Lsi06G011230 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TTCTCATCTCGCTTCTTCCTCTCATTTCTTTCTTGTCAATTTTGTAATTTTTTCCTTTGAGTTTTATTCCTTCATTTGAATTCTCACTCTCGCTTCTTCCTCTTATTTATTTCTTGGTCTCTTCTTTCTCTCGTTCTGATTCACTTCTCAACTTACCTCTTTGATTCGAAAAAATAAGAGGGCCTGAAGGAAATCTCGCCGGAAAAATCAGAAAAAAAGAGGGTGACATAAATAGAAATCTCTAGGAAAGAAAAAAAAACGAAAATCGCCCGAAAAACAGAGGAAGACATAAACGAAAAAATCGCTGGAATTAAAAAAAGAAAAAAGAAGAAAAGAAGAAAAGCAGAAAAAATGAAAAAGAAAAAAGAGAAGGAAGAAAGATTACAATGGTAAATTCATCCTACAATGAGACGAGCAAAAGACCAAATTTCGAGCTTTTTCTTTCCTGTGTTTCTTCTTCGTTTCTTTCTTTTTTTTTGTTTGCGTTCTTTCTGCGTTTTTCTTCTAACTTCTTTTGTTTGTTTTTGCGTCCTCTTCCGTGTTTTATTTTCTTTCCTTTTCTTTCCTTCTTTGCGTTTTTATATGTGTTACTTCTTCTTCTTTTCGTATTTTTTTTTTTTTTTTTTTTTTTTTTGTAGGCAATGGAAGAAGAAACGTGGATGCAAAGGGAGGATGGAAAAATTGCCCATTTATCTTCTCTGCCTGAAGGAGTAATAGCTTACATCTTGTCGCTCACGAGTCCATTCGATGTCTGCAGATCGTCGGCAGTTTCCCGATTTTTCAATGCGACAGCGCAGTCGGATATCGCTTGGGATAGATTCCTGCCTACGGATTGGAACGTGTTGATTTCTCCGAGGAAATCAGTTGAACAGAATGTTGATCCAATTTCGAGCTCGAAGAAGTAGATATTTTTCTCCCTTTGCGACAATCCAGTCCTAATTGATGACGGCAATAAGGTAAGCTTTCGGATTCCCCAATTTCTCTGAGTTGAAGGCGGCCGGAGTTGGATCAGTGGTCAACAACACACAACTCTGACTTCAGCCCTACCATCATCGGAAGTTTCTTTATTGTAACGATGGCTTCCAAATTGACCTTGGAGGCCCCATTTTATTCTTTATATCTACTAATCTATTCATTTTGTTAGATTCTACCTTTACACGTTATTTTAGAATATAAACACATTCTGAAAACTCAAAATTAGAAGTAAAAAAAGAGAAATTACTATAAACAGAAAAAATATCAAACTATTTACAAATATAGAAAAATTTCATTCTATCAGTGATAGACCGTGATAGAATTCTATCGCTTTCTATCGCTCAAGCAAATAAATTTTATCGCCTGAGCGATAGAAAGCGATAGAATTCTATCGCGATCTATTAGTGATAGACGGTAAAATTTTTCTATATTTGTAAATAGTTTGACTTATTTTTTTATATTTGAAAAGAGTCCTAAAAAAACTTCAAAACCCTTCTATCAACAAATAAGAAGGGCAAATTGCAAAAATTACTATGGTGGTAGTTGTTAGGAGTGCGAACAAAATCCCACATTAGTTAGGGAAGGAAGTGATATGGGTATATAAGTGAGGACAATTATTTCTATTGATATGAGACCTTTTGGGTGGTACTAAAAACAAAGCTACGAGGGTTTATGTCCAAAGTGAACAATATCATATCATTGTAGAGGTCTGTTGTCCTTATCAATAATTACACCCTCTAAACATTGAGTCTTCAAATTTATACAATTATTATAATTTTTAGACATTTGTACAAGGGTGATCCTATGTTGAGTGACCTCTTAGTAATTTTTCTAGAATGCATGTGAGTGAGAACAAAGCATGCTGAAAAGACCCATGATGGTTTGTGGGCATTCATGACAAGAAAGGATGGCGTAGCCGGGTTGCAAGGGAATGCCGGGACCAAGTGCCGAATCCAGATTTCGAATTCTGGTCCGAATCCTGGGCCTGGGGCGTTACAAGTTCTGTAATTATCTTGGATTCCAACAAAAACTCTTGCAATTATTTTTAAAAAGGTTCATCTCATTTGGATTTAGATTCTTCTTCATGTTTTGATTGGAAACTTTTGTTATCCTCTAGACTGGAGTTGCTGTTCCATTTTTTCTGGGTTAAAAACCTCTTGTTCTTGCTCCATCACCTTTTATTCTCTTAAACTCGACATAAATTGAGTGGAATCATTGGTATAAAGCTTTTTATGCACTTTAGAGGATTAACACTAAAGGTTTTGTGCACTTCATTATTAATTTCTTTTTTTTTACATAAATTGAATGGGTTGAATCATTGGTACATTACAGAGCTTGTCATTAGAAAAATGGAGTGGTAAAAAATGCATAATGCTTGGAGCAAGGGACCTCTCAGTTGTTTGGGGTGATACCCCTTTTTATTGGACCTGGGAACACCATCCTGATTCGAGGTTCAAAGTCTATGAGATATGAGCAAATCGTATTCCCCTCCCAATTCTAATACTCTGCTTTTTTAATGTGAATGTGTGGAATCAGATTTGCAGGGGTAGCTGTACTCCAAAATGTATGGTGGCTTGAAATACGTGGAAGAATAAGTTGCAGAATGTTATCTCATAAAACAACTTATGCAATTTACTTTGTATTCAAGATGATGCGACATAGTTACTATGGGTTCGATATTGATCCTGCTGAGGCCGCAGTGGGAATTCTTGGAACTGAAAACCATCGGAAAAGTGTTTGTTTGGACCCTTATTTGAACAATCCTCGACCGGAGTACGATGATGAACCATTTATGATGTGGCCTCGGTCTGAAGACATGTCAGGATTCGAGCAGCCACAGGAGAGACATGATGGTTGGTTTGAAATTGAGTTGGGAGAGTTTGAAAGTAGTGATGGAGATGATGAAATTGAGATGAGTCTTATGGAGGTGAAAGGCACTACTGATAAGATTGGTCTTGTTGTTGAGGGGATTGAGATTAGGCCTAAACTCATGTTGTA TTCTCATCTCGCTTCTTCCTCTCATTTCTTTCTTGTCAATTTTGTAATTTTTTCCTTTGAGTTTTATTCCTTCATTTGAATTCTCACTCTCGCTTCTTCCTCTTATTTATTTCTTGGTCTCTTCTTTCTCTCGTTCTGATTCACTTCTCAACTTACCTCTTTGATTCGAAAAAATAAGAGGGCCTGAAGGAAATCTCGCCGGAAAAATCAGAAAAAAAGAGGGTGACATAAATAGAAATCTCTAGGAAAGAAAAAAAAACGAAAATCGCCCGAAAAACAGAGGAAGACATAAACGAAAAAATCGCTGGAATTAAAAAAAGAAAAAAGAAGAAAAGAAGAAAAGCAGAAAAAATGAAAAAGAAAAAAGAGAAGGAAGAAAGATTACAATGATGGAAGAAGAAACGTGGATGCAAAGGGAGGATGGAAAAATTGCCCATTTATCTTCTCTGCCTGAAGGAGTAATAGCTTACATCTTGTCGCTCACGAGTCCATTCGATGTCTGCAGATCGTCGGCAGTTTCCCGATTTTTCAATGCGACAGCGCAGTCGGATATCGCTTGGGATAGATTCCTGCCTACGGATTGGAACGTGTTGATTTCTCCGAGGAAATCAGTTGAACAGAATGTTGATCCAATTTCGAGCTCGAAGAAGTAGATATTTTTCTCCCTTTGCGACAATCCAGTCCTAATTGATGACGGCAATAAGAATGCATGTGAGTGAGAACAAAGCATGCTGAAAAGACCCATGATGGTTTGTGGGCATTCATGACAAGAAAGGATGGCGTAGCCGGGTTGCAAGGGAATGCCGGGACCAAGTGCCGAATCCAGATTTCGAATTCTGGTCCGAATCCTGGGCCTGGGGCGTTACAAGTTCTGTAATTATCTTGGATTCCAACAAAAACTCTTGCAATTATTTTTAAAAAGAGCTTGTCATTAGAAAAATGGAGTGGTAAAAAATGCATAATGCTTGGAGCAAGGGACCTCTCAGTTGTTTGGGGTGATACCCCTTTTTATTGGACCTGGGAACACCATCCTGATTCGAGATTTGCAGGGGTAGCTGTACTCCAAAATGTATGGTGGCTTGAAATACGTGGAAGAATAAGTTGCAGAATGTTATCTCATAAAACAACTTATGCAATTTACTTTGTATTCAAGATGATGCGACATAGTTACTATGGGTTCGATATTGATCCTGCTGAGGCCGCAGTGGGAATTCTTGGAACTGAAAACCATCGGAAAAGTGTTTGTTTGGACCCTTATTTGAACAATCCTCGACCGGAGTACGATGATGAACCATTTATGATGTGGCCTCGGTCTGAAGACATGTCAGGATTCGAGCAGCCACAGGAGAGACATGATGGTTGGTTTGAAATTGAGTTGGGAGAGTTTGAAAGTAGTGATGGAGATGATGAAATTGAGATGAGTCTTATGGAGGTGAAAGGCACTACTGATAAGATTGGTCTTGTTGTTGAGGGGATTGAGATTAGGCCTAAACTCATGTTGTA ATGATGGAAGAAGAAACGTGGATGCAAAGGGAGGATGGAAAAATTGCCCATTTATCTTCTCTGCCTGAAGGAGTAATAGCTTACATCTTGTCGCTCACGAGTCCATTCGATGTCTGCAGATCGTCGGCAGTTTCCCGATTTTTCAATGCGACAGCGCAGTCGGATATCGCTTGGGATAGATTCCTGCCTACGGATTGGAACGTGTTGATTTCTCCGAGGAAATCAGTTGAACAGAATGTTGATCCAATTTCGAGCTCGAAGAAGTAG MMEEETWMQREDGKIAHLSSLPEGVIAYILSLTSPFDVCRSSAVSRFFNATAQSDIAWDRFLPTDWNVLISPRKSVEQNVDPISSSKK
BLAST of Lsi06G011230 vs. Swiss-Prot
Match: SKIP3_ARATH (F-box protein SKIP3 OS=Arabidopsis thaliana GN=SKIP3 PE=1 SV=2) HSP 1 Score: 68.6 bits (166), Expect = 4.0e-11 Identity = 30/57 (52.63%), Postives = 42/57 (73.68%), Query Frame = 1
BLAST of Lsi06G011230 vs. Swiss-Prot
Match: P2B10_ARATH (F-box protein PP2-B10 OS=Arabidopsis thaliana GN=PP2B10 PE=1 SV=1) HSP 1 Score: 62.4 bits (150), Expect = 2.9e-09 Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 1
BLAST of Lsi06G011230 vs. Swiss-Prot
Match: P2B11_ARATH (F-box protein PP2-B11 OS=Arabidopsis thaliana GN=PP2B11 PE=1 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 2.4e-08 Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 1
BLAST of Lsi06G011230 vs. Swiss-Prot
Match: P2B12_ARATH (Putative F-box protein PP2-B12 OS=Arabidopsis thaliana GN=PP2B12 PE=3 SV=1) HSP 1 Score: 59.3 bits (142), Expect = 2.4e-08 Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1
BLAST of Lsi06G011230 vs. Swiss-Prot
Match: PP2B2_ARATH (Putative F-box protein PP2-B2 OS=Arabidopsis thaliana GN=PP2B2 PE=3 SV=2) HSP 1 Score: 57.8 bits (138), Expect = 7.1e-08 Identity = 24/55 (43.64%), Postives = 38/55 (69.09%), Query Frame = 1
BLAST of Lsi06G011230 vs. TrEMBL
Match: A0A0A0LUI2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421930 PE=4 SV=1) HSP 1 Score: 102.4 bits (254), Expect = 2.8e-19 Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 1
BLAST of Lsi06G011230 vs. TrEMBL
Match: A0A0A0LWS1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421890 PE=4 SV=1) HSP 1 Score: 100.5 bits (249), Expect = 1.1e-18 Identity = 55/87 (63.22%), Postives = 62/87 (71.26%), Query Frame = 1
BLAST of Lsi06G011230 vs. TrEMBL
Match: A0A0A0LU29_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421900 PE=4 SV=1) HSP 1 Score: 97.4 bits (241), Expect = 9.0e-18 Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 1
BLAST of Lsi06G011230 vs. TrEMBL
Match: A0A0A0LX65_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421920 PE=4 SV=1) HSP 1 Score: 88.2 bits (217), Expect = 5.4e-15 Identity = 44/78 (56.41%), Postives = 55/78 (70.51%), Query Frame = 1
BLAST of Lsi06G011230 vs. TrEMBL
Match: A0A0A0LZQ3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G421910 PE=4 SV=1) HSP 1 Score: 86.3 bits (212), Expect = 2.1e-14 Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 1
BLAST of Lsi06G011230 vs. TAIR10
Match: AT2G02360.1 (AT2G02360.1 phloem protein 2-B10) HSP 1 Score: 62.4 bits (150), Expect = 1.6e-10 Identity = 27/66 (40.91%), Postives = 42/66 (63.64%), Query Frame = 1
BLAST of Lsi06G011230 vs. TAIR10
Match: AT1G80110.1 (AT1G80110.1 phloem protein 2-B11) HSP 1 Score: 59.3 bits (142), Expect = 1.4e-09 Identity = 28/49 (57.14%), Postives = 35/49 (71.43%), Query Frame = 1
BLAST of Lsi06G011230 vs. TAIR10
Match: AT5G24560.1 (AT5G24560.1 phloem protein 2-B12) HSP 1 Score: 59.3 bits (142), Expect = 1.4e-09 Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1
BLAST of Lsi06G011230 vs. TAIR10
Match: AT2G02250.1 (AT2G02250.1 phloem protein 2-B2) HSP 1 Score: 57.8 bits (138), Expect = 4.0e-09 Identity = 24/55 (43.64%), Postives = 38/55 (69.09%), Query Frame = 1
BLAST of Lsi06G011230 vs. TAIR10
Match: AT2G02340.1 (AT2G02340.1 phloem protein 2-B8) HSP 1 Score: 56.2 bits (134), Expect = 1.2e-08 Identity = 24/61 (39.34%), Postives = 40/61 (65.57%), Query Frame = 1
BLAST of Lsi06G011230 vs. NCBI nr
Match: gi|778660698|ref|XP_011656739.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis sativus]) HSP 1 Score: 102.4 bits (254), Expect = 4.0e-19 Identity = 55/89 (61.80%), Postives = 65/89 (73.03%), Query Frame = 1
BLAST of Lsi06G011230 vs. NCBI nr
Match: gi|449457133|ref|XP_004146303.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis sativus]) HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18 Identity = 55/87 (63.22%), Postives = 62/87 (71.26%), Query Frame = 1
BLAST of Lsi06G011230 vs. NCBI nr
Match: gi|659107353|ref|XP_008453631.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis melo]) HSP 1 Score: 100.5 bits (249), Expect = 1.5e-18 Identity = 54/87 (62.07%), Postives = 60/87 (68.97%), Query Frame = 1
BLAST of Lsi06G011230 vs. NCBI nr
Match: gi|659107347|ref|XP_008453628.1| (PREDICTED: F-box protein PP2-B10-like [Cucumis melo]) HSP 1 Score: 99.8 bits (247), Expect = 2.6e-18 Identity = 51/78 (65.38%), Postives = 58/78 (74.36%), Query Frame = 1
BLAST of Lsi06G011230 vs. NCBI nr
Match: gi|778660690|ref|XP_004146304.2| (PREDICTED: F-box protein PP2-B10-like [Cucumis sativus]) HSP 1 Score: 97.4 bits (241), Expect = 1.3e-17 Identity = 52/81 (64.20%), Postives = 60/81 (74.07%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |