Lsi10G015940 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G015940
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Unknown protein
Location	chr10 : 20442391 .. 20442627 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGAGGCTAATTGTTGCTACCATCGGAGATGTTACCACGGTCAGCTCTGGAGGCTTATTTTTGTTTTCTCTCATTCTTTTATCCATCTCTCTCATGTCAATGATAATATTTGCTTGCGGCCACTCCCTTGATCCTAGGAGGAGAAGAGGCGGAGACGATGGTGGTGGAGGCGATGGATGTGGTGGCTGTGGCGGTGGAGGTTGTGGCGGCGGAGGAGGTGGCGGCGGAGACTAA

mRNA sequence

ATGGGGAGGCTAATTGTTGCTACCATCGGAGATGTTACCACGGTCAGCTCTGGAGGCTTATTTTTGTTTTCTCTCATTCTTTTATCCATCTCTCTCATGTCAATGATAATATTTGCTTGCGGCCACTCCCTTGATCCTAGGAGGAGAAGAGGCGGAGACGATGGTGGTGGAGGCGATGGATGTGGTGGCTGTGGCGGTGGAGGTTGTGGCGGCGGAGGAGGTGGCGGCGGAGACTAA

Coding sequence (CDS)

ATGGGGAGGCTAATTGTTGCTACCATCGGAGATGTTACCACGGTCAGCTCTGGAGGCTTATTTTTGTTTTCTCTCATTCTTTTATCCATCTCTCTCATGTCAATGATAATATTTGCTTGCGGCCACTCCCTTGATCCTAGGAGGAGAAGAGGCGGAGACGATGGTGGTGGAGGCGATGGATGTGGTGGCTGTGGCGGTGGAGGTTGTGGCGGCGGAGGAGGTGGCGGCGGAGACTAA

Protein sequence

MGRLIVATIGDVTTVSSGGLFLFSLILLSISLMSMIIFACGHSLDPRRRRGGDDGGGGDGCGGCGGGGCGGGGGGGGD

Homology

[Close]

BLAST of Lsi10G015940 vs. TrEMBL
Match: A0A0A0LJD5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G062640 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.1e-11
Identity = 59/78 (75.64%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 1  MGRLIVATIGDVTTVSSGGLFLFSLILLSISLMSMIIFACGHSLDPRRRRGGDDGGGGDG 60
          MGR I ATIGDVTT   GGL L SLILLSISL+SMIIFAC +  + RRRRGGDDGG G G
Sbjct: 1  MGRPIAATIGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGGAG-G 60

Query: 61 CGGCGGGGCGGGGGGGGD 79
          C  CGGGGCGGGG GGGD
Sbjct: 61 C-ACGGGGCGGGGCGGGD 76

[Close]

BLAST of Lsi10G015940 vs. NCBI nr
Match: gi|700206070|gb|KGN61189.1| (hypothetical protein Csa_2G062640 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.6e-11
Identity = 59/78 (75.64%), Postives = 62/78 (79.49%), Query Frame = 1


Query: 1  MGRLIVATIGDVTTVSSGGLFLFSLILLSISLMSMIIFACGHSLDPRRRRGGDDGGGGDG 60
          MGR I ATIGDVTT   GGL L SLILLSISL+SMIIFAC +  + RRRRGGDDGG G G
Sbjct: 1  MGRPIAATIGDVTTSIPGGLSLLSLILLSISLLSMIIFACSNFFNTRRRRGGDDGGAG-G 60

Query: 61 CGGCGGGGCGGGGGGGGD 79
          C  CGGGGCGGGG GGGD
Sbjct: 61 C-ACGGGGCGGGGCGGGD 76

The following BLAST results are available for this feature:

BLAST of Lsi10G015940 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi10G015940 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LJD5_CUCSA	1.1e-11	75.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G062640 PE=4 SV=1	[more]

BLAST of Lsi10G015940 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi10G015940 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700206070\|gb\|KGN61189.1\|	1.6e-11	75.64	hypothetical protein Csa_2G062640 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi10G015940.1	Lsi10G015940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35420	FAMILY NOT NAMED	coord: 2..77 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi10G015940	Wax gourd	lsiwgoB068
Lsi10G015940	Cucumber (Gy14) v1	cgylsiB625
Lsi10G015940	Cucurbita maxima (Rimu)	cmalsiB088
Lsi10G015940	Cucurbita maxima (Rimu)	cmalsiB195
Lsi10G015940	Cucurbita maxima (Rimu)	cmalsiB471
Lsi10G015940	Cucurbita maxima (Rimu)	cmalsiB506
Lsi10G015940	Cucurbita maxima (Rimu)	cmalsiB541
Lsi10G015940	Cucurbita moschata (Rifu)	cmolsiB078
Lsi10G015940	Cucurbita moschata (Rifu)	cmolsiB456
Lsi10G015940	Cucurbita moschata (Rifu)	cmolsiB490
Lsi10G015940	Cucurbita moschata (Rifu)	cmolsiB526
Lsi10G015940	Cucurbita pepo (Zucchini)	cpelsiB198
Lsi10G015940	Cucurbita pepo (Zucchini)	cpelsiB219
Lsi10G015940	Cucurbita pepo (Zucchini)	cpelsiB523
Lsi10G015940	Cucurbita pepo (Zucchini)	cpelsiB599
Lsi10G015940	Wild cucumber (PI 183967)	cpilsiB419
Lsi10G015940	Cucumber (Chinese Long) v2	culsiB416
Lsi10G015940	Melon (DHL92) v3.5.1	lsimeB049
Lsi10G015940	Watermelon (Charleston Gray)	lsiwcgB051
Lsi10G015940	Watermelon (Charleston Gray)	lsiwcgB054
Lsi10G015940	Watermelon (97103) v1	lsiwmB073
Lsi10G015940	Watermelon (97103) v1	lsiwmB078
Lsi10G015940	Cucumber (Gy14) v2	cgyblsiB381
Lsi10G015940	Melon (DHL92) v3.6.1	lsimedB051
Lsi10G015940	Silver-seed gourd	carlsiB027
Lsi10G015940	Silver-seed gourd	carlsiB377
Lsi10G015940	Silver-seed gourd	carlsiB483
Lsi10G015940	Cucumber (Chinese Long) v3	cuclsiB442
Lsi10G015940	Watermelon (97103) v2	lsiwmbB052
Lsi10G015940	Watermelon (97103) v2	lsiwmbB050