Lsi11G015820 (gene) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: five_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.CCAAAATGGAACGACACACTTCTTTGCAGCTCGCCCCCGTCTCCGGTCGGACCAATCTAGATAACACGCACTCTTTAGGGTTTGCTAGTATAGTTTAGTCTAGTCCTGTGCTTCTTTCAAGTTCTCTAGCGTCTGGGATAAAAAAAATGGCTAATCAGCTGCACGGTTACAACTCCGTCTACGGTGCGGCACCTGCCACTGCCACTGCCACTGCCACTGCCGCTCTATCTCTTCCCACCACATACTCGTCTTCCCGTTCCCTCTCCGACATCGTCTCCGGCCGTTATCTCCTGTCAGACTCGCTGTCCTCCGGCCTCTCCATTAAGCACTCTGTAACTGATCGTGGTACCTCCATGTATTCGACCCAGAAAGAAGCCCTTATGTTATCGGCTGCCGATATTGTCCCAAGAACGTCGCATTTGGTCCCTCAATTCTCTTGGCCGAGTTCTGATGTTGCTGCTGCGCTTGACTCTGTTGTTTCTGGCATCAAACGTTCTTCTGATGGTAAGTTTTATTCTTTGTTTATTCAAATCTCTTGGAAAATCACTTGCAAAATAATTACTTGAGTACATGGAGATTAGCTTTAAGCTTCACGAAAACGAGGCAGGATGAATATGTTCACTTTTGGTTTCCGAAAACATCACCGATGGGATACTTATAAGTTTTTATTCTTTTTACTGCTTTCATCTGACCACCAAATGGCATTCGAGATCATGGGGCTTTGGTTTGGCTTCAGTGCTTCGATTCGTGCTGTTCACTGTCTTTTTCGCTATTATATATATATATATATATATATCTTTGGCATATTGGACGAACACCAACCCAAACAATAGTTCAATACAGGTAGGAAAAGATAATAGTCCTCATTCTTTTACGTTCTCACTGTTATGGACAGTGGGAGTTCCATATTGTTTTCGACTTTTCGTACCAAAGTATTTTATACATAAGCCATCTTTCTTCTCTGGAGGCTGTAACTAGGATATTATAAATCTCTTGTGATTCATGCACGCCCACTATGTCATATACATAATTTTATGTATGGGGTTGACGTAATGGTTCGTTTTCATCCTGCTGCCTCTAAGTTGCACCACAACACTATGAAGCAGTCTTAAATTGATATGATTTTTTTGCTATTTTTATATTTAATTCAAGTGCAAAGGGCCTAAATTCTATAAAACTTCATCCAGACTGTTTATTTATATGATATATATTTTGAAAATGTTATATTTTACATAATCTACTATATTTAATTTCTAAATCTGTACAGCCGAAAGAGTAGTTGTAAAAATACTTATATGGTAACGTACATGTTTGTCTTTCTTGTACATATTTGTCTACTATGTACAATAGTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGCAAAGTGAAGCCTGGTATACTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCCTGTATATCCGCAGAGGCCTGGGGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTGACTGTTTTCTGCTATCTTTTATACCTATAA CCAAAATGGAACGACACACTTCTTTGCAGCTCGCCCCCGTCTCCGGTCGGACCAATCTAGATAACACGCACTCTTTAGGGTTTGCTAGTATAGTTTAGTCTAGTCCTGTGCTTCTTTCAAGTTCTCTAGCGTCTGGGATAAAAAAAATGGCTAATCAGCTGCACGGTTACAACTCCGTCTACGGTGCGGCACCTGCCACTGCCACTGCCACTGCCACTGCCGCTCTATCTCTTCCCACCACATACTCGTCTTCCCGTTCCCTCTCCGACATCGTCTCCGGCCGTTATCTCCTGTCAGACTCGCTGTCCTCCGGCCTCTCCATTAAGCACTCTGTAACTGATCGTGGTACCTCCATGTATTCGACCCAGAAAGAAGCCCTTATGTTATCGGCTGCCGATATTGTCCCAAGAACGTCGCATTTGGTCCCTCAATTCTCTTGGCCGAGTTCTGATGTTGCTGCTGCGCTTGACTCTGTTGTTTCTGGCATCAAACGTTCTTCTGATGTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGCAAAGTGAAGCCTGGTATACTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCCTGTATATCCGCAGAGGCCTGGGGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTGACTGTTTTCTGCTATCTTTTATACCTATAA ATGGCTAATCAGCTGCACGGTTACAACTCCGTCTACGGTGCGGCACCTGCCACTGCCACTGCCACTGCCACTGCCGCTCTATCTCTTCCCACCACATACTCGTCTTCCCGTTCCCTCTCCGACATCGTCTCCGGCCGTTATCTCCTGTCAGACTCGCTGTCCTCCGGCCTCTCCATTAAGCACTCTGTAACTGATCGTGGTACCTCCATGTATTCGACCCAGAAAGAAGCCCTTATGTTATCGGCTGCCGATATTGTCCCAAGAACGTCGCATTTGGTCCCTCAATTCTCTTGGCCGAGTTCTGATGTTGCTGCTGCGCTTGACTCTGTTGTTTCTGGCATCAAACGTTCTTCTGATGTGCTCTACGATCAGACTGTTTTGGGTTCCTATAACACTTTGGGGCAAAGTGAAGCCTGGTATACTTCAAATTCTTTAGCCAAGCGTCCTAGATTTGAAAGTACAAGCAATTTGCCTGTATATCCGCAGAGGCCTGGGGAGAAGGACTGTGCCCACTATATGCTCACAAGAACCTGTAAATTTGGAGATAGCTGCAAGTTTGACCATCCTATTTGGGTTCCTGAAGGTGGAATCCCAGATTGGAAAGAGGTGACTGTTTTCTGCTATCTTTTATACCTATAA MANQLHGYNSVYGAAPATATATATAALSLPTTYSSSRSLSDIVSGRYLLSDSLSSGLSIKHSVTDRGTSMYSTQKEALMLSAADIVPRTSHLVPQFSWPSSDVAAALDSVVSGIKRSSDVLYDQTVLGSYNTLGQSEAWYTSNSLAKRPRFESTSNLPVYPQRPGEKDCAHYMLTRTCKFGDSCKFDHPIWVPEGGIPDWKEVTVFCYLLYL
BLAST of Lsi11G015820 vs. Swiss-Prot
Match: C3H37_ARATH (Zinc finger CCCH domain-containing protein 37 OS=Arabidopsis thaliana GN=HUA1 PE=1 SV=1) HSP 1 Score: 166.0 bits (419), Expect = 4.4e-40 Identity = 70/115 (60.87%), Postives = 91/115 (79.13%), Query Frame = 1
BLAST of Lsi11G015820 vs. Swiss-Prot
Match: C3H8_ORYSJ (Zinc finger CCCH domain-containing protein 8 OS=Oryza sativa subsp. japonica GN=Os01g0616400 PE=2 SV=2) HSP 1 Score: 149.4 bits (376), Expect = 4.3e-35 Identity = 67/102 (65.69%), Postives = 83/102 (81.37%), Query Frame = 1
BLAST of Lsi11G015820 vs. Swiss-Prot
Match: C3H43_ARATH (Zinc finger CCCH domain-containing protein 43 OS=Arabidopsis thaliana GN=At3g48440 PE=2 SV=1) HSP 1 Score: 56.6 bits (135), Expect = 3.8e-07 Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1
BLAST of Lsi11G015820 vs. Swiss-Prot
Match: C3H34_ARATH (Zinc finger CCCH domain-containing protein 34 OS=Arabidopsis thaliana GN=At3g06410 PE=2 SV=2) HSP 1 Score: 54.3 bits (129), Expect = 1.9e-06 Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 1
BLAST of Lsi11G015820 vs. Swiss-Prot
Match: C3H67_ARATH (Zinc finger CCCH domain-containing protein 67 OS=Arabidopsis thaliana GN=At5g63260 PE=2 SV=2) HSP 1 Score: 53.5 bits (127), Expect = 3.2e-06 Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1
BLAST of Lsi11G015820 vs. TrEMBL
Match: A0A0A0K469_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G252650 PE=4 SV=1) HSP 1 Score: 366.7 bits (940), Expect = 1.9e-98 Identity = 185/203 (91.13%), Postives = 189/203 (93.10%), Query Frame = 1
BLAST of Lsi11G015820 vs. TrEMBL
Match: D7T0Z4_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_19s0085g01180 PE=4 SV=1) HSP 1 Score: 221.1 bits (562), Expect = 1.3e-54 Identity = 123/212 (58.02%), Postives = 153/212 (72.17%), Query Frame = 1
BLAST of Lsi11G015820 vs. TrEMBL
Match: A0A067KR25_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06908 PE=4 SV=1) HSP 1 Score: 195.3 bits (495), Expect = 7.6e-47 Identity = 91/139 (65.47%), Postives = 109/139 (78.42%), Query Frame = 1
BLAST of Lsi11G015820 vs. TrEMBL
Match: B9HYE1_POPTR (Enhancer of AG-4 1 family protein OS=Populus trichocarpa GN=POPTR_0010s18390g PE=4 SV=1) HSP 1 Score: 193.7 bits (491), Expect = 2.2e-46 Identity = 113/213 (53.05%), Postives = 140/213 (65.73%), Query Frame = 1
BLAST of Lsi11G015820 vs. TrEMBL
Match: B9HI13_POPTR (Enhancer of AG-4 1 family protein OS=Populus trichocarpa GN=POPTR_0008s07980g PE=4 SV=1) HSP 1 Score: 192.6 bits (488), Expect = 4.9e-46 Identity = 109/212 (51.42%), Postives = 144/212 (67.92%), Query Frame = 1
BLAST of Lsi11G015820 vs. TAIR10
Match: AT3G12680.1 (AT3G12680.1 floral homeotic protein (HUA1)) HSP 1 Score: 166.0 bits (419), Expect = 2.5e-41 Identity = 70/115 (60.87%), Postives = 91/115 (79.13%), Query Frame = 1
BLAST of Lsi11G015820 vs. TAIR10
Match: AT3G48440.1 (AT3G48440.1 Zinc finger C-x8-C-x5-C-x3-H type family protein) HSP 1 Score: 56.6 bits (135), Expect = 2.1e-08 Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1
BLAST of Lsi11G015820 vs. TAIR10
Match: AT3G06410.1 (AT3G06410.1 Zinc finger C-x8-C-x5-C-x3-H type family protein) HSP 1 Score: 54.3 bits (129), Expect = 1.1e-07 Identity = 20/39 (51.28%), Postives = 29/39 (74.36%), Query Frame = 1
BLAST of Lsi11G015820 vs. TAIR10
Match: AT5G63260.2 (AT5G63260.2 Zinc finger C-x8-C-x5-C-x3-H type family protein) HSP 1 Score: 53.5 bits (127), Expect = 1.8e-07 Identity = 19/32 (59.38%), Postives = 25/32 (78.12%), Query Frame = 1
BLAST of Lsi11G015820 vs. TAIR10
Match: AT3G02830.1 (AT3G02830.1 zinc finger protein 1) HSP 1 Score: 53.1 bits (126), Expect = 2.4e-07 Identity = 18/38 (47.37%), Postives = 27/38 (71.05%), Query Frame = 1
BLAST of Lsi11G015820 vs. NCBI nr
Match: gi|449461124|ref|XP_004148293.1| (PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1 [Cucumis sativus]) HSP 1 Score: 366.7 bits (940), Expect = 2.7e-98 Identity = 185/203 (91.13%), Postives = 189/203 (93.10%), Query Frame = 1
BLAST of Lsi11G015820 vs. NCBI nr
Match: gi|700189075|gb|KGN44308.1| (hypothetical protein Csa_7G252650 [Cucumis sativus]) HSP 1 Score: 366.7 bits (940), Expect = 2.7e-98 Identity = 185/203 (91.13%), Postives = 189/203 (93.10%), Query Frame = 1
BLAST of Lsi11G015820 vs. NCBI nr
Match: gi|659092451|ref|XP_008447068.1| (PREDICTED: zinc finger CCCH domain-containing protein 37 [Cucumis melo]) HSP 1 Score: 359.4 bits (921), Expect = 4.4e-96 Identity = 184/203 (90.64%), Postives = 189/203 (93.10%), Query Frame = 1
BLAST of Lsi11G015820 vs. NCBI nr
Match: gi|720015520|ref|XP_010260864.1| (PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1 [Nelumbo nucifera]) HSP 1 Score: 230.7 bits (587), Expect = 2.3e-57 Identity = 124/226 (54.87%), Postives = 149/226 (65.93%), Query Frame = 1
BLAST of Lsi11G015820 vs. NCBI nr
Match: gi|225462348|ref|XP_002269152.1| (PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X2 [Vitis vinifera]) HSP 1 Score: 221.1 bits (562), Expect = 1.9e-54 Identity = 123/212 (58.02%), Postives = 153/212 (72.17%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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