAGCATACGAGCCTGCTTCAGATCCAGAGTCAGAACCCGACCCAGAAGAAGAAGAGCTAGAGCTAGAACTCGAACTTGATCCAGAGCCAGAGCCAGAGCCAGAACCAGAACCCGAGCCCGAACCACTTCCACCGAGTCCAATGCCAATTCCAGCTCCAATCCCAACGCCTACCCCACCCAAGTCAATGCCCAAGTCTTTCCTGGCAACTCGGCTGTGGGATAAAACAAAAAGAGACGAAACAAGCAGAGCAGCAAGAACCAAGGATTTGAAACAACTCATTATTATTGATTAA

Coding sequence (CDS)

ATGGCGACGCCCGACCCTCCACCTTCTCGACCACCCGATCCAGAACCTGCTCGAGACCCAGCATACGAGCCTGCTTCAGATCCAGAGTCAGAACCCGACCCAGAAGAAGAAGAGCTAGAGCTAGAACTCGAACTTGATCCAGAGCCAGAGCCAGAGCCAGAACCAGAACCCGAGCCCGAACCACTTCCACCGAGTCCAATGCCAATTCCAGCTCCAATCCCAACGCCTACCCCACCCAAGTCAATGCCCAAGTCTTTCCTGGCAACTCGGCTGTGGGATAAAACAAAAAGAGACGAAACAAGCAGAGCAGCAAGAACCAAGGATTTGAAACAACTCATTATTATTGATTAA

Protein sequence

MATPDPPPSRPPDPEPARDPAYEPASDPESEPDPEEEELELELELDPEPEPEPEPEPEPEPLPPSPMPIPAPIPTPTPPKSMPKSFLATRLWDKTKRDETSRAARTKDLKQLIIID
BLAST of Lsi06G010940 vs. TrEMBL
Match: A0A0E0IJR6_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.7e-06
Identity = 58/115 (50.43%), Postives = 73/115 (63.48%), Query Frame = 1

Query: 4   PDPPPSRPPDPEPARDPAYEPASDPESEPDPEEE-ELELELELDPEPEPEPEPEPEPEPL 63
           P+PPP RP  P P   P   P  DPE +PDPE + ELE E + +P+PE EPEP+PEPEP 
Sbjct: 129 PEPPPPRPM-PIPTPSPRPRPP-DPEPKPDPEPDPELEPEPDHEPDPELEPEPDPEPEPE 188

Query: 64  PPSPMPIPAPIPTPTPPKSMPKSFLATRLWDKTKRDETSRAARTK--DLKQLIII 116
           PP+P PIP PIP+P PP+ +P+SFLA RL      D  +    TK  D  Q I++
Sbjct: 189 PPTPKPIPTPIPSP-PPRLIPRSFLAKRLSPTGASDAATATKTTKAMDFVQTIVL 240

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0E0IJR6_ORYNI2.7e-0650.43Uncharacterized protein OS=Oryza nivara PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi06G010940.1Lsi06G010940.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None