Lsi09G009060 (gene) Bottle gourd (USVL1VR-Ls)

NameLsi09G009060
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr09 : 10947292 .. 10947503 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAGTGACCGCCAGCGGTTGGAACCGGCATTATAAAATGCCCTAACGAGCGCGTTGGCAAGAATCAAGATCCCTTCTCTCCTACTGCGAGATTTCCTCTCTTTGTTGTCTTTCCCTTTTCCGTTCGACTTCAGATAATTTTTAACTTCAGGTTAGGGCTTCTTTCTTCCCGCTCTCTACACTTTTCCCTACTGAATTTGATTCCCATC

mRNA sequence

ATGTTCACGGTTGGAACCGGCATTATAAAATGCCCTAACGAGCGCGTTGGCAAGAATCAAGATCCCTTCTCTCCTACTGCGAGATTTCCTCTCTTTGTTGTCTTTCCCTTTTCCGTTCGACTTCAGATAATTTTTAACTTCAGGTTAGGGCTTCTTTCTTCCCGCTCTCTACACTTTTCCCTACTGAATTTGATTCCCATC

Coding sequence (CDS)

ATGTTCACGGTTGGAACCGGCATTATAAAATGCCCTAACGAGCGCGTTGGCAAGAATCAAGATCCCTTCTCTCCTACTGCGAGATTTCCTCTCTTTGTTGTCTTTCCCTTTTCCGTTCGACTTCAGATAATTTTTAACTTCAGGTTAGGGCTTCTTTCTTCCCGCTCTCTACACTTTTCCCTACTGAATTTGATTCCCATC

Protein sequence

MFTVGTGIIKCPNERVGKNQDPFSPTARFPLFVVFPFSVRLQIIFNFRLGLLSSRSLHFSLLNLIPI
BLAST of Lsi09G009060 vs. TrEMBL
Match: A0A0A0KRC0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G349070 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 3.0e-13
Identity = 45/64 (70.31%), Postives = 49/64 (76.56%), Query Frame = 1

Query: 3   TVGTGIIKCPNERVGKNQDPFSPTARFPLFVVFPFSVRLQIIFNFRLGLLSSRSLHFSLL 62
           +VG GIIK     + K+      TARFP FVVFPFS+RL IIFNFRLGLLSSRSLHFSLL
Sbjct: 47  SVGIGIIKALRSALPKSS---LLTARFPFFVVFPFSLRLHIIFNFRLGLLSSRSLHFSLL 106

Query: 63  NLIP 67
           NLIP
Sbjct: 107 NLIP 107

BLAST of Lsi09G009060 vs. NCBI nr
Match: gi|700195755|gb|KGN50932.1| (hypothetical protein Csa_5G349070 [Cucumis sativus])

HSP 1 Score: 82.0 bits (201), Expect = 4.3e-13
Identity = 45/64 (70.31%), Postives = 49/64 (76.56%), Query Frame = 1

Query: 3   TVGTGIIKCPNERVGKNQDPFSPTARFPLFVVFPFSVRLQIIFNFRLGLLSSRSLHFSLL 62
           +VG GIIK     + K+      TARFP FVVFPFS+RL IIFNFRLGLLSSRSLHFSLL
Sbjct: 47  SVGIGIIKALRSALPKSS---LLTARFPFFVVFPFSLRLHIIFNFRLGLLSSRSLHFSLL 106

Query: 63  NLIP 67
           NLIP
Sbjct: 107 NLIP 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KRC0_CUCSA3.0e-1370.31Uncharacterized protein OS=Cucumis sativus GN=Csa_5G349070 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|700195755|gb|KGN50932.1|4.3e-1370.31hypothetical protein Csa_5G349070 [Cucumis sativus][more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi09G009060.1Lsi09G009060.1mRNA


The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None