Lsi11G012560 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi11G012560
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionExpansin-like A1
Locationchr11 : 21180286 .. 21181790 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAATTGTTTAGTGTATTAATTAATTATAATATATTTGTAGGTAAGATGCAAAAATAGAAGGCTTTGCAATACAGTAGGAACTAAGGTGGTATTGACAGATCAAAATAGTGATAATGTAACAGACCTTGTTCTTAGTCCAAAGGCTTTCTTTACCATGGCTCTCAATGGTAAAGGTGCAGATCTTTTGAATCTTGGAGTGGTTGATGTTGAATATAAGAGGTGAGCTTTCAAATATTTCAGATTTTTTTTTTTTTTTTTTTTAAAAAAAAAAGATACTTAAATTATTATTTTGGTCCTGTATTTTAGAGTTATTTAATTTCAGTTCTTATACTTTTTCAAATGTCCAATTTTAATCCATATAGTTTTAATAAATCTTAAGTTTAGTCTCTATTGCTGGTTGATTTTTTCAGAAAAAAAAAGGGTCTATTGGTATTTTCACTATAAATGAAACATATTCACATATACGGTATTTTTTGCTTAAAAATTATTATTATTGTTATTATTATTATTATTTAACCAATTTCAATTTTAAAAAATTACTTTGAGAGACTAAATTTAAGATTACTTAAACTGAACTTAGACATTAGATCAACATACAATGATTAAAGTTGAACAAACTCCAAAGTACATGGAGCATAATGATATTTTAACCTAAAAAAGAATAGTATCCCTAAACTTTCTCCATTATTTTAAAGACAATACCTTTATTCTTTCAAAAGTTACAATACGTTATCCTTGATCTTTTATATAAACATTTTAAAACTATCCTTAAAATATAAATTTTTAGAATAGTGAACAGAAAATCGTCAACATAGTGAATAAGACCCTTGCTTGGATTAAGTCAATAAGAAAGACATTCAGACACACATTGATTTTTCATCCAACTTTCTAAGAAGCATTTTTTAAATGTTTATAAAAGGTGTAAAAGATATTATATATAGCAACTTTTGAAAGAATCACAATACTTTTTAGACCCATAAGGCAAAGTTTAGGGTTAGCTTTTTAAATATAAAATTCAGCTAATATTTTAATGATCTATAACAACACTTTACCCTAAATATTTTAATGTTAATGAAATCAAAACATATATATATGTATCTTCTTTTGTTTTGGTAGGGTGCCATGTGAATATCCAAATAGAAATTTGTTGGTGAGAGTGGAAGAATCAAGTTACAATCCATTCAAGTTGGCAATTAAATACTTCTATCAAGGTGGCCAAACAGACATGGTTGCTGTTGATGTAGCTCAAGTTGGAACCTCAGATTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGAAACAGATAATGTACCTGAAGGTGCATTACAATTGAGAATGGTGGTCACTTCTGGATACGATGGAAAATGGATTTGGGCAAAGTCCGTACTTCCTGCTAATTGGAGAGCTGGAGCGGTCTACGATACTGGAGTTCAAATCAACGATATTGCCAAAGAGAGCTGCCCTCCTTGGCAATGTGGTGATGCGCAATGGAAATAA

mRNA sequence

ATGGTAATTGTAAGATGCAAAAATAGAAGGCTTTGCAATACAGTAGGAACTAAGGTGGTATTGACAGATCAAAATAGTGATAATGTAACAGACCTTGTTCTTAGTCCAAAGGCTTTCTTTACCATGGCTCTCAATGGTAAAGGTGCAGATCTTTTGAATCTTGGAGTGGTTGATGTTGAATATAAGAGGGTGCCATGTGAATATCCAAATAGAAATTTGTTGGTGAGAGTGGAAGAATCAAGTTACAATCCATTCAAGTTGGCAATTAAATACTTCTATCAAGGTGGCCAAACAGACATGGTTGCTGTTGATGTAGCTCAAGTTGGAACCTCAGATTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGAAACAGATAATGTACCTGAAGGTGCATTACAATTGAGAATGGTGGTCACTTCTGGATACGATGGAAAATGGATTTGGGCAAAGTCCGTACTTCCTGCTAATTGGAGAGCTGGAGCGGTCTACGATACTGGAGTTCAAATCAACGATATTGCCAAAGAGAGCTGCCCTCCTTGGCAATGTGGTGATGCGCAATGGAAATAA

Coding sequence (CDS)

ATGGTAATTGTAAGATGCAAAAATAGAAGGCTTTGCAATACAGTAGGAACTAAGGTGGTATTGACAGATCAAAATAGTGATAATGTAACAGACCTTGTTCTTAGTCCAAAGGCTTTCTTTACCATGGCTCTCAATGGTAAAGGTGCAGATCTTTTGAATCTTGGAGTGGTTGATGTTGAATATAAGAGGGTGCCATGTGAATATCCAAATAGAAATTTGTTGGTGAGAGTGGAAGAATCAAGTTACAATCCATTCAAGTTGGCAATTAAATACTTCTATCAAGGTGGCCAAACAGACATGGTTGCTGTTGATGTAGCTCAAGTTGGAACCTCAGATTGGAGCCATATGAAGAGAAGTTATGGAGCTGTTTGGGAAACAGATAATGTACCTGAAGGTGCATTACAATTGAGAATGGTGGTCACTTCTGGATACGATGGAAAATGGATTTGGGCAAAGTCCGTACTTCCTGCTAATTGGAGAGCTGGAGCGGTCTACGATACTGGAGTTCAAATCAACGATATTGCCAAAGAGAGCTGCCCTCCTTGGCAATGTGGTGATGCGCAATGGAAATAA

Protein sequence

MVIVRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYKRVPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYGAVWETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCPPWQCGDAQWK
Homology
[Close]
BLAST of Lsi11G012560 vs. Swiss-Prot
Match: EXLA2_ARATH (Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 237.7 bits (605), Expect = 1.1e-61
Identity = 116/188 (61.70%), Postives = 139/188 (73.94%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGAD--LLNLGVVDVEY 63
           VRCKN  LC++ GT V++TD N  N TDLVLS +AF  MA    GAD  LL  G+VD+EY
Sbjct: 79  VRCKNPTLCSSKGTTVIVTDLNKTNQTDLVLSSRAFRAMAKPVVGADRDLLKQGIVDIEY 138

Query: 64  KRVPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYG 123
           +RVPC+Y N+ + VRVEESS NP  LAIK  YQGGQT++VA+ +AQVG+S WS+M RS+G
Sbjct: 139 RRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGSSHWSYMTRSHG 198

Query: 124 AVWETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCPP 183
           AVW TD VP GALQ R VVT+GYDGK +W++ VLPANW AG  YD GVQI DIA+E C P
Sbjct: 199 AVWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAGKSYDAGVQITDIAQEGCDP 258

Query: 184 WQCGDAQW 190
             C D  W
Sbjct: 259 --CDDHIW 264

[Close]
BLAST of Lsi11G012560 vs. Swiss-Prot
Match: EXLA1_ARATH (Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 4.5e-60
Identity = 110/181 (60.77%), Postives = 138/181 (76.24%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMA--LNGKGADLLNLGVVDVEY 63
           VRCKN +LC+T GT V++TD N  N TDLVLS +AF  MA  + G   DLL  G+VD+EY
Sbjct: 78  VRCKNPKLCSTKGTIVMITDLNKSNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEY 137

Query: 64  KRVPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTS-DWSHMKRSY 123
           +RVPC+Y N+N+ VRVEE+S  P  L IK  YQGGQT++V++D+AQVG+S +W +M RS+
Sbjct: 138 QRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSH 197

Query: 124 GAVWETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCP 182
           GAVW TD VP GA+Q R VVT GYDGK IW++SVLP+NW AG +YD GVQI DIA+E C 
Sbjct: 198 GAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAGKIYDAGVQITDIAQEGCD 257

[Close]
BLAST of Lsi11G012560 vs. Swiss-Prot
Match: EXLA3_ARATH (Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1)

HSP 1 Score: 230.3 bits (586), Expect = 1.7e-59
Identity = 110/178 (61.80%), Postives = 132/178 (74.16%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGAD--LLNLGVVDVEY 63
           VRCKN +LCN+ GT V++TD N+ N TDLVLS +AF  MA    G D  LL  G+VDVEY
Sbjct: 78  VRCKNPKLCNSKGTIVMVTDLNTSNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEY 137

Query: 64  KRVPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYG 123
           +RVPC Y  RNL VRVEE+S  P  LAIK  YQGGQT++V +D+A VG+S WS+M RS+G
Sbjct: 138 QRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHG 197

Query: 124 AVWETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESC 180
           AVW TD VP GALQ +  VT GYDGK +W+K VLPANW +G +YD GVQI DIA+E C
Sbjct: 198 AVWATDKVPTGALQFKFTVTGGYDGKTVWSKRVLPANWNSGRIYDAGVQITDIAQEGC 255

[Close]
BLAST of Lsi11G012560 vs. Swiss-Prot
Match: EXLA1_ORYSJ (Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.5e-58
Identity = 110/188 (58.51%), Postives = 131/188 (69.68%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYKR 63
           VRCK+++LC+  G +VV+TD+   N T LVLS  AF  MA  G  A L  L  VDVEYKR
Sbjct: 94  VRCKDKKLCSNAGARVVVTDRARTNRTGLVLSSPAFAAMARPGMAASLTELAAVDVEYKR 153

Query: 64  VPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYGAV 123
           VPCEY +R+L VRV+E S  P +L I + YQGGQTD+VAVDVAQVG+S W  M R +G  
Sbjct: 154 VPCEYRHRSLSVRVDERSRGPNELTISFLYQGGQTDIVAVDVAQVGSSSWKFMTREHGPS 213

Query: 124 WETDNVPEGALQLRMVVTSGYDGKWIWA-KSVLPANWRAGAVYDTGVQINDIAKESCPPW 183
           W   N P G LQ+R+VVT GYDGKW+WA + VLP  WRAG VYDTGVQI DIA+E C P 
Sbjct: 214 WSMANAPPGPLQMRLVVTGGYDGKWVWADREVLPRRWRAGEVYDTGVQITDIAQEGCFP- 273

Query: 184 QCGDAQWK 191
            C   +WK
Sbjct: 274 -CDTHEWK 279

[Close]
BLAST of Lsi11G012560 vs. Swiss-Prot
Match: EXLA2_ORYSJ (Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 8.8e-56
Identity = 110/190 (57.89%), Postives = 129/190 (67.89%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQ-NSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYK 63
           VRCK+ +LC+T G KVV+TD+  S N TDLVLS  A+  MA  G  A L     VDVEYK
Sbjct: 88  VRCKDGKLCSTAGAKVVVTDEARSTNRTDLVLSAAAYAAMARPGMAAQLRTRRAVDVEYK 147

Query: 64  RVPCEYP-NRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYG 123
           RVPCEY   RNL +RVEE S  P +L+I++ YQGGQTD+VAVDVA VG+S+W  M R YG
Sbjct: 148 RVPCEYAAGRNLSIRVEEKSRPPRELSIRFLYQGGQTDIVAVDVATVGSSNWKFMTRDYG 207

Query: 124 AVWETDNVPEGALQLRMVVTSGYDGKWIWAK-SVLPANWRAGAVYDTGVQINDIAKESCP 183
             W T   P G LQ R+VVT GYDGKW+WA   VLP  W AG VYD GVQI D+A+E C 
Sbjct: 208 PAWSTAQAPAGPLQFRVVVTGGYDGKWVWADGEVLPRRWTAGRVYDAGVQIADVAQEGCY 267

Query: 184 PWQCGDAQWK 191
           P  C   +WK
Sbjct: 268 P--CDTQEWK 275

[Close]
BLAST of Lsi11G012560 vs. TrEMBL
Match: V4SA67_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029088mg PE=3 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 1.3e-69
Identity = 122/187 (65.24%), Postives = 147/187 (78.61%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYKR 63
           +RCKN  LC+  GT+V+LTD N  N TD V+S +AF  ++  GKG D+L LGVVDVEYKR
Sbjct: 75  MRCKNPTLCSGKGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 134

Query: 64  VPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYGAV 123
           VPCEY N+NL VRVEESS  P  LA+K  YQGGQT+MVA+DVAQVG+S+W +M R+YGAV
Sbjct: 135 VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 194

Query: 124 WETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCPPWQ 183
           W+T  VP GALQ R VVTSGYDGKWIWAK+VLPA+W+ G +Y++GVQI DIAKE C   +
Sbjct: 195 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESE 254

Query: 184 CGDAQWK 191
           CGD  WK
Sbjct: 255 CGDGSWK 261

[Close]
BLAST of Lsi11G012560 vs. TrEMBL
Match: A0A067FLN8_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024895mg PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.7e-69
Identity = 122/187 (65.24%), Postives = 147/187 (78.61%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYKR 63
           +RCKN  LC+  GT+V+LTD N  N TD V+S +AF  ++  GKG D+L LGVVDVEYKR
Sbjct: 75  MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 134

Query: 64  VPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYGAV 123
           VPCEY N+NL VRVEESS  P  LA+K  YQGGQT+MVA+DVAQVG+S+W +M R+YGAV
Sbjct: 135 VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 194

Query: 124 WETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCPPWQ 183
           W+T  VP GALQ R VVTSGYDGKWIWAK+VLPA+W+ G +Y++GVQI DIAKE C   +
Sbjct: 195 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESE 254

Query: 184 CGDAQWK 191
           CGD  WK
Sbjct: 255 CGDGSWK 261

[Close]
BLAST of Lsi11G012560 vs. TrEMBL
Match: A0A067FLH7_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024895mg PE=3 SV=1)

HSP 1 Score: 270.4 bits (690), Expect = 1.7e-69
Identity = 122/187 (65.24%), Postives = 147/187 (78.61%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYKR 63
           +RCKN  LC+  GT+V+LTD N  N TD V+S +AF  ++  GKG D+L LGVVDVEYKR
Sbjct: 1   MRCKNPTLCSGRGTRVILTDLNHSNQTDFVISSRAFMALSNQGKGQDILKLGVVDVEYKR 60

Query: 64  VPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYGAV 123
           VPCEY N+NL VRVEESS  P  LA+K  YQGGQT+MVA+DVAQVG+S+W +M R+YGAV
Sbjct: 61  VPCEYKNQNLAVRVEESSQKPNYLAVKVLYQGGQTEMVAMDVAQVGSSNWGYMSRNYGAV 120

Query: 124 WETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCPPWQ 183
           W+T  VP GALQ R VVTSGYDGKWIWAK+VLPA+W+ G +Y++GVQI DIAKE C   +
Sbjct: 121 WDTSRVPNGALQFRFVVTSGYDGKWIWAKNVLPADWKPGMIYNSGVQITDIAKEGCSESE 180

Query: 184 CGDAQWK 191
           CGD  WK
Sbjct: 181 CGDGSWK 187

[Close]
BLAST of Lsi11G012560 vs. TrEMBL
Match: A0A0B0P1I4_GOSAR (Expansin-like A1 OS=Gossypium arboreum GN=F383_05840 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.4e-68
Identity = 119/186 (63.98%), Postives = 147/186 (79.03%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYKR 63
           +RCK+ +LC++ GTKV LTD N +N TD VL+ +AF  MA  GKG D+L LG+VDVEYKR
Sbjct: 77  IRCKDSKLCSSKGTKVTLTDLNHNNQTDFVLTSRAFMAMANKGKGQDVLKLGIVDVEYKR 136

Query: 64  VPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYGAV 123
           +PCEY N+NL +RVEESS+ P+ LAIK  YQGGQT++VA+DVAQVG+S+WS M R+YGAV
Sbjct: 137 IPCEYKNQNLAIRVEESSHKPYYLAIKLLYQGGQTEIVAIDVAQVGSSNWSFMTRNYGAV 196

Query: 124 WETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCPPWQ 183
           W+   VP GALQ R VVTSGYDGKW+WAK+VLPA+W+ G  YD+GVQI DIA+E C P  
Sbjct: 197 WDASRVPNGALQFRFVVTSGYDGKWVWAKNVLPADWKIGVTYDSGVQITDIAQEGCSP-- 256

Query: 184 CGDAQW 190
           C D  W
Sbjct: 257 CDDGNW 260

[Close]
BLAST of Lsi11G012560 vs. TrEMBL
Match: A0A0D2NI99_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_005G257500 PE=3 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 3.1e-68
Identity = 119/186 (63.98%), Postives = 147/186 (79.03%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYKR 63
           +RCK+ +LC++ GTKV LTD N +N TD VL+ +AF  MA  GKG D+L LG+VDVEYKR
Sbjct: 77  IRCKDSKLCSSKGTKVTLTDLNHNNQTDFVLTSRAFMAMANKGKGQDVLKLGIVDVEYKR 136

Query: 64  VPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYGAV 123
           +PCEY N+NL +RVEESS  P+ LAIK  YQGGQT++VA+DVAQVG+S+W  M R+YGAV
Sbjct: 137 MPCEYKNQNLAIRVEESSQKPYYLAIKLLYQGGQTEIVAIDVAQVGSSNWIFMTRNYGAV 196

Query: 124 WETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCPPWQ 183
           W+T  VP GALQ R VVTSGYDGKW+WAK+VLPA+W+ G +YD+GVQI DIA+E C P  
Sbjct: 197 WDTSRVPNGALQFRFVVTSGYDGKWVWAKNVLPADWKIGVIYDSGVQITDIAQEGCSP-- 256

Query: 184 CGDAQW 190
           C D  W
Sbjct: 257 CDDGNW 260

[Close]
BLAST of Lsi11G012560 vs. TAIR10
Match: AT4G38400.1 (AT4G38400.1 expansin-like A2)

HSP 1 Score: 237.7 bits (605), Expect = 6.1e-63
Identity = 116/188 (61.70%), Postives = 139/188 (73.94%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGAD--LLNLGVVDVEY 63
           VRCKN  LC++ GT V++TD N  N TDLVLS +AF  MA    GAD  LL  G+VD+EY
Sbjct: 79  VRCKNPTLCSSKGTTVIVTDLNKTNQTDLVLSSRAFRAMAKPVVGADRDLLKQGIVDIEY 138

Query: 64  KRVPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYG 123
           +RVPC+Y N+ + VRVEESS NP  LAIK  YQGGQT++VA+ +AQVG+S WS+M RS+G
Sbjct: 139 RRVPCDYGNKKMNVRVEESSKNPNYLAIKLLYQGGQTEVVAIYIAQVGSSHWSYMTRSHG 198

Query: 124 AVWETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCPP 183
           AVW TD VP GALQ R VVT+GYDGK +W++ VLPANW AG  YD GVQI DIA+E C P
Sbjct: 199 AVWVTDKVPNGALQFRFVVTAGYDGKMVWSQRVLPANWEAGKSYDAGVQITDIAQEGCDP 258

Query: 184 WQCGDAQW 190
             C D  W
Sbjct: 259 --CDDHIW 264

[Close]
BLAST of Lsi11G012560 vs. TAIR10
Match: AT3G45970.1 (AT3G45970.1 expansin-like A1)

HSP 1 Score: 232.3 bits (591), Expect = 2.6e-61
Identity = 110/181 (60.77%), Postives = 138/181 (76.24%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMA--LNGKGADLLNLGVVDVEY 63
           VRCKN +LC+T GT V++TD N  N TDLVLS +AF  MA  + G   DLL  G+VD+EY
Sbjct: 78  VRCKNPKLCSTKGTIVMITDLNKSNQTDLVLSSRAFRAMAKPIVGADKDLLKQGIVDIEY 137

Query: 64  KRVPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTS-DWSHMKRSY 123
           +RVPC+Y N+N+ VRVEE+S  P  L IK  YQGGQT++V++D+AQVG+S +W +M RS+
Sbjct: 138 QRVPCDYGNKNMNVRVEEASKKPNYLEIKLLYQGGQTEVVSIDIAQVGSSPNWGYMTRSH 197

Query: 124 GAVWETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCP 182
           GAVW TD VP GA+Q R VVT GYDGK IW++SVLP+NW AG +YD GVQI DIA+E C 
Sbjct: 198 GAVWVTDKVPTGAIQFRFVVTGGYDGKMIWSQSVLPSNWEAGKIYDAGVQITDIAQEGCD 257

[Close]
BLAST of Lsi11G012560 vs. TAIR10
Match: AT3G45960.2 (AT3G45960.2 expansin-like A3)

HSP 1 Score: 230.3 bits (586), Expect = 9.7e-61
Identity = 110/178 (61.80%), Postives = 132/178 (74.16%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGAD--LLNLGVVDVEY 63
           VRCKN +LCN+ GT V++TD N+ N TDLVLS +AF  MA    G D  LL  G+VDVEY
Sbjct: 78  VRCKNPKLCNSKGTIVMVTDLNTSNQTDLVLSSRAFRAMAKPVVGVDKYLLKQGIVDVEY 137

Query: 64  KRVPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYG 123
           +RVPC Y  RNL VRVEE+S  P  LAIK  YQGGQT++V +D+A VG+S WS+M RS+G
Sbjct: 138 QRVPCNYGKRNLNVRVEEASKKPNYLAIKLLYQGGQTEVVGIDIAPVGSSQWSYMSRSHG 197

Query: 124 AVWETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESC 180
           AVW TD VP GALQ +  VT GYDGK +W+K VLPANW +G +YD GVQI DIA+E C
Sbjct: 198 AVWATDKVPTGALQFKFTVTGGYDGKTVWSKRVLPANWNSGRIYDAGVQITDIAQEGC 255

[Close]
BLAST of Lsi11G012560 vs. TAIR10
Match: AT4G17030.1 (AT4G17030.1 expansin-like B1)

HSP 1 Score: 147.9 bits (372), Expect = 6.3e-36
Identity = 72/166 (43.37%), Postives = 97/166 (58.43%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYKR 63
           VRCK    C+  G  VV TD    + TD +LSPKA+  MA  G    L + GVV+VEY+R
Sbjct: 82  VRCKIPPHCSEEGVYVVATDSGEGDGTDFILSPKAYGRMARPGTENQLYSFGVVNVEYQR 141

Query: 64  VPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYGAV 123
           +PC Y   NL+ ++ E SYNP  LAI   Y GG  D++AV+V Q    +W  M+R +GAV
Sbjct: 142 IPCRYAGYNLVYKIHEKSYNPHYLAILVLYVGGVNDILAVEVWQEDCKEWRRMRRVFGAV 201

Query: 124 WETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGV 170
            +  N P G L LR +V       WI + + +PA+W AGA YD+ +
Sbjct: 202 HDLQNPPRGTLTLRFLVYGSAGINWIQSPNAIPADWTAGATYDSNI 247

[Close]
BLAST of Lsi11G012560 vs. TAIR10
Match: AT1G65680.1 (AT1G65680.1 expansin B2)

HSP 1 Score: 98.6 bits (244), Expect = 4.4e-21
Identity = 57/170 (33.53%), Postives = 93/170 (54.71%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLV---LSPKAFFTMALNGKGADLLNLGVVDVE 63
           V+C ++  C+     VV+TD+    V + V   LS  AF  MA++G+ + L N+G + + 
Sbjct: 103 VKCTSKSACSKNPVTVVITDECPGCVKESVHFDLSGTAFGAMAISGQDSQLRNVGELQIL 162

Query: 64  YKRVPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSD-WSHMKRS 123
           YK+V C Y  + +  +V++ S N    A+   Y  G  ++  +++ Q   SD W  M +S
Sbjct: 163 YKKVECNYIGKTVTFQVDKGS-NANSFAVLVAYVNGDGEIGRIELKQALDSDKWLSMSQS 222

Query: 124 YGAVWETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGV 170
           +GAVW+ D        L + VTS   GK + A +V+PANW+ GA+Y + V
Sbjct: 223 WGAVWKLDVSSPLRAPLSLRVTSLESGKTVVASNVIPANWQPGAIYKSNV 271

[Close]
BLAST of Lsi11G012560 vs. NCBI nr
Match: gi|778730065|ref|XP_004144934.2| (PREDICTED: expansin-like A2 [Cucumis sativus])

HSP 1 Score: 375.2 bits (962), Expect = 6.9e-101
Identity = 174/187 (93.05%), Postives = 180/187 (96.26%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYKR 63
           VRCKNRRLCNTVGTKVVLTDQN+DNVTDLVLSPKAFFTMALNGKG+DLLNLGVVDVEYKR
Sbjct: 78  VRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSPKAFFTMALNGKGSDLLNLGVVDVEYKR 137

Query: 64  VPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYGAV 123
           VPCEYPNRNLLVRVEESSYNPFKLAIKY YQGGQT+MVAVD+AQVGTSDWSHMKRSYGAV
Sbjct: 138 VPCEYPNRNLLVRVEESSYNPFKLAIKYLYQGGQTEMVAVDIAQVGTSDWSHMKRSYGAV 197

Query: 124 WETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCPPWQ 183
           WETDNVPEGALQLRMVVTSGYDG  +WAKSVLPA WRAG +YDTGVQINDIAKESCPPWQ
Sbjct: 198 WETDNVPEGALQLRMVVTSGYDGNLVWAKSVLPATWRAGGIYDTGVQINDIAKESCPPWQ 257

Query: 184 CGDAQWK 191
           CGD  WK
Sbjct: 258 CGDNPWK 264

[Close]
BLAST of Lsi11G012560 vs. NCBI nr
Match: gi|659094106|ref|XP_008447887.1| (PREDICTED: expansin-like A2 isoform X2 [Cucumis melo])

HSP 1 Score: 372.5 bits (955), Expect = 4.5e-100
Identity = 174/188 (92.55%), Postives = 182/188 (96.81%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYKR 63
           VRCKNRRLCNTVGTKVVLTDQN+DNVTDLVLS KAFFTMAL+GKG+DLLNLGVVDVEYKR
Sbjct: 76  VRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSQKAFFTMALSGKGSDLLNLGVVDVEYKR 135

Query: 64  VPCEYPN-RNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYGA 123
           VPCEYPN RNLLVRVEESSYNPFKLAIK+ YQGGQT+MVAVD+AQVGTSDWSHMKRSYGA
Sbjct: 136 VPCEYPNYRNLLVRVEESSYNPFKLAIKFLYQGGQTEMVAVDIAQVGTSDWSHMKRSYGA 195

Query: 124 VWETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCPPW 183
           VWETDNVPEGALQLRMVVTSGYDGKW+WAKSVLPANWRAGA+YDTGVQI DIAKESCPPW
Sbjct: 196 VWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWRAGAIYDTGVQIKDIAKESCPPW 255

Query: 184 QCGDAQWK 191
           QCGD  WK
Sbjct: 256 QCGDNPWK 263

[Close]
BLAST of Lsi11G012560 vs. NCBI nr
Match: gi|659094104|ref|XP_008447886.1| (PREDICTED: expansin-like A1 isoform X1 [Cucumis melo])

HSP 1 Score: 372.5 bits (955), Expect = 4.5e-100
Identity = 174/188 (92.55%), Postives = 182/188 (96.81%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYKR 63
           VRCKNRRLCNTVGTKVVLTDQN+DNVTDLVLS KAFFTMAL+GKG+DLLNLGVVDVEYKR
Sbjct: 77  VRCKNRRLCNTVGTKVVLTDQNNDNVTDLVLSQKAFFTMALSGKGSDLLNLGVVDVEYKR 136

Query: 64  VPCEYPN-RNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYGA 123
           VPCEYPN RNLLVRVEESSYNPFKLAIK+ YQGGQT+MVAVD+AQVGTSDWSHMKRSYGA
Sbjct: 137 VPCEYPNYRNLLVRVEESSYNPFKLAIKFLYQGGQTEMVAVDIAQVGTSDWSHMKRSYGA 196

Query: 124 VWETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCPPW 183
           VWETDNVPEGALQLRMVVTSGYDGKW+WAKSVLPANWRAGA+YDTGVQI DIAKESCPPW
Sbjct: 197 VWETDNVPEGALQLRMVVTSGYDGKWVWAKSVLPANWRAGAIYDTGVQIKDIAKESCPPW 256

Query: 184 QCGDAQWK 191
           QCGD  WK
Sbjct: 257 QCGDNPWK 264

[Close]
BLAST of Lsi11G012560 vs. NCBI nr
Match: gi|659094116|ref|XP_008447892.1| (PREDICTED: expansin-like A2 [Cucumis melo])

HSP 1 Score: 354.0 bits (907), Expect = 1.6e-94
Identity = 160/187 (85.56%), Postives = 177/187 (94.65%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYKR 63
           VRCKNRRLCNT+GTKVVLTDQN+DN TDLVLS +AFFTMALNGKGADLLNLGVVDVEYKR
Sbjct: 76  VRCKNRRLCNTIGTKVVLTDQNNDNATDLVLSKRAFFTMALNGKGADLLNLGVVDVEYKR 135

Query: 64  VPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYGAV 123
           V CEY ++NLLV+VEE SYNPF LAIK+ YQGGQTDMVAVD+AQVGTS+WSHMKRSYGAV
Sbjct: 136 VACEYKHKNLLVQVEEFSYNPFYLAIKFLYQGGQTDMVAVDIAQVGTSEWSHMKRSYGAV 195

Query: 124 WETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCPPWQ 183
           WE +N+PEG+LQLRMVVTSGYDGKW+WAKSVLPA+W++GA+YDTGVQINDIAKESCPPWQ
Sbjct: 196 WEINNIPEGSLQLRMVVTSGYDGKWVWAKSVLPADWKSGAIYDTGVQINDIAKESCPPWQ 255

Query: 184 CGDAQWK 191
           CGD  WK
Sbjct: 256 CGDKPWK 262

[Close]
BLAST of Lsi11G012560 vs. NCBI nr
Match: gi|449454267|ref|XP_004144877.1| (PREDICTED: expansin-like A3 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 1.2e-73
Identity = 127/187 (67.91%), Postives = 154/187 (82.35%), Query Frame = 1 

Query: 4   VRCKNRRLCNTVGTKVVLTDQNSDNVTDLVLSPKAFFTMALNGKGADLLNLGVVDVEYKR 63
           VRCK++RLCNT G+KVVLTDQN D+  D VLS KAF  MAL GKG +LLN G+VDVEYKR
Sbjct: 77  VRCKDKRLCNTAGSKVVLTDQNYDSRADFVLSRKAFSAMALKGKGQELLNTGIVDVEYKR 136

Query: 64  VPCEYPNRNLLVRVEESSYNPFKLAIKYFYQGGQTDMVAVDVAQVGTSDWSHMKRSYGAV 123
           +PC Y N+NL VRVEESSYNP  LA+K  YQGGQT++VAV++A+VG+ +W  ++R+YGAV
Sbjct: 137 IPCGYKNKNLAVRVEESSYNPNYLAVKLLYQGGQTEIVAVEIAEVGSYEWVSLRRNYGAV 196

Query: 124 WETDNVPEGALQLRMVVTSGYDGKWIWAKSVLPANWRAGAVYDTGVQINDIAKESCPPWQ 183
           W+T  VP+GALQ+RM  TSGYDGKW+WA+ VLP +W+ GA+YDTGVQI DIAKESCP  Q
Sbjct: 197 WDTSKVPKGALQMRMAFTSGYDGKWVWAEYVLPVDWKVGAIYDTGVQIYDIAKESCPTSQ 256

Query: 184 CGDAQWK 191
           CGD  WK
Sbjct: 257 CGDKPWK 263

The following BLAST results are available for this feature:
BLAST of Lsi11G012560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
EXLA2_ARATH1.1e-6161.70Expansin-like A2 OS=Arabidopsis thaliana GN=EXLA2 PE=2 SV=1[more]
EXLA1_ARATH4.5e-6060.77Expansin-like A1 OS=Arabidopsis thaliana GN=EXLA1 PE=2 SV=1[more]
EXLA3_ARATH1.7e-5961.80Expansin-like A3 OS=Arabidopsis thaliana GN=EXLA3 PE=2 SV=1[more]
EXLA1_ORYSJ1.5e-5858.51Expansin-like A1 OS=Oryza sativa subsp. japonica GN=EXLA1 PE=2 SV=1[more]
EXLA2_ORYSJ8.8e-5657.89Expansin-like A2 OS=Oryza sativa subsp. japonica GN=EXLA2 PE=2 SV=1[more]
BLAST of Lsi11G012560 vs. TrEMBL
Match NameE-valueIdentityDescription
V4SA67_9ROSI1.3e-6965.24Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029088mg PE=3 SV=1[more]
A0A067FLN8_CITSI1.7e-6965.24Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024895mg PE=3 SV=1[more]
A0A067FLH7_CITSI1.7e-6965.24Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g024895mg PE=3 SV=1[more]
A0A0B0P1I4_GOSAR1.4e-6863.98Expansin-like A1 OS=Gossypium arboreum GN=F383_05840 PE=3 SV=1[more]
A0A0D2NI99_GOSRA3.1e-6863.98Uncharacterized protein OS=Gossypium raimondii GN=B456_005G257500 PE=3 SV=1[more]
BLAST of Lsi11G012560 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G38400.16.1e-6361.70 expansin-like A2[more]
AT3G45970.12.6e-6160.77 expansin-like A1[more]
AT3G45960.29.7e-6161.80 expansin-like A3[more]
AT4G17030.16.3e-3643.37 expansin-like B1[more]
AT1G65680.14.4e-2133.53 expansin B2[more]
BLAST of Lsi11G012560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778730065|ref|XP_004144934.2|6.9e-10193.05PREDICTED: expansin-like A2 [Cucumis sativus][more]
gi|659094106|ref|XP_008447887.1|4.5e-10092.55PREDICTED: expansin-like A2 isoform X2 [Cucumis melo][more]
gi|659094104|ref|XP_008447886.1|4.5e-10092.55PREDICTED: expansin-like A1 isoform X1 [Cucumis melo][more]
gi|659094116|ref|XP_008447892.1|1.6e-9485.56PREDICTED: expansin-like A2 [Cucumis melo][more]
gi|449454267|ref|XP_004144877.1|1.2e-7367.91PREDICTED: expansin-like A3 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0005576extracellular region
Vocabulary: INTERPRO
TermDefinition
IPR009009RlpA-like_DPBB
IPR007118Expan_Lol_pI
IPR007117Expansin_CBD
IPR007112Expansin/allergen_DPBB_dom
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0019953 sexual reproduction
cellular_component GO:0005576 extracellular region
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi11G012560.1Lsi11G012560.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR007112Expansin/pollen allergen, DPBB domainPROFILEPS50842EXPANSIN_EG45coord: 1..71
score: 12
IPR007117Expansin, cellulose-binding-like domainGENE3DG3DSA:2.60.40.760coord: 66..171
score: 2.0
IPR007117Expansin, cellulose-binding-like domainPFAMPF01357Pollen_allerg_1coord: 75..156
score: 8.0
IPR007117Expansin, cellulose-binding-like domainPROFILEPS50843EXPANSIN_CBDcoord: 85..167
score: 19
IPR007117Expansin, cellulose-binding-like domainunknownSSF49590PHL pollen allergencoord: 71..166
score: 2.62
IPR007118Expansin/Lol pIPRINTSPR01225EXPANSNFAMLYcoord: 113..127
score: 2.3E-8coord: 54..70
score: 2.3E-8coord: 153..167
score: 2.
IPR009009RlpA-like protein, double-psi beta-barrel domainGENE3DG3DSA:2.40.40.10coord: 4..65
score: 2.3
IPR009009RlpA-like protein, double-psi beta-barrel domainunknownSSF50685Barwin-like endoglucanasescoord: 3..70
score: 1.26
NoneNo IPR availablePANTHERPTHR31692FAMILY NOT NAMEDcoord: 4..173
score: 8.3E
NoneNo IPR availablePANTHERPTHR31692:SF4EXPANSIN-LIKE A1-RELATEDcoord: 4..173
score: 8.3E