Lsi10G007350 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi10G007350
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description30S ribosomal protein S19
Locationchr10 : 10156045 .. 10160090 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGCCACGATCTATATGGAAGAGCTGTTTTGTTGATGCATTTCTGTTGAAAATGAAGAATAAGATAGATCCTGTTTTGAACAGGAAAATTTGGTCACGTAGATCTACGATTTTGCCGGAATTCGTTGGTAACTCCGTACGAATTTACAATGGAAAAACTTTTGTTCGCTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTATGACACGGAAACGAAGAGTTCCAAAAACAAATATTGGACCTGGACCGCGAAAAAAGGGGGATAAAAAGTAAGTCCAAGCGCAAGGAAATCCGATTTCGCATTTCATATTCACTTTTTTTTTTTTTTTTCCTCAAATCAAGTTTCTAGTAAAATCAGTCCGATGCAGTCATTGTCGCTGTTTTTTTTATATATTTTCGCCAGAGACAGTCATCGTTTGACGTTTGATATTGCCACAGCTCTCGTTGTTTCGGTATGATTCTGATATAGTCGCCACCACCCTTTCTTTACGTTATGTCTCACTATATACTGATAATTTTAAATCTCTATTTCAAATTTTATTATGAGTTCTGTTCTACCAAAAAAATTAGAATTAGAAACTTTCAAGAGGAGCTCTATTCTTTGATAACAACAGTCGACCTCTATGTTTAATTTATTGATCTTGGAATTCCCACTGTGCAGCAATATTACTATTTAATGCAAATCCTCATCTCAGTTGTAACTTAGGAATAGGTATTCTTGTTATTGTTGTTAAAATCTTATTATACTGTTCTTCAGCCCTCTGTCATAGAAGTTGTTAGGCTGTTAGCTCAATTACGTGATATTTGTTAATACCTCACTCTTGTAAACCTTGGGTATTTATACCCCTTTGTGATTATACTGAGTAATCAAGCATTACAGCAAGTTACTTTCATTTACATTGCTCTGAGTTATTTGTTGAGGTTTTCAACTTGATCCTTGGTTTGTAAGTTGGTATCAGAGCCATCCTCTTTCTTTTAGACTATCTCTGCTGTTCTTGTTACTCCTAATCCGAGGCTTGAACAATGGGTGACTAAAGATCAAGCACTCCTTGGGTGGTTGTTTGGATCAATGACGTCAGCTATTGCCACAGAAGTCCATCTATTTGGTGCAACAAATGCTAAGAGCAATTCTACAAACCACAAGAAAGGGAATTATGAATATGGCAGAATACTTCTTGTCTCTGAAAGCTGGGTCACCAGGTATCTCTCAATGATCTAATTTCTTACGCCATAGACGGTAATTAATGCTGAGTACCTTTCTATTACTTGTACTATTGAAGGTAAAGCCACTCTAAAATGGCTAGAACAACCCAAAACTGACATAAATCTTACTCTACACAACAGACATATATACATACTTATTTATTTTTCCTCCCTATAATCACACAGGGAAATTGGGGAAAATAAGACAAAATTTTGGAGAAAAAAAAATTTGGGATTACTTAAAAAAAAAAAAGAGAGTTTTAGGATAAATTGCATGTGATATTTACAATTTGCCCATTTAGTTAAAAAAAGAAAAGCCCCAAACCTCTTTAGTCTTCACGATGTCTTCTCTTTCACACGATTTCTTCTCCTTCCATTCCATCTCTCGTGCACAACTCATAGAAATAGCATCATCGGACTCCTTCCATTCCATCTCTCGTGCTCGACTCATAGCAGTTGCATCACCAGATGTTACGTTTCCATGCCATCCATCTCTTTGCGCACGACTCATAGCAGCAGCAGCCCGATTCTTAAACTTTATTGTAAAGAACATTGTAAAGAACTTTAAACCTTTTTATTTGTGTGAAAATTTATATTTTGGGTTTTTTTTTTTTGAGTTGTTAACTTATATATTTATTGTTTTTTTTTTTTTTTTTATTGTTTATAACCTTAAACCTTGATATTTTGGTTAATTTTTTTTTTTTTTTTAGTTTTTTTCCCTCATTTTCTTTGTATTTTCTTTTAAGGTTTCTGTTTTTTTTTTTTATAATTTTTTTTCATGTGTCTAATTTGTAAATTTTTTTTTGAGGTTGCAGAAATATTAAAAACATTTTGATAACTTAAGGATGACACATATGACTAGAAAAGATGAAGGAGGTTTATTAAAAGATATTGTTGTAAGTAAAGAAATAGCATACAAAGATTTAATGGCCTAGACTCTATGCTCTTGCAAAAATTAATCCTATGGGAGTTTGATATGAAAATAAGATGTACGAGATAAAAGTTGAAAATGAAGTTTCTCCAATTGAGTTAAGCAATCTGTTGGAAGTCTGTACATTTCATTTGAACCTTGGAACAGTAGCGAAACGGGTGATTTACATGGTGAAAGTAAGAAAGGTTTAAGAACTTAAATGTTGTAATGGATGCATTAAATGAGATTGAAGTTCAAGTTGACTTGCACGATGACACAATAAGGACTACTAGGTGAGAATCATATGATTCAAAAGCATATAATTTTACATGGAGTCAATTGGGATGAATATTGAGTCGTATGAGTCGAGAAGTACTTCAAGAGAATATAGTAAAGGAAAAGGTAAAGTTAAATATGGATCAACCAGCTGAAGGACATATTGAAAAAAAAGAAAGACTCTATAAGTGATGAGTTGGAAGTAGGACAATTTTTTTTTTCGCAAGAGAGAATTGTCCATGAGGTTAAGTATTTTGACAATGAAAAAGAATTTTCAGATTTCAAGGAAGAAGTCTACGAAACTGGTGCTTTATGTTAAATGCATTGACGAGAATTGTAAGTAGAGATTGCGAGCAATCAAATTGGAGGGCTCAAACATATTCAAGATTTCAAAGTATGTAAATGTTCATTCGCACTCTCTTGATATTCTGAATCAAGACCATAGGTAAGCAAAAACTTAGATAGTTGGATAACTAATCAAGTCCAAATCAAAGGAGTTGGTCGTTAATACAAACCACATGAAATCATAGAAGACATGAGACAAGACTATGACATAAATATGAGTTATGAAAAAGCATAGTGTGCCAGAGAAGTTGCATACGAACTAGTACGAGGGTTCCTTGAAAAGTCATATAATTTATTGTGTCGTTATGGTGAAACACTGAAACTTGCAAATTCAGGTACAATTTACTAAATTGAACTTGAAGATGAGTCTTTCTTCAAATGTTTTTTTATGGCTATTAGTCCATGTGTTTGATGATTTGTAAGTGCATAAGACCTGTTATAGTTGTGGATGAAACTTTTCTAAAAAACAAATATCGAGGTCAATTGATAGTTGTCATTTGCTTAAGATGATAATAATCAAATTTATCCCCTAGCCTTCAGAATTGTTGATAGACTCCATAATCCATTTCAATTTCAAAATATTTGGAGCAAAACAGTCGAACATAGGATTTATAGTAAGGAATAATGCTTTTTTTTTTCCAAGTTAATGGACACATAGTAACAACTAATCAAAATTGTTACTTGTGCCAAAAACTTCTAAAATTTTCGAAGATAATTCTCAGATTTGAGTCATTTTTCTTCTCCTTCACTTTTCTTCTAGTCTCCTCAGAATATTTTTAATCTTAACTAATACTTTATCTACCCTAATCTATTAGGTTCCTCCTTGGACTAGAGCTCCCTTGACTAGACTGAGCGCTCAGATGAATTTGAATCCCGTGATGTCACATCACCTTGAGGCTCCTCTACGATTTCATTTACTTGCCCAATCAAGGGAACAGGATCCACTTGTAGTGCCAGCTGTGGTGGGGGATCGTCTGGTGCCAGCTGTGGTGGTTTCGATGCTAGTTATGGTGGGGGATCATCTTCGACTTGTAGTCTCGGCTATGGTGTGAGATCGTTTGGTGCCAGCTATGGTGGGGTATCGACTTCCGATGCTAGCTGTGGTGGTTTCGGAGCCAACTGTGCTGGGGGATTGTCTTCCACTGCTAGTTGTGGTGATTCCGGTGCCAGTTGTGGTCAGGGATCCTCTTCCCGTGCCAGTGGTACTCGAAAATCCACTTGTAGTGTCTGCTGTGGTGGGAGAAGGTCTCCCCAAGCTGGTGTTACTGGGCGAACGCCTGGTCGCGCTAAATAG

mRNA sequence

ATGTCGCCACGATCTATATGGAAGAGCTGTTTTGTTGATGCATTTCTGTTGAAAATGAAGAATAAGATAGATCCTGTTTTGAACAGGAAAATTTGGTCACGTAGATCTACGATTTTGCCGGAATTCGTTGGTAACTCCGTACGAATTTACAATGGAAAAACTTTTGTTCGCTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTATGACACGGAAACGAAGAGTTCCAAAAACAAATATTGGACCTGGACCGCGAAAAAAGGGGGATAAAAAAGACAGTCATCGTTTGACGTTTGATATTGCCACAGCTCTCGTTGTTTCGACTATCTCTGCTGTTCTTGTTACTCCTAATCCGAGGCTTGAACAATGGGTGACTAAAGATCAAGCACTCCTTGGGTGGTTGTTTGGATCAATGACGTCAGCTATTGCCACAGAAGTCCATCTATTTGGTGCAACAAATGCTAAGAGCAATTCTACAAACCACAAGAAAGGGAATTATGAATATGGCAGAATACTTCTTGTCTCTGAAAGCTGGGTCACCAGTGCCAGCTGTGGTGGGGGATCGTCTGGTGCCAGCTGTGGTGGTTTCGATGCTAGTTATGGTGGGGGATCATCTTCGACTTGTAGTCTCGGCTATGGTGTGAGATCGTTTGGTGCCAGCTATGGTGGGGTATCGACTTCCGATGCTAGCTGTGGTGGTTTCGGAGCCAACTGTGCTGGGGGATTGTCTTCCACTGCTAGTTGTGGTGATTCCGGTGCCAGTTGTGGTCAGGGATCCTCTTCCCGTGCCAGTGGTACTCGAAAATCCACTTGTAGTGTCTGCTGTGGTGGGAGAAGGTCTCCCCAAGCTGGTGTTACTGGGCGAACGCCTGGTCGCGCTAAATAG

Coding sequence (CDS)

ATGTCGCCACGATCTATATGGAAGAGCTGTTTTGTTGATGCATTTCTGTTGAAAATGAAGAATAAGATAGATCCTGTTTTGAACAGGAAAATTTGGTCACGTAGATCTACGATTTTGCCGGAATTCGTTGGTAACTCCGTACGAATTTACAATGGAAAAACTTTTGTTCGCTGTAAGATCACTGAAGGAAGGGTTGGTCATAAATTTGGAGAGTTTGCTATGACACGGAAACGAAGAGTTCCAAAAACAAATATTGGACCTGGACCGCGAAAAAAGGGGGATAAAAAAGACAGTCATCGTTTGACGTTTGATATTGCCACAGCTCTCGTTGTTTCGACTATCTCTGCTGTTCTTGTTACTCCTAATCCGAGGCTTGAACAATGGGTGACTAAAGATCAAGCACTCCTTGGGTGGTTGTTTGGATCAATGACGTCAGCTATTGCCACAGAAGTCCATCTATTTGGTGCAACAAATGCTAAGAGCAATTCTACAAACCACAAGAAAGGGAATTATGAATATGGCAGAATACTTCTTGTCTCTGAAAGCTGGGTCACCAGTGCCAGCTGTGGTGGGGGATCGTCTGGTGCCAGCTGTGGTGGTTTCGATGCTAGTTATGGTGGGGGATCATCTTCGACTTGTAGTCTCGGCTATGGTGTGAGATCGTTTGGTGCCAGCTATGGTGGGGTATCGACTTCCGATGCTAGCTGTGGTGGTTTCGGAGCCAACTGTGCTGGGGGATTGTCTTCCACTGCTAGTTGTGGTGATTCCGGTGCCAGTTGTGGTCAGGGATCCTCTTCCCGTGCCAGTGGTACTCGAAAATCCACTTGTAGTGTCTGCTGTGGTGGGAGAAGGTCTCCCCAAGCTGGTGTTACTGGGCGAACGCCTGGTCGCGCTAAATAG

Protein sequence

MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSHRLTFDIATALVVSTISAVLVTPNPRLEQWVTKDQALLGWLFGSMTSAIATEVHLFGATNAKSNSTNHKKGNYEYGRILLVSESWVTSASCGGGSSGASCGGFDASYGGGSSSTCSLGYGVRSFGASYGGVSTSDASCGGFGANCAGGLSSTASCGDSGASCGQGSSSRASGTRKSTCSVCCGGRRSPQAGVTGRTPGRAK
Homology
[Close]
BLAST of Lsi10G007350 vs. Swiss-Prot
Match: RT19_PETHY (Ribosomal protein S19, mitochondrial OS=Petunia hybrida GN=RPS19 PE=2 SV=2)

HSP 1 Score: 147.1 bits (370), Expect = 3.0e-34
Identity = 73/95 (76.84%), Postives = 79/95 (83.16%), Query Frame = 1 

Query: 1  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
          M  RSIWK  FVDAFLL+MK K D + NRKIWSRRS+ILPEFV   VRIYNGKTFVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDLLFNRKIWSRRSSILPEFVDCFVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK 96
          TEG+VGHKFGEFA TRKRR  +TNIGPG RK+G K
Sbjct: 61 TEGKVGHKFGEFAFTRKRRPSRTNIGPG-RKRGKK 94

[Close]
BLAST of Lsi10G007350 vs. Swiss-Prot
Match: RT19_ARATH (40S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 SV=2)

HSP 1 Score: 120.9 bits (302), Expect = 2.3e-26
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 1 

Query: 1   MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
           M  RS+WK  FVDAFL+K KN     LNRKIWSRRSTILPE+V ++VRIYNGKT VRCKI
Sbjct: 131 MMSRSVWKDPFVDAFLMKKKNA---ALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 61  TEGRVGHKFGEFAMTRK 78
           TEG+VGHKFGEFA TRK
Sbjct: 191 TEGKVGHKFGEFAFTRK 204

[Close]
BLAST of Lsi10G007350 vs. Swiss-Prot
Match: RT19_MARPO (Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha GN=RPS19 PE=3 SV=2)

HSP 1 Score: 89.0 bits (219), Expect = 9.7e-17
Identity = 52/91 (57.14%), Postives = 57/91 (62.64%), Query Frame = 1 

Query: 4  RSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKITEG 63
          RSIWK  FVD  L K K      +  +IWSRRS ILP+FVG   +IYNGK FV  KITE 
Sbjct: 3  RSIWKGPFVDTCLFKQKK-----IRWRIWSRRSCILPQFVGCYAQIYNGKGFVGLKITEE 62

Query: 64 RVGHKFGEFAMTR------KRRVP-KTNIGP 88
           VGHKFGEFA TR      KR +P KT I P
Sbjct: 63 MVGHKFGEFASTRKTSSLGKRALPSKTKIKP 88

[Close]
BLAST of Lsi10G007350 vs. Swiss-Prot
Match: RS19_RHILO (30S ribosomal protein S19 OS=Rhizobium loti (strain MAFF303099) GN=rpsS PE=3 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 3.1e-15
Identity = 47/98 (47.96%), Postives = 60/98 (61.22%), Query Frame = 1 

Query: 4  RSIWKSCFVDAFLLKMKNKI-----DPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRC 63
          RSIWK  F+D +LLK  +K+     + V+  K+WSRRSTILP+FVG +  +YNG+  V  
Sbjct: 3  RSIWKGPFIDGYLLKKVDKVREGGRNEVI--KMWSRRSTILPQFVGFTFGVYNGQKHVPV 62

Query: 64 KITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK 97
           + E  VGHKFGEFA TR      T  G G  KK  +K
Sbjct: 63 SVNEDMVGHKFGEFAPTR------TYYGHGADKKAKRK 92

[Close]
BLAST of Lsi10G007350 vs. Swiss-Prot
Match: RS19_BRUAB (30S ribosomal protein S19 OS=Brucella abortus biovar 1 (strain 9-941) GN=rpsS PE=3 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.1e-15
Identity = 47/98 (47.96%), Postives = 59/98 (60.20%), Query Frame = 1 

Query: 4  RSIWKSCFVDAFLLKMKNKI-----DPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRC 63
          RS+WK  FVD +LLK   K+     + V+  K+WSRRSTILP+FVG +  +YNG   V  
Sbjct: 3  RSVWKGPFVDGYLLKKAEKVREGGRNEVI--KMWSRRSTILPQFVGLTFGVYNGNKHVPV 62

Query: 64 KITEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKK 97
           ++E  VGHKFGEFA TR      T  G G  KK  +K
Sbjct: 63 SVSEEMVGHKFGEFAPTR------TYYGHGADKKAKRK 92

[Close]
BLAST of Lsi10G007350 vs. TrEMBL
Match: D5I3G6_CUCPE (Ribosomal protein S19 OS=Cucurbita pepo GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 1 

Query: 1   MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
           M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61  TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH 100
           TEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ + ++
Sbjct: 61  TEGRVGHKFGEFALTRKRRLSRTNIGPG-KKRGESQGAY 98

[Close]
BLAST of Lsi10G007350 vs. TrEMBL
Match: D5I3F0_CUCPE (Ribosomal protein S19 OS=Cucurbita pepo GN=rps19-1 PE=3 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.1e-35
Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 1 

Query: 1   MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
           M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61  TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH 100
           TEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ + ++
Sbjct: 61  TEGRVGHKFGEFALTRKRRLSRTNIGPG-KKRGESQGAY 98

[Close]
BLAST of Lsi10G007350 vs. TrEMBL
Match: D5I3D4_CITLA (Ribosomal protein S19 OS=Citrullus lanatus GN=rps19-2 PE=3 SV=1)

HSP 1 Score: 157.1 bits (396), Expect = 3.2e-35
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 1 

Query: 1  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
          M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG 94
          TEGRVGHKFGEFA+TRKRR+ +TNIGPG  KKG
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPG--KKG 91

[Close]
BLAST of Lsi10G007350 vs. TrEMBL
Match: Q5MA05_TOBAC (Ribosomal protein S19 OS=Nicotiana tabacum GN=rps19 PE=3 SV=2)

HSP 1 Score: 154.5 bits (389), Expect = 2.1e-34
Identity = 76/95 (80.00%), Postives = 81/95 (85.26%), Query Frame = 1 

Query: 1  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
          M  RSIWK  FVDAFLL+MK K DP+ NRKIWSRRS+ILPEFV  SVRIYNGKTFVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLFNRKIWSRRSSILPEFVDCSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK 96
          TEG+VGHKFGEFA TRKRR  +TNIGPG RKKG K
Sbjct: 61 TEGKVGHKFGEFAFTRKRRPSRTNIGPG-RKKGKK 94

[Close]
BLAST of Lsi10G007350 vs. TrEMBL
Match: D5I3A0_CITLA (Ribosomal protein S19 OS=Citrullus lanatus GN=rps19-1 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 8.0e-34
Identity = 74/93 (79.57%), Postives = 81/93 (87.10%), Query Frame = 1 

Query: 1  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
          M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTSVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG 94
          TEGR+GHKFGEFA TRKRR+ +TNIGPG  KKG
Sbjct: 61 TEGRIGHKFGEFASTRKRRLSRTNIGPG--KKG 91

[Close]
BLAST of Lsi10G007350 vs. TAIR10
Match: AT5G47320.1 (AT5G47320.1 ribosomal protein S19)

HSP 1 Score: 120.9 bits (302), Expect = 1.3e-27
Identity = 58/77 (75.32%), Postives = 64/77 (83.12%), Query Frame = 1 

Query: 1   MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
           M  RS+WK  FVDAFL+K KN     LNRKIWSRRSTILPE+V ++VRIYNGKT VRCKI
Sbjct: 131 MMSRSVWKDPFVDAFLMKKKNA---ALNRKIWSRRSTILPEYVDSAVRIYNGKTHVRCKI 190

Query: 61  TEGRVGHKFGEFAMTRK 78
           TEG+VGHKFGEFA TRK
Sbjct: 191 TEGKVGHKFGEFAFTRK 204

[Close]
BLAST of Lsi10G007350 vs. NCBI nr
Match: gi|295311705|ref|YP_003587380.1| (ribosomal protein S19 [Cucurbita pepo])

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 1 

Query: 1   MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
           M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61  TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH 100
           TEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ + ++
Sbjct: 61  TEGRVGHKFGEFALTRKRRLSRTNIGPG-KKRGESQGAY 98

[Close]
BLAST of Lsi10G007350 vs. NCBI nr
Match: gi|295311704|ref|YP_003587364.1| (ribosomal protein S19 [Cucurbita pepo])

HSP 1 Score: 158.7 bits (400), Expect = 1.6e-35
Identity = 75/99 (75.76%), Postives = 88/99 (88.89%), Query Frame = 1 

Query: 1   MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
           M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKI
Sbjct: 1   MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61  TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDKKDSH 100
           TEGRVGHKFGEFA+TRKRR+ +TNIGPG +K+G+ + ++
Sbjct: 61  TEGRVGHKFGEFALTRKRRLSRTNIGPG-KKRGESQGAY 98

[Close]
BLAST of Lsi10G007350 vs. NCBI nr
Match: gi|295311661|ref|YP_003587264.1| (ribosomal protein S19 [Citrullus lanatus])

HSP 1 Score: 157.1 bits (396), Expect = 4.7e-35
Identity = 76/93 (81.72%), Postives = 83/93 (89.25%), Query Frame = 1 

Query: 1  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
          M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKTFVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG 94
          TEGRVGHKFGEFA+TRKRR+ +TNIGPG  KKG
Sbjct: 61 TEGRVGHKFGEFALTRKRRLSRTNIGPG--KKG 91

[Close]
BLAST of Lsi10G007350 vs. NCBI nr
Match: gi|316996013|dbj|BAD83473.2| (ribosomal protein S19 (mitochondrion) [Nicotiana tabacum])

HSP 1 Score: 154.5 bits (389), Expect = 3.0e-34
Identity = 76/95 (80.00%), Postives = 81/95 (85.26%), Query Frame = 1 

Query: 1  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
          M  RSIWK  FVDAFLL+MK K DP+ NRKIWSRRS+ILPEFV  SVRIYNGKTFVRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLFNRKIWSRRSSILPEFVDCSVRIYNGKTFVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKGDK 96
          TEG+VGHKFGEFA TRKRR  +TNIGPG RKKG K
Sbjct: 61 TEGKVGHKFGEFAFTRKRRPSRTNIGPG-RKKGKK 94

[Close]
BLAST of Lsi10G007350 vs. NCBI nr
Match: gi|295311660|ref|YP_003587230.1| (ribosomal protein S19 [Citrullus lanatus])

HSP 1 Score: 152.5 bits (384), Expect = 1.1e-33
Identity = 74/93 (79.57%), Postives = 81/93 (87.10%), Query Frame = 1 

Query: 1  MSPRSIWKSCFVDAFLLKMKNKIDPVLNRKIWSRRSTILPEFVGNSVRIYNGKTFVRCKI 60
          M  RSIWK  FVDAFLL+MK K DP+LNRKIWSRRS+ILPEFV +SVRIYNGKT VRCKI
Sbjct: 1  MPRRSIWKGSFVDAFLLRMKKKRDPLLNRKIWSRRSSILPEFVDSSVRIYNGKTSVRCKI 60

Query: 61 TEGRVGHKFGEFAMTRKRRVPKTNIGPGPRKKG 94
          TEGR+GHKFGEFA TRKRR+ +TNIGPG  KKG
Sbjct: 61 TEGRIGHKFGEFASTRKRRLSRTNIGPG--KKG 91

The following BLAST results are available for this feature:
BLAST of Lsi10G007350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RT19_PETHY3.0e-3476.84Ribosomal protein S19, mitochondrial OS=Petunia hybrida GN=RPS19 PE=2 SV=2[more]
RT19_ARATH2.3e-2675.3240S ribosomal protein S19, mitochondrial OS=Arabidopsis thaliana GN=RPS19 PE=1 S... [more]
RT19_MARPO9.7e-1757.14Ribosomal protein S19, mitochondrial OS=Marchantia polymorpha GN=RPS19 PE=3 SV=2[more]
RS19_RHILO3.1e-1547.9630S ribosomal protein S19 OS=Rhizobium loti (strain MAFF303099) GN=rpsS PE=3 SV=... [more]
RS19_BRUAB4.1e-1547.9630S ribosomal protein S19 OS=Brucella abortus biovar 1 (strain 9-941) GN=rpsS PE... [more]
BLAST of Lsi10G007350 vs. TrEMBL
Match NameE-valueIdentityDescription
D5I3G6_CUCPE1.1e-3575.76Ribosomal protein S19 OS=Cucurbita pepo GN=rps19-2 PE=3 SV=1[more]
D5I3F0_CUCPE1.1e-3575.76Ribosomal protein S19 OS=Cucurbita pepo GN=rps19-1 PE=3 SV=1[more]
D5I3D4_CITLA3.2e-3581.72Ribosomal protein S19 OS=Citrullus lanatus GN=rps19-2 PE=3 SV=1[more]
Q5MA05_TOBAC2.1e-3480.00Ribosomal protein S19 OS=Nicotiana tabacum GN=rps19 PE=3 SV=2[more]
D5I3A0_CITLA8.0e-3479.57Ribosomal protein S19 OS=Citrullus lanatus GN=rps19-1 PE=3 SV=1[more]
BLAST of Lsi10G007350 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G47320.11.3e-2775.32 ribosomal protein S19[more]
BLAST of Lsi10G007350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|295311705|ref|YP_003587380.1|1.6e-3575.76ribosomal protein S19 [Cucurbita pepo][more]
gi|295311704|ref|YP_003587364.1|1.6e-3575.76ribosomal protein S19 [Cucurbita pepo][more]
gi|295311661|ref|YP_003587264.1|4.7e-3581.72ribosomal protein S19 [Citrullus lanatus][more]
gi|316996013|dbj|BAD83473.2|3.0e-3480.00ribosomal protein S19 (mitochondrion) [Nicotiana tabacum][more]
gi|295311660|ref|YP_003587230.1|1.1e-3379.57ribosomal protein S19 [Citrullus lanatus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR023575Ribosomal_S19_SF
IPR020934Ribosomal_S19_CS
IPR002222Ribosomal_S19
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000028 ribosomal small subunit assembly
biological_process GO:0006412 translation
cellular_component GO:0009507 chloroplast
cellular_component GO:0022627 cytosolic small ribosomal subunit
cellular_component GO:0005739 mitochondrion
cellular_component GO:0005840 ribosome
molecular_function GO:0019843 rRNA binding
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003723 RNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi10G007350.1Lsi10G007350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002222Ribosomal protein S19/S15PRINTSPR00975RIBOSOMALS19coord: 63..78
score: 2.5E-15coord: 31..50
score: 2.5E-15coord: 51..63
score: 2.5
IPR002222Ribosomal protein S19/S15HAMAPMF_00531Ribosomal_S19coord: 2..93
score: 18
IPR002222Ribosomal protein S19/S15PANTHERPTHR11880RIBOSOMAL PROTEIN S19P FAMILY MEMBERcoord: 1..100
score: 2.5
IPR002222Ribosomal protein S19/S15PFAMPF00203Ribosomal_S19coord: 4..78
score: 1.1
IPR020934Ribosomal protein S19 conserved sitePROSITEPS00323RIBOSOMAL_S19coord: 51..75
scor
IPR023575Ribosomal protein S19, superfamilyGENE3DG3DSA:3.30.860.10coord: 3..82
score: 2.1
IPR023575Ribosomal protein S19, superfamilyunknownSSF54570Ribosomal protein S19coord: 4..80
score: 2.75
NoneNo IPR availablePANTHERPTHR11880:SF837S RIBOSOMAL PROTEIN S19, MITOCHONDRIALcoord: 1..100
score: 2.5

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi10G007350Cucurbita maxima (Rimu)cmalsiB508
Lsi10G007350Cucurbita maxima (Rimu)cmalsiB542
Lsi10G007350Cucurbita moschata (Rifu)cmolsiB492
Lsi10G007350Cucurbita moschata (Rifu)cmolsiB527
Lsi10G007350Cucurbita pepo (Zucchini)cpelsiB222
Lsi10G007350Cucurbita pepo (Zucchini)cpelsiB601
Lsi10G007350Melon (DHL92) v3.5.1lsimeB056
Lsi10G007350Watermelon (Charleston Gray)lsiwcgB056
Lsi10G007350Watermelon (97103) v1lsiwmB066
Lsi10G007350Cucumber (Gy14) v2cgyblsiB086
Lsi10G007350Melon (DHL92) v3.6.1lsimedB058
Lsi10G007350Silver-seed gourdcarlsiB656
Lsi10G007350Silver-seed gourdcarlsiB962
Lsi10G007350Cucumber (Chinese Long) v3cuclsiB106
Lsi10G007350Watermelon (97103) v2lsiwmbB053
Lsi10G007350Wax gourdlsiwgoB071