Lsi11G008820 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi11G008820
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Retrotransposon protein
Location	chr11 : 11601575 .. 11604791 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGGTTCTTTTTTCATGTGAAGCATGCGATTTCAATCTTGATCTTCATTTGTTTTCTATTTTTTCTTTGGTCTTCTCTTAGATTTGCATGTTATAGATATGTTGTTGTGGTGTTCTTGGTGTGTATGCTTCAAATCTATTTTTATCTGGTCTTGGCCTTCGTTTGAATGTTTCAGATCTGTTGTTCTTTGGTTTTGTCGGGAACAAAGATACCATCTGACCGAATGGCAAGGAGGGAACCCACCCATGAGTCCTAAATAACCTTTTAACATGAGACATTCTCTACACGAAACGTGATCGAAAGAACGTTTGGAATGTTGAAAGGTCGATGGGTCATACTTCGAGGAAAATCAAACTAGCTTGTTGATGTGCAGTGCAAAACAATACATGTTTGTTGTCTCGTGCACAATTTGATCATTTAGAGATGACTCGACATTTGAAGAAGGTAAGGGAAGTCAAAGCGGAACAATTAGAATGAATGTAGACAATATTGAATTTGTGGAGACATTGGATGTATGGACTGAATCGAAGGATCATCTTGCAAATCAGATGTAAGTTGAATGGAATGCAGACTAACAGCCTAGTGGTTATATGCATTACTTTTTTTTACTTTCTTTTTTTGGAATGATGGTGAACATATAATCTGTATTTTGTTGCTTTATAAGCATGTGAGGTATAGATACAGGTGTACATTTTTTGGCTAACTTATGTAAATATAGTTAGATATAGTGTGGTACATTTTTGGGTCACTTATGTGAATAATGGATTAATACGTATTATGCGAATTGAAGAATGGACTAATGTGTTTTATGTAAATATAGTTGATCACACTACACCGTTTTGAAAAGGTACATTATGTGAATATGTATTATTTTAGATGGAAGCATCGAGTTCGAGATCTAGAGCCTCTAAACATTTATGGACAAACGACGAGGACAAGGTTCGGGTAGAATGTATGGTACAATATGTGCAGTCTGGCAGCTGGCGTGCTGGCAACGACACATTTCGACCTTGTTTTTTGGCAAATGTGCTGAGGATGATGCAACAAAAAACTTCCAGGGTGTTCCATACAAGCAGACCCCAATCTGCAGTCGAGGGTGAGGACGCTGAAAAGACAATACAGTGCAATCACAAAAAGCATGGGGCAAGGATGTAGTGGGTTTGGTTGGAACACAGAGTGAAAATGTATTGACTGTAAGCCCAAGATATTTGAGGTTGGGTCAGGGTAAGGAAAAAATTTAAAATTTTTGTTTATATTATTTTAAATATATTTTATAAGACACATAACACATTTCATACCATGTAGAGTTATCCAAATATTAATGGACTCATACATAAGTCCTTCTACTGTAAGATGATTTAGCGATTGTCTTTGGCAAAGACAGAACTACAGGGGGATGCGCCATTACCTCAACTGCTGTTGGATTGAAACTTGCAGTGGACAAGGACAATGACGGTGATTTAAATAACCAGTCTCCAAACGTTGAAAATTTCTACATCCTTGATCCACCGTTTGTAGAATCGCCAATACCAGAGAACCTTCCAACTACCTCGGGTAGTAGAGAGGCTGGGACTAGCGCACTGAGACAAGAAGTAAGAGGTGTCGGTCATCAACTAGATAATACAATGATGTGTTACGAGAGGGGTTTTAGCTTTTAACTTGGTCTATTGGTAGGATTGCACAATGCCTAACGTGAAGGATGGCCTTGCAAGGTGTCATCGTTGAGAATTGTACATCGAGCCACAGTCAATCCCTAGACTATCAATGCAAGACGACTTAGTGATAGCACGTTCATTGCTTGTAGATCCTATGTTGTTGAGTCATCTTATGGACTTCTTAGTGTAATGGAAACATGATTATTGCATGGAAGTCCTTGATGACCTCAGAATGAAACACCTTGACCCTCCTTCACTTAACCCTGGATTATTGCATGTGTTTGTTAGGAAAAATTATCTTGTTTGTATGAACAACTTTATTTTTGGTTCCATACGTTTTATACGAGTTGTTTGGATTTTTGCTTATGTTTTATGCTTATGTTTTAATTTTATCTGTTAGGATGTTTCATTTGCAAAGTAATTTCAATCCCTATTCTAAAGTTCATGAAATTTATGGTTTAAATAATATCACAAACTTAGGTCATATAATGTAGAAAACAAATATAAAAAAAATAGTCAAAATAATAATAATATAAATAGTCAAACCAAGCCCAAACTCAACCCTGCAATCCAAATACAGTAATCAGAAACACAACAAACTCAACCCTGCACTCCAAACACTGTAATTAGATTCTTAATAATCCTGATTATAGTTTAGCTCTCCAAACAGCCCCTAAAATGTTTAACATGTACTTTTTGTTTTTTGCAACAACATATAGATATTAATTGCTCCAGCTTTTTATTCACATTTCCCCACATTCAAGTAATACAATGTGGCAATTGTTCTATGAGATGGAAGGGGAAGTGGTAGCGATTCACTGGTATGTACGGTTGTCCTGAAGGCCAGAATAAGAGGCTTACTTGTGATCTTTTCAAACGGCTGTATAATAATGACGACTCAGCTTGGCTGATTGAGGGTGATCTGAGCGAGGCCTTATGGCCTAGGGAGCAAAATGGAGGTTCTACTAGGAACAATGTGAATGCTGAGCGGTTTTGAGATACTGTTTTTTATGTAAATTTGAAGGATTTGGGATATTGGGAAGACCTTTCACTTGGTCCAATAAATGGACCAATTGTCGGCCAATTTTGAAACGTCTGGATAGGTTCATGGGTCACGATGAGTTTATGGATCGCTTCCCATGATTGAAGGCTTACCATTTAGGATGGTACTCGTCGGACTACCATCCCATTTGCTTTGATGGTTGTGCAAATAATAATCTTGTGTATGGAGGAAGGAAGCAACACATCTTTAGGTTGGAAGCAATGTGGCTTCGGGATAATGAATGTGAGAACATTATTCACCAATGTCGGGAGGATAATGTTGGCTGTGGGGTGCAAAGTATGAGTGCTGGTGATAATCTTCGTTTGGTCGTTGATTCTTGCAGGAATCAACTCAACTATGAGGGAGGATTAAGACTCATAATTTTTTCAAAGAGGTGGCTGAATTGCAGGGAAAAATTATTCAAGCTATGGATGATGTAAATGGTCTTGATTTTACTATTATTCATAGTCTTAAGAAGAAGTTGGAGGAGGTTCAGAAGTTAGAGGAGATTTATTAG

mRNA sequence

ATGATGATGGAAGCATCGAGTTCGAGATCTAGAGCCTCTAAACATTTATGGACAAACGACGAGGACAAGGTTCGGGTAGAATGTATGGTACAATATGTGCAGTCTGGCAGCTGGCGTGCTGGCAACGACACATTTCGACCTTGTTTTTTGGCAAATGTGCTGAGGATGATGCAACAAAAAACTTCCAGGTCTCCAAACGTTGAAAATTTCTACATCCTTGATCCACCGTTTGTAGAATCGCCAATACCAGAGAACCTTCCAACTACCTCGGGTAGTAGAGAGGCTGGGACTAGCGCACTGAGACAAGAAGATTGCACAATGCCTAACGTGAAGGATGGCCTTGCAAGATCCTATGTTGTTGAGTCATCTTATGGACTTCTTAGTGCTTACCATTTAGGATGGTACTCGTCGGACTACCATCCCATTTGCTTTGATGGTTGTGCAAATAATAATCTTGTGTATGGAGGAAGGAAGCAACACATCTTTAGGTTGGAAGCAATGTGGCTTCGGGATAATGAATGTGAGAACATTATTCACCAATGTCGGGAGGATAATGTTGGCTGTGGGGTGCAAAGTATGAGTGCTGGTGATAATCTTCGTTTGGGAAAAATTATTCAAGCTATGGATGATGTAAATGGTCTTGATTTTACTATTATTCATAGTCTTAAGAAGAAGTTGGAGGAGGTTCAGAAGTTAGAGGAGATTTATTAG

Coding sequence (CDS)

ATGATGATGGAAGCATCGAGTTCGAGATCTAGAGCCTCTAAACATTTATGGACAAACGACGAGGACAAGGTTCGGGTAGAATGTATGGTACAATATGTGCAGTCTGGCAGCTGGCGTGCTGGCAACGACACATTTCGACCTTGTTTTTTGGCAAATGTGCTGAGGATGATGCAACAAAAAACTTCCAGGTCTCCAAACGTTGAAAATTTCTACATCCTTGATCCACCGTTTGTAGAATCGCCAATACCAGAGAACCTTCCAACTACCTCGGGTAGTAGAGAGGCTGGGACTAGCGCACTGAGACAAGAAGATTGCACAATGCCTAACGTGAAGGATGGCCTTGCAAGATCCTATGTTGTTGAGTCATCTTATGGACTTCTTAGTGCTTACCATTTAGGATGGTACTCGTCGGACTACCATCCCATTTGCTTTGATGGTTGTGCAAATAATAATCTTGTGTATGGAGGAAGGAAGCAACACATCTTTAGGTTGGAAGCAATGTGGCTTCGGGATAATGAATGTGAGAACATTATTCACCAATGTCGGGAGGATAATGTTGGCTGTGGGGTGCAAAGTATGAGTGCTGGTGATAATCTTCGTTTGGGAAAAATTATTCAAGCTATGGATGATGTAAATGGTCTTGATTTTACTATTATTCATAGTCTTAAGAAGAAGTTGGAGGAGGTTCAGAAGTTAGAGGAGATTTATTAG

Protein sequence

MMMEASSSRSRASKHLWTNDEDKVRVECMVQYVQSGSWRAGNDTFRPCFLANVLRMMQQKTSRSPNVENFYILDPPFVESPIPENLPTTSGSREAGTSALRQEDCTMPNVKDGLARSYVVESSYGLLSAYHLGWYSSDYHPICFDGCANNNLVYGGRKQHIFRLEAMWLRDNECENIIHQCREDNVGCGVQSMSAGDNLRLGKIIQAMDDVNGLDFTIIHSLKKKLEEVQKLEEIY

Homology

[Close]

BLAST of Lsi11G008820 vs. TrEMBL
Match: E5GCB5_CUCME (Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 27/57 (47.37%), Postives = 36/57 (63.16%), Query Frame = 1


Query: 4   EASSSRSRASKHLWTNDEDKVRVECMVQYVQSGSWRAGNDTFRPCFLANVLRMMQQK 61
           E  +S SR  KH WT +E+   VEC+V+ V +G WR+ N TFRP +L  + RMM  K
Sbjct: 354 EIMTSSSRLPKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPGYLNQLARMMAFK 410

[Close]

BLAST of Lsi11G008820 vs. NCBI nr
Match: gi|659111294|ref|XP_008455678.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 68.2 bits (165), Expect = 2.2e-08
Identity = 27/59 (45.76%), Postives = 42/59 (71.19%), Query Frame = 1


Query: 6  SSSRSRASKHLWTNDEDKVRVECMVQYVQSGSWRAGNDTFRPCFLANVLRMMQQKTSRS 65
          +S+ S+A+KH WT  +D   VEC++Q V+ G WRA N+TF+P +L  V ++M++K  RS
Sbjct: 34 ASTNSKATKHRWTTIKDDALVECLLQLVEEGGWRANNETFKPRYLVQVQKLMKEKIPRS 92

[Close]

BLAST of Lsi11G008820 vs. NCBI nr
Match: gi|659082641|ref|XP_008441954.1| (PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo])

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-07
Identity = 28/54 (51.85%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 7  SSRSRASKHLWTNDEDKVRVECMVQYVQSGSWRAGNDTFRPCFLANVLRMMQQK 61
          +S SRA KH WT +E++  VEC+V+ V SG WR+ N TF+P +LA + RMM +K
Sbjct: 2  ASLSRAPKHTWTKEEEEKFVECLVELVSSGGWRSDNGTFQPGYLAQLQRMMAEK 55

[Close]

BLAST of Lsi11G008820 vs. NCBI nr
Match: gi|659113923|ref|XP_008456820.1| (PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo])

HSP 1 Score: 62.0 bits (149), Expect = 1.6e-06
Identity = 26/54 (48.15%), Postives = 37/54 (68.52%), Query Frame = 1


Query: 7  SSRSRASKHLWTNDEDKVRVECMVQYVQSGSWRAGNDTFRPCFLANVLRMMQQK 61
          +S SRA+KH WT +E+   VEC+V+ V +G WR+ N TFR  +L  + RMM +K
Sbjct: 2  ASSSRATKHAWTKEEEAKLVECLVELVSAGGWRSDNGTFRHGYLTQLQRMMAEK 55

[Close]

BLAST of Lsi11G008820 vs. NCBI nr
Match: gi|659126986|ref|XP_008463462.1| (PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 2.1e-06
Identity = 27/54 (50.00%), Postives = 36/54 (66.67%), Query Frame = 1


Query: 7   SSRSRASKHLWTNDEDKVRVECMVQYVQSGSWRAGNDTFRPCFLANVLRMMQQK 61
           +S SR SKH WT +E+   VEC+V+ V +G WR+ N TFRP +L  + RMM  K
Sbjct: 343 TSSSRLSKHTWTKEEEAGLVECLVELVNAGGWRSDNGTFRPEYLNQLARMMAFK 396

[Close]

BLAST of Lsi11G008820 vs. NCBI nr
Match: gi|659118456|ref|XP_008459129.1| (PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 2.1e-06
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1


Query: 2   MMEASSSRSRASKHLWTNDEDKVRVECMVQYVQSGSWRAGNDTFRPCFLANVLRMMQQK 61
           + E  +S SR  KH WT +E+   VEC+V+ V +G WR+ N TFRP +L  + RMM  K
Sbjct: 198 LQECMASSSRLPKHNWTKEEEAGLVECLVELVNAGGWRSDNGTFRPRYLNQLARMMAFK 256

The following BLAST results are available for this feature:

BLAST of Lsi11G008820 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi11G008820 vs. TrEMBL


Match Name	E-value	Identity	Description
E5GCB5_CUCME	1.9e-06	47.37	Retrotransposon protein OS=Cucumis melo subsp. melo PE=4 SV=1	[more]

BLAST of Lsi11G008820 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi11G008820 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659111294\|ref\|XP_008455678.1\|	2.2e-08	45.76	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|659082641\|ref\|XP_008441954.1\|	1.1e-07	51.85	PREDICTED: uncharacterized protein At2g29880-like [Cucumis melo]	[more]
gi\|659113923\|ref\|XP_008456820.1\|	1.6e-06	48.15	PREDICTED: uncharacterized protein LOC103496659 [Cucumis melo]	[more]
gi\|659126986\|ref\|XP_008463462.1\|	2.1e-06	50.00	PREDICTED: uncharacterized protein LOC103501629 [Cucumis melo]	[more]
gi\|659118456\|ref\|XP_008459129.1\|	2.1e-06	45.76	PREDICTED: uncharacterized protein LOC103498329 [Cucumis melo]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi11G008820.1	Lsi11G008820.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi11G008820	Cla97C11G216800	Watermelon (97103) v2	lsiwmbB078

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi11G008820	Wax gourd	lsiwgoB110
Lsi11G008820	Cucumber (Gy14) v1	cgylsiB300
Lsi11G008820	Cucurbita maxima (Rimu)	cmalsiB154
Lsi11G008820	Cucurbita maxima (Rimu)	cmalsiB709
Lsi11G008820	Cucurbita moschata (Rifu)	cmolsiB143
Lsi11G008820	Cucurbita moschata (Rifu)	cmolsiB703
Lsi11G008820	Cucurbita pepo (Zucchini)	cpelsiB070
Lsi11G008820	Cucurbita pepo (Zucchini)	cpelsiB654
Lsi11G008820	Wild cucumber (PI 183967)	cpilsiB096
Lsi11G008820	Cucumber (Chinese Long) v2	culsiB098
Lsi11G008820	Melon (DHL92) v3.5.1	lsimeB115
Lsi11G008820	Watermelon (Charleston Gray)	lsiwcgB083
Lsi11G008820	Watermelon (97103) v1	lsiwmB110
Lsi11G008820	Cucumber (Gy14) v2	cgyblsiB089
Lsi11G008820	Melon (DHL92) v3.6.1	lsimedB123
Lsi11G008820	Silver-seed gourd	carlsiB148
Lsi11G008820	Silver-seed gourd	carlsiB655
Lsi11G008820	Cucumber (Chinese Long) v3	cuclsiB108