Lsi08G015630.1 (mRNA) Bottle gourd (USVL1VR-Ls)
The following sequences are available for this feature:
Legend: CDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.ATGCACGTGACTGGAGTCCATCAAGTTCTTCTGATCATTAATTTTCTTTTCCTTTTTGTTAAAAAGAAATCTCTCACCTTTTTACAGACTACTGAGGTTGATTTGTTTGCTTCGCAACCTGCTTCAGTTTCTGCAACGGTTGACTTTTTTGCCTCTCCTGAGCCAGTTGTACAAACAGAAACCAACTTTGCTGGTGCAGCAAGAGACAGTAAAGCTTCACAACCTGCTTCAGTTTCTACAACAATCGACTTTTTTGCCTCTCCTGAGCCAGTTGTGCAAACAGAAACTAACTTTGTGAATGCAGCAAGCGACATTAAAGCTTCGCAACCTACTTCAGTTTCTGCACCAGTTGACTTATTTGCCTCTCCTGAGCCAGTTGTACAAACGGAAACCAACTTTGCTAGCGCAGCAAGAGACAGTAAAGCTGTGGATCCATTTGCTGCTCTTCCACTTAACTCTTTTGATGGATCAGATCTTCTCGGTGCACCGTCTTTGCATTCCGAACCAGTGTTGTCAGAACCTTCCCAGAATCCTGTTGGTGGCCCATCTAATAATTTAGATGGAAAATCTATCAACAGTTCAGCAGCTCCAGCCAAGAAGAATACTTTCCAGGTCAAATCTGGGATTTGGGCGGATTCACTTAGTCGAGGGTTGATTGATCTTAATATATCTGCTCGTAAGTCTATCTTAACTGTTACAATCTTTTTTACTGACCTTTTTTATCATTCCCATCTTTTCTCCTCTCTCCTTGAACTAATTGAGACATTTCGTAGACAATATTCCGGAATAGAATGTACCATCTTCAGAATTTTATGTTTATTTTCTTCTAAGTTGGGATCTGGAATAGAAGTGTGCTCATTGGATGGGGCTGAATTAACCTATTATGTTGGGGTAAAAGCAAAGTTAAATTATGAGTTAGTCCTTGTCAAATAAGTTCTTGTACTTTAAAAGGTTCCTAACAAGTGTCTGAACTTTCAAGTTTGTGTCTAATAGGCCCCCTAGACTCTAAAATGTGTGCCAATAAGTCCTTCAACTTTGATTACGTGTCAATGAGTCTCCAACTTTCGTTTTTGTGCCCTATAGGTCCTTGACCTATTCGAATACTTTTCAAAATTCACGAACCTATTTGATCTGTTAATTTTAAAACATGTTGAAAATGTTAGGTATCTCTTAAACACAAAATTGAAAGTTCGGGGATCTATTTGACATTTTTAAAGTGTATGAACCTATTAATCATTACACTCACATGAGAAACTATTACACTCTCTTCATCACTTCGTTAACTCACATGAGAAATTGTTCAGATCTTTTGTTAGTTCTCTTGGTGTATTGTCTTGGCTCCCCCAAGGCACTTTTGGGTTGTTTTAATATAGCTCCCTTAATACAAAAGTTGCTTGCTTGCATTGCAGCCAAGAAGGTTTCCCTGGTAGATGTCGGTGTCGTGGGCGGACTGAGCGATTTATCGGACGAGAGGGAGAAAGGACCAGCACCTATTTATCACATGGGACAAGCAATGGGTGCAGGATCTGGTCTTGGTAGGACAGGATCGCAGACGATTGGAGACGATTTCTTTTCACAACTTTCTGGTCAACAATACCAATTTGGTGGTTTCCAGAAGTAAATTTGTTCTTTCACCCCTGCCTCTATTCTTCCTGTTAATCTGCAAAGAGTGTGTGGGAAAACCTCGAGCCTTTTGGTGTGAATGGCTTTTGCATATACGCCACATATTATTGATTCGAGGAAATGCCTTGAATAATATAAAATGGTTGCTGCGTTTCTTGTGGTTCTATATCTTACTGAGTTGCGATGAATGAAAGAATGATGCTTCTTTTTATTAAACATGTTGCAAAAGTAATACTGGAGCAACTTAACTTTATAAAAATGGAAAGAAAGTGATCACAATACCCTGTCTATAAATTATTCTGATGTTATAAAGGGTTTAAATATATGTAGTTGTGACCTTTGAATGTCTAATTACATGTTCATTAGAATTGAACTATGTACGTTTCTGTTCAAGAGTCAATTAGTTTTTTCTGAATGGGTCCAAATATATATCGTTTTATTGTTGTCT ATGCACGTGACTGGAGTCCATCAAGTTCTTCTGATCATTAATTTTCTTTTCCTTTTTGTTAAAAAGAAATCTCTCACCTTTTTACAGACTACTGAGGTTGATTTGTTTGCTTCGCAACCTGCTTCAGTTTCTGCAACGGTTGACTTTTTTGCCTCTCCTGAGCCAGTTGTACAAACAGAAACCAACTTTGCTGGTGCAGCAAGAGACAGTAAAGCTTCACAACCTGCTTCAGTTTCTACAACAATCGACTTTTTTGCCTCTCCTGAGCCAGTTGTGCAAACAGAAACTAACTTTGTGAATGCAGCAAGCGACATTAAAGCTTCGCAACCTACTTCAGTTTCTGCACCAGTTGACTTATTTGCCTCTCCTGAGCCAGTTGTACAAACGGAAACCAACTTTGCTAGCGCAGCAAGAGACAGTAAAGCTGTGGATCCATTTGCTGCTCTTCCACTTAACTCTTTTGATGGATCAGATCTTCTCGGTGCACCGTCTTTGCATTCCGAACCAGTGTTGTCAGAACCTTCCCAGAATCCTGTTGGTGGCCCATCTAATAATTTAGATGGAAAATCTATCAACAGTTCAGCAGCTCCAGCCAAGAAGAATACTTTCCAGGTCAAATCTGGGATTTGGGCGGATTCACTTAGTCGAGGGTTGATTGATCTTAATATATCTGCTCCCAAGAAGGTTTCCCTGGTAGATGTCGGTGTCGTGGGCGGACTGAGCGATTTATCGGACGAGAGGGAGAAAGGACCAGCACCTATTTATCACATGGGACAAGCAATGGGTGCAGGATCTGGTCTTGGTAGGACAGGATCGCAGACGATTGGAGACGATTTCTTTTCACAACTTTCTGGTCAACAATACCAATTTGGTGGTTTCCAGAAGTAAATTTGTTCTTTCACCCCTGCCTCTATTCTTCCTGTTAATCTGCAAAGAGTGTGTGGGAAAACCTCGAGCCTTTTGGTGTGAATGGCTTTTGCATATACGCCACATATTATTGATTCGAGGAAATGCCTTGAATAATATAAAATGGTTGCTGCGTTTCTTGTGGTTCTATATCTTACTGAGTTGCGATGAATGAAAGAATGATGCTTCTTTTTATTAAACATGTTGCAAAAGTAATACTGGAGCAACTTAACTTTATAAAAATGGAAAGAAAGTGATCACAATACCCTGTCTATAAATTATTCTGATGTTATAAAGGGTTTAAATATATGTAGTTGTGACCTTTGAATGTCTAATTACATGTTCATTAGAATTGAACTATGTACGTTTCTGTTCAAGAGTCAATTAGTTTTTTCTGAATGGGTCCAAATATATATCGTTTTATTGTTGTCT ATGCACGTGACTGGAGTCCATCAAGTTCTTCTGATCATTAATTTTCTTTTCCTTTTTGTTAAAAAGAAATCTCTCACCTTTTTACAGACTACTGAGGTTGATTTGTTTGCTTCGCAACCTGCTTCAGTTTCTGCAACGGTTGACTTTTTTGCCTCTCCTGAGCCAGTTGTACAAACAGAAACCAACTTTGCTGGTGCAGCAAGAGACAGTAAAGCTTCACAACCTGCTTCAGTTTCTACAACAATCGACTTTTTTGCCTCTCCTGAGCCAGTTGTGCAAACAGAAACTAACTTTGTGAATGCAGCAAGCGACATTAAAGCTTCGCAACCTACTTCAGTTTCTGCACCAGTTGACTTATTTGCCTCTCCTGAGCCAGTTGTACAAACGGAAACCAACTTTGCTAGCGCAGCAAGAGACAGTAAAGCTGTGGATCCATTTGCTGCTCTTCCACTTAACTCTTTTGATGGATCAGATCTTCTCGGTGCACCGTCTTTGCATTCCGAACCAGTGTTGTCAGAACCTTCCCAGAATCCTGTTGGTGGCCCATCTAATAATTTAGATGGAAAATCTATCAACAGTTCAGCAGCTCCAGCCAAGAAGAATACTTTCCAGGTCAAATCTGGGATTTGGGCGGATTCACTTAGTCGAGGGTTGATTGATCTTAATATATCTGCTCCCAAGAAGGTTTCCCTGGTAGATGTCGGTGTCGTGGGCGGACTGAGCGATTTATCGGACGAGAGGGAGAAAGGACCAGCACCTATTTATCACATGGGACAAGCAATGGGTGCAGGATCTGGTCTTGGTAGGACAGGATCGCAGACGATTGGAGACGATTTCTTTTCACAACTTTCTGGTCAACAATACCAATTTGGTGGTTTCCAGAAGTAA MHVTGVHQVLLIINFLFLFVKKKSLTFLQTTEVDLFASQPASVSATVDFFASPEPVVQTETNFAGAARDSKASQPASVSTTIDFFASPEPVVQTETNFVNAASDIKASQPTSVSAPVDLFASPEPVVQTETNFASAARDSKAVDPFAALPLNSFDGSDLLGAPSLHSEPVLSEPSQNPVGGPSNNLDGKSINSSAAPAKKNTFQVKSGIWADSLSRGLIDLNISAPKKVSLVDVGVVGGLSDLSDEREKGPAPIYHMGQAMGAGSGLGRTGSQTIGDDFFSQLSGQQYQFGGFQK
BLAST of Lsi08G015630.1 vs. Swiss-Prot
Match: EPN1_ARATH (Clathrin interactor EPSIN 1 OS=Arabidopsis thaliana GN=EPSIN1 PE=1 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 8.4e-37 Identity = 111/257 (43.19%), Postives = 143/257 (55.64%), Query Frame = 1
BLAST of Lsi08G015630.1 vs. Swiss-Prot
Match: EPN3_ARATH (Clathrin interactor EPSIN 3 OS=Arabidopsis thaliana GN=EPSIN3 PE=2 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.8e-08 Identity = 56/186 (30.11%), Postives = 81/186 (43.55%), Query Frame = 1
BLAST of Lsi08G015630.1 vs. Swiss-Prot
Match: EPN2_ARATH (Clathrin interactor EPSIN 2 OS=Arabidopsis thaliana GN=EPSIN2 PE=1 SV=1) HSP 1 Score: 60.8 bits (146), Expect = 2.8e-08 Identity = 42/131 (32.06%), Postives = 66/131 (50.38%), Query Frame = 1
BLAST of Lsi08G015630.1 vs. TrEMBL
Match: A0A0A0LKH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G352400 PE=4 SV=1) HSP 1 Score: 467.6 bits (1202), Expect = 1.1e-128 Identity = 245/276 (88.77%), Postives = 261/276 (94.57%), Query Frame = 1
BLAST of Lsi08G015630.1 vs. TrEMBL
Match: W9RS28_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019545 PE=4 SV=1) HSP 1 Score: 226.9 bits (577), Expect = 3.3e-56 Identity = 150/280 (53.57%), Postives = 177/280 (63.21%), Query Frame = 1
BLAST of Lsi08G015630.1 vs. TrEMBL
Match: A0A0D2UGC2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G047500 PE=4 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 3.1e-54 Identity = 143/286 (50.00%), Postives = 178/286 (62.24%), Query Frame = 1
BLAST of Lsi08G015630.1 vs. TrEMBL
Match: A0A0D2TJL0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G047500 PE=4 SV=1) HSP 1 Score: 220.3 bits (560), Expect = 3.1e-54 Identity = 143/286 (50.00%), Postives = 178/286 (62.24%), Query Frame = 1
BLAST of Lsi08G015630.1 vs. TrEMBL
Match: A0A0D2TDP0_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G047500 PE=4 SV=1) HSP 1 Score: 217.2 bits (552), Expect = 2.6e-53 Identity = 144/287 (50.17%), Postives = 178/287 (62.02%), Query Frame = 1
BLAST of Lsi08G015630.1 vs. TAIR10
Match: AT5G11710.1 (AT5G11710.1 ENTH/VHS family protein) HSP 1 Score: 155.6 bits (392), Expect = 4.7e-38 Identity = 111/257 (43.19%), Postives = 143/257 (55.64%), Query Frame = 1
BLAST of Lsi08G015630.1 vs. TAIR10
Match: AT3G59290.1 (AT3G59290.1 ENTH/VHS family protein) HSP 1 Score: 60.8 bits (146), Expect = 1.6e-09 Identity = 56/186 (30.11%), Postives = 81/186 (43.55%), Query Frame = 1
BLAST of Lsi08G015630.1 vs. TAIR10
Match: AT2G43160.3 (AT2G43160.3 ENTH/VHS family protein) HSP 1 Score: 60.8 bits (146), Expect = 1.6e-09 Identity = 42/131 (32.06%), Postives = 66/131 (50.38%), Query Frame = 1
BLAST of Lsi08G015630.1 vs. NCBI nr
Match: gi|449450326|ref|XP_004142914.1| (PREDICTED: clathrin interactor EPSIN 1 [Cucumis sativus]) HSP 1 Score: 467.6 bits (1202), Expect = 1.6e-128 Identity = 245/276 (88.77%), Postives = 261/276 (94.57%), Query Frame = 1
BLAST of Lsi08G015630.1 vs. NCBI nr
Match: gi|659087529|ref|XP_008444502.1| (PREDICTED: clathrin interactor EPSIN 1 isoform X1 [Cucumis melo]) HSP 1 Score: 458.0 bits (1177), Expect = 1.3e-125 Identity = 244/276 (88.41%), Postives = 258/276 (93.48%), Query Frame = 1
BLAST of Lsi08G015630.1 vs. NCBI nr
Match: gi|659087531|ref|XP_008444503.1| (PREDICTED: clathrin interactor EPSIN 1 isoform X2 [Cucumis melo]) HSP 1 Score: 458.0 bits (1177), Expect = 1.3e-125 Identity = 244/276 (88.41%), Postives = 258/276 (93.48%), Query Frame = 1
BLAST of Lsi08G015630.1 vs. NCBI nr
Match: gi|703101130|ref|XP_010097106.1| (hypothetical protein L484_019545 [Morus notabilis]) HSP 1 Score: 226.9 bits (577), Expect = 4.7e-56 Identity = 150/280 (53.57%), Postives = 177/280 (63.21%), Query Frame = 1
BLAST of Lsi08G015630.1 vs. NCBI nr
Match: gi|823225087|ref|XP_012445334.1| (PREDICTED: clathrin interactor EPSIN 1-like [Gossypium raimondii]) HSP 1 Score: 220.3 bits (560), Expect = 4.4e-54 Identity = 143/286 (50.00%), Postives = 178/286 (62.24%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
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