Lsi08G015840.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G015840.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	LOB domain protein 22
Location	chr08 : 23868870 .. 23870061 (-)
Sequence length	1080

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATATTCGCGGAGATTGCAGCGGAACCGCCACCGCCGAGGAAAGCGGAGTCAAGGATAACACGACTCAGGCGGCTTGTGCTGCCTGCAAATTTCAGAGAAGAAAATGCTCTGCCGATTGTCCTTTGGCTCCGTATTTTCCTGCAAATCGTCTTCAAGATTTTCAAAACGTCCGCAAATTGTTCGGCGTAAAGAACGTCCTCAAAACCCTAGCCGATTTGGAGCCTGACAAGAGATTTAAAGCGGTCGAGTGTATGATTTTCGAAGCCAATTGTCGCGCCAGTGATCTCGCCGGTGGTTGTTACAAAATCATTGCTAAATTGCAGAGTGAAATTACACTTCTCGAGACACAGCATCGTCTTGTCCTCCGTCAGCTCCGACTTTGCCGACAGACAACGGCGGCGGCGATTTCGCAACGCGGTGCGATTCGTTCGGAATTTGATTTTGATTGTAAGCCAGGACTTACTGCTCTTTTGCTTGATTGCGATTATTCTGAAGATTGGATAAGAAAAGAATACTGCAATTTCAATATGATGGAGAATGAAGTTTCTTTTCCCAAAGCCCTAACCCATTAGGGCATTCTTAGTTTTTAGATTCAGATTTAGATTATAATTTTCCTTTTTTTTTTTTTTTTTTTTTTTTTNCGCCACCGCCGAGGAAAGCGGAGTCAAGGATAACACGACTCAGGCGGCTTGTGCTGCCTGCAAATTTCAGAGAAGAAAATGCTCTGCCGATTGTCCTTTGGCTCCGTATTTTCCTGCAAATCGTCTTCAAGATTTTCAAAACGTCCGCAAATTGTTCGGCGTAAAGAACGTCCTCAAAACCCTAGCCGATTTGGAGCCTGACAAGAGATTTAAAGCGGTCGAGTGTATGATTTTCGAAGCCAATTGTCGCGCCAGTGATCTCGCCGGTGGTTGTTACAAAATCATTGCTAAATTGCAGAGTGAAATTACACTTCTCGAGACACAGCATCGTCTTGTCCTCCGTCAGCTCCGACTTTGCCGACAGACAACGGCGGCGGCGATTTCGCAACGCGGTGCGATTCGTTCGGAATTTGATTTTGATTGTAAGCCAGGACTTACTGCTCTTTTGCTTGATTGCGATTATTCTGAAGATTGGATAAGAAAAGAATACTGCAATTTCAATATGATGGAGAATGAAGTTTCTTTTCCCAAAGCCCTAACCCATTAG

mRNA sequence

ATGAATATTCGCGGAGATTGCAGCGGAACCGCCACCGCCGAGGAAAGCGGAGTCAAGGATAACACGACTCAGGCGGCTTGTGCTGCCTGCAAATTTCAGAGAAGAAAATGCTCTGCCGATTGTCCTTTGGCTCCGTATTTTCCTGCAAATCGTCTTCAAGATTTTCAAAACGTCCGCAAATTGTTCGGCGTAAAGAACGTCCTCAAAACCCTAGCCGATTTGGAGCCTGACAAGAGATTTAAAGCGGTCGAGTGTATGATTTTCGAAGCCAATTGTCGCGCCAGTGATCTCGCCGGTGGTTGTTACAAAATCATTGCTAAATTGCAGAGTGAAATTACACTTCTCGAGACACAGCATCGTCTTGTCCTCCGTCAGCTCCGACTTTGCCGACAGACAACGGCGGCGGCGATTTCGCAACGCGGTGCGATTCGTTCGGAATTTGATTTTGATTGTAAGCCAGGACTTACTGCTCTTTTGCTTGATTGCGATTATTCTGAAGATTGGATAAGAAAAGAATACTGCAATTTCAATATGATGGAGAATGAAGAAAGCGGAGTCAAGGATAACACGACTCAGGCGGCTTGTGCTGCCTGCAAATTTCAGAGAAGAAAATGCTCTGCCGATTGTCCTTTGGCTCCGTATTTTCCTGCAAATCGTCTTCAAGATTTTCAAAACGTCCGCAAATTGTTCGGCGTAAAGAACGTCCTCAAAACCCTAGCCGATTTGGAGCCTGACAAGAGATTTAAAGCGGTCGAGTGTATGATTTTCGAAGCCAATTGTCGCGCCAGTGATCTCGCCGGTGGTTGTTACAAAATCATTGCTAAATTGCAGAGTGAAATTACACTTCTCGAGACACAGCATCGTCTTGTCCTCCGTCAGCTCCGACTTTGCCGACAGACAACGGCGGCGGCGATTTCGCAACGCGGTGCGATTCGTTCGGAATTTGATTTTGATTGTAAGCCAGGACTTACTGCTCTTTTGCTTGATTGCGATTATTCTGAAGATTGGATAAGAAAAGAATACTGCAATTTCAATATGATGGAGAATGAAGTTTCTTTTCCCAAAGCCCTAACCCATTAG

Coding sequence (CDS)

ATGAATATTCGCGGAGATTGCAGCGGAACCGCCACCGCCGAGGAAAGCGGAGTCAAGGATAACACGACTCAGGCGGCTTGTGCTGCCTGCAAATTTCAGAGAAGAAAATGCTCTGCCGATTGTCCTTTGGCTCCGTATTTTCCTGCAAATCGTCTTCAAGATTTTCAAAACGTCCGCAAATTGTTCGGCGTAAAGAACGTCCTCAAAACCCTAGCCGATTTGGAGCCTGACAAGAGATTTAAAGCGGTCGAGTGTATGATTTTCGAAGCCAATTGTCGCGCCAGTGATCTCGCCGGTGGTTGTTACAAAATCATTGCTAAATTGCAGAGTGAAATTACACTTCTCGAGACACAGCATCGTCTTGTCCTCCGTCAGCTCCGACTTTGCCGACAGACAACGGCGGCGGCGATTTCGCAACGCGGTGCGATTCGTTCGGAATTTGATTTTGATTGTAAGCCAGGACTTACTGCTCTTTTGCTTGATTGCGATTATTCTGAAGATTGGATAAGAAAAGAATACTGCAATTTCAATATGATGGAGAATGAAGAAAGCGGAGTCAAGGATAACACGACTCAGGCGGCTTGTGCTGCCTGCAAATTTCAGAGAAGAAAATGCTCTGCCGATTGTCCTTTGGCTCCGTATTTTCCTGCAAATCGTCTTCAAGATTTTCAAAACGTCCGCAAATTGTTCGGCGTAAAGAACGTCCTCAAAACCCTAGCCGATTTGGAGCCTGACAAGAGATTTAAAGCGGTCGAGTGTATGATTTTCGAAGCCAATTGTCGCGCCAGTGATCTCGCCGGTGGTTGTTACAAAATCATTGCTAAATTGCAGAGTGAAATTACACTTCTCGAGACACAGCATCGTCTTGTCCTCCGTCAGCTCCGACTTTGCCGACAGACAACGGCGGCGGCGATTTCGCAACGCGGTGCGATTCGTTCGGAATTTGATTTTGATTGTAAGCCAGGACTTACTGCTCTTTTGCTTGATTGCGATTATTCTGAAGATTGGATAAGAAAAGAATACTGCAATTTCAATATGATGGAGAATGAAGTTTCTTTTCCCAAAGCCCTAACCCATTAG

Protein sequence

MNIRGDCSGTATAEESGVKDNTTQAACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLEPDKRFKAVECMIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVLRQLRLCRQTTAAAISQRGAIRSEFDFDCKPGLTALLLDCDYSEDWIRKEYCNFNMMENEESGVKDNTTQAACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLEPDKRFKAVECMIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVLRQLRLCRQTTAAAISQRGAIRSEFDFDCKPGLTALLLDCDYSEDWIRKEYCNFNMMENEVSFPKALTH

Homology

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BLAST of Lsi08G015840.1 vs. Swiss-Prot
Match: LBD22_ARATH (LOB domain-containing protein 22 OS=Arabidopsis thaliana GN=LBD22 PE=2 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 2.9e-23
Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = 1


Query: 184 SGVKDNTTQAACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLE 243
           S   +N+T  ACAACK+QRRKC+ DC LAPYFP +R + F N  KLFGV N+ K +  L 
Sbjct: 26  SSSNNNSTNQACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLT 85

Query: 244 PDKRFKAVECMIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVLRQLRLCR 299
           P ++  A+  ++F+++ RA+D   GCY II KLQ +I     +  +VL+QL + R
Sbjct: 86  PPEKDAAMHTIMFQSDARANDPVDGCYGIIKKLQYQIEYTRNELEIVLQQLAMFR 140

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BLAST of Lsi08G015840.1 vs. Swiss-Prot
Match: LBD27_ARATH (LOB domain-containing protein 27 OS=Arabidopsis thaliana GN=LBD27 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 3.3e-19
Identity = 48/108 (44.44%), Postives = 72/108 (66.67%), Query Frame = 1


Query: 191 TQAACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLEPDKRFKA 250
           T  ACAACK+QRR+C+ADCPLAPYFPA + + FQNV +LFGV++++K L  L+  ++ +A
Sbjct: 33  TSGACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILEKLDETQKPEA 92

Query: 251 VECMIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVLRQLRLCR 299
           ++ +IF++  R      GC  +  +LQ  I   E + + V  QL+L R
Sbjct: 93  MKSIIFQSYVRDRSPVHGCLGVTQQLQYMIWFAEEELKAVNSQLQLYR 140

[Close]

BLAST of Lsi08G015840.1 vs. Swiss-Prot
Match: LBD7_ARATH (LOB domain-containing protein 7 OS=Arabidopsis thaliana GN=LBD7 PE=2 SV=1)

HSP 1 Score: 96.3 bits (238), Expect = 7.3e-19
Identity = 49/115 (42.61%), Postives = 67/115 (58.26%), Query Frame = 1


Query: 194 ACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLEPDKRFKAVEC 253
           ACAACK QR+KC  +C LA YFP +    F N  KLFGV N+ K L  +E  +R  A+E 
Sbjct: 13  ACAACKHQRKKCKKNCILARYFPQDGTNKFLNAHKLFGVSNITKMLKRIEESQRDIAMEN 72

Query: 254 MIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVLRQLRLCRQTTAAAISQR 309
           +I+ AN RA D  GG Y+ I  L+ +I  ++T+  L  +Q+ +CR        QR
Sbjct: 73  LIYHANARALDPVGGVYRTICDLKCKIEFVQTELNLTRQQIDMCRSLAQEQHRQR 127

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BLAST of Lsi08G015840.1 vs. Swiss-Prot
Match: LBD6_ARATH (LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-17
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 1


Query: 189 NTTQAACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLEPDKRF 248
           ++T + CAACKF RRKC  +C  APYFP ++ Q F NV K+FG  NV K L +L P +R 
Sbjct: 4   SSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQRE 63

Query: 249 KAVECMIFEANCRASDLAGGCYKIIAKLQSEITLLE 285
            AV  + +EA+ R  D   GC  +I+ LQ ++  L+
Sbjct: 64  DAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQ 99

[Close]

BLAST of Lsi08G015840.1 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 3.1e-17
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 1


Query: 195 CAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLEPDKRFKAVECM 254
           CAACK  RR+C+ DC  +PYFPA+  Q F NV ++FG  NV K L +L   +R  AV  M
Sbjct: 14  CAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSM 73

Query: 255 IFEANCRASDLAGGCYKIIAKLQSEITLLETQ 287
           ++EAN R  D   GC   I+ LQ +I +L+ Q
Sbjct: 74  VYEANARVRDPVYGCVGAISSLQQQIDVLQAQ 105

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BLAST of Lsi08G015840.1 vs. TrEMBL
Match: A0A0A0LNK6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351680 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 6.2e-65
Identity = 131/171 (76.61%), Postives = 143/171 (83.63%), Query Frame = 1


Query: 190 TTQA-ACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLEPDKRF 249
           TTQA ACAACKF RRKCS +CPLAPYFPANRLQDF+NVRKLFGVKNVLKTLA L+   RF
Sbjct: 25  TTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRF 84

Query: 250 KAVECMIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVLRQLRLCRQTTAAAISQR 309
           KA ECMIFEANCRA DL GGC +II +LQ+EI LLE QHR +LRQL++ RQ TAAAISQ 
Sbjct: 85  KAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQ-TAAAISQL 144

Query: 310 GAIRSEFDFDCKPGLTALLLDCDYSEDWIRKEYCNFNMMENEVSFPKALTH 360
           GAI SEFD DCK GLT LLLDCDYSEDWIRKE+C+ N   NE SF KALT+
Sbjct: 145 GAIPSEFDSDCKHGLTPLLLDCDYSEDWIRKEHCDMN---NEASFSKALTN 191

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BLAST of Lsi08G015840.1 vs. TrEMBL
Match: A0A061GRZ6_THECC (LOB domain-containing 22-like protein OS=Theobroma cacao GN=TCM_037293 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.1e-26
Identity = 60/115 (52.17%), Postives = 84/115 (73.04%), Query Frame = 1


Query: 194 ACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLEPDKRFKAVEC 253
           ACAACK+QRRKC+ +C LAP+FPAN  +DF N  KLFGV N+LK + +L+P +R  A++ 
Sbjct: 15  ACAACKYQRRKCTRNCLLAPFFPANHQKDFLNAHKLFGVSNILKIIRNLDPPQRLIAMKS 74

Query: 254 MIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVLRQLRLCRQTTAAAISQR 309
           ++FEAN RA+D  GGCY II+ L+ +I  ++ +  LVL QL +C+  TAAA  Q+
Sbjct: 75  IVFEANTRANDPVGGCYGIISDLKMQIDWVKAERDLVLHQLAICKAQTAAASQQQ 129

[Close]

BLAST of Lsi08G015840.1 vs. TrEMBL
Match: M0SHV1_MUSAM (Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 9.6e-26
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 1


Query: 181 NEESGVKDNTTQAACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLA 240
           N +S        +ACAACK+QRRKC  DC LAPYFPAN+ Q F N  +LFGV N++K + 
Sbjct: 90  NNKSSSSQPAANSACAACKYQRRKCKPDCLLAPYFPANQQQKFLNAHRLFGVSNIVKIIR 149

Query: 241 DLEPDKRFKAVECMIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVLRQLRLCRQT 300
           DL+P +R +A+  +I++++ RA D  GGCY+ I  L+ +I    T+   VLRQL LCR  
Sbjct: 150 DLDPFQRNEAMSTIIYQSDMRAHDPVGGCYRYIRDLERQIDHDSTELAFVLRQLALCRAH 209

Query: 301 TAAAISQRGAIRSEFDFDCKPGL 324
           TA  I+  G      D D  P L
Sbjct: 210 TAQTITP-GIPTLAPDLDVNPNL 231

[Close]

BLAST of Lsi08G015840.1 vs. TrEMBL
Match: K3YNE2_SETIT (Uncharacterized protein OS=Setaria italica GN=SETIT_015783mg PE=4 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 2.1e-25
Identity = 68/164 (41.46%), Postives = 94/164 (57.32%), Query Frame = 1


Query: 4   RGDCSGTATAEESGVKDNTTQAACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFG 63
           RG  S + TA   G    +T  ACAACK+QRRKC+ DCPLAPYFPA++ + F N  +LFG
Sbjct: 61  RGSSSNSGTAAGGGGGSGSTNQACAACKYQRRKCNQDCPLAPYFPADQQRRFLNAHRLFG 120

Query: 64  VKNVLKTLADLEPDKRFKAVECMIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVL 123
           V N+LKTL  L P+    A+  +I++++ RA+D  GGCY++I  L+ ++ +   +   VL
Sbjct: 121 VSNILKTLKRLRPELCADAMGTLIYQSDMRATDPVGGCYRLILSLERQLEIETAELSAVL 180

Query: 124 RQLRLCRQTTAAAIS----QRGAIRSEFDFDCKPGLTALLLDCD 164
             L L RQ  AAA +    Q        D D       LLLD +
Sbjct: 181 HNLALYRQAAAAAAAAIPPQEAGGAMAADLDVTSSNQPLLLDAE 224

[Close]

BLAST of Lsi08G015840.1 vs. TrEMBL
Match: C5YKR7_SORBI (Putative uncharacterized protein Sb07g019940 OS=Sorghum bicolor GN=Sb07g019940 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 6.2e-25
Identity = 61/133 (45.86%), Postives = 84/133 (63.16%), Query Frame = 1


Query: 4   RGDCSGTATAEESGVKDNTTQAACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFG 63
           RG  +   T   SG    +T  ACAACK+QRRKC+ DCPLAPYFPA++ + F N  +LFG
Sbjct: 56  RGSSTTGGTGGGSGSGSGSTNQACAACKYQRRKCNPDCPLAPYFPADQQRRFLNAHRLFG 115

Query: 64  VKNVLKTLADLEPDKRFKAVECMIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVL 123
           V N+LKTL  L P+    A+  +I++++ RA D  GGCY++I  L+ ++ +   +   VL
Sbjct: 116 VSNILKTLKKLRPELCADAMGTLIYQSDMRAQDPVGGCYRLILSLERQLEIETAELSAVL 175

Query: 124 RQLRLCRQTTAAA 137
             L LCRQ T AA
Sbjct: 176 HHLALCRQATTAA 188

[Close]

BLAST of Lsi08G015840.1 vs. TAIR10
Match: AT3G13850.1 (AT3G13850.1 LOB domain-containing protein 22)

HSP 1 Score: 110.9 bits (276), Expect = 1.6e-24
Identity = 53/115 (46.09%), Postives = 75/115 (65.22%), Query Frame = 1


Query: 184 SGVKDNTTQAACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLE 243
           S   +N+T  ACAACK+QRRKC+ DC LAPYFP +R + F N  KLFGV N+ K +  L 
Sbjct: 26  SSSNNNSTNQACAACKYQRRKCAPDCLLAPYFPHDRHRQFLNAHKLFGVSNITKIIKSLT 85

Query: 244 PDKRFKAVECMIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVLRQLRLCR 299
           P ++  A+  ++F+++ RA+D   GCY II KLQ +I     +  +VL+QL + R
Sbjct: 86  PPEKDAAMHTIMFQSDARANDPVDGCYGIIKKLQYQIEYTRNELEIVLQQLAMFR 140

[Close]

BLAST of Lsi08G015840.1 vs. TAIR10
Match: AT3G47870.1 (AT3G47870.1 LOB domain-containing protein 27)

HSP 1 Score: 97.4 bits (241), Expect = 1.9e-20
Identity = 48/108 (44.44%), Postives = 72/108 (66.67%), Query Frame = 1


Query: 191 TQAACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLEPDKRFKA 250
           T  ACAACK+QRR+C+ADCPLAPYFPA + + FQNV +LFGV++++K L  L+  ++ +A
Sbjct: 33  TSGACAACKYQRRRCAADCPLAPYFPAEQPKLFQNVHRLFGVRSIVKILEKLDETQKPEA 92

Query: 251 VECMIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVLRQLRLCR 299
           ++ +IF++  R      GC  +  +LQ  I   E + + V  QL+L R
Sbjct: 93  MKSIIFQSYVRDRSPVHGCLGVTQQLQYMIWFAEEELKAVNSQLQLYR 140

[Close]

BLAST of Lsi08G015840.1 vs. TAIR10
Match: AT1G72980.1 (AT1G72980.1 LOB domain-containing protein 7)

HSP 1 Score: 96.3 bits (238), Expect = 4.1e-20
Identity = 49/115 (42.61%), Postives = 67/115 (58.26%), Query Frame = 1


Query: 194 ACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLEPDKRFKAVEC 253
           ACAACK QR+KC  +C LA YFP +    F N  KLFGV N+ K L  +E  +R  A+E 
Sbjct: 13  ACAACKHQRKKCKKNCILARYFPQDGTNKFLNAHKLFGVSNITKMLKRIEESQRDIAMEN 72

Query: 254 MIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVLRQLRLCRQTTAAAISQR 309
           +I+ AN RA D  GG Y+ I  L+ +I  ++T+  L  +Q+ +CR        QR
Sbjct: 73  LIYHANARALDPVGGVYRTICDLKCKIEFVQTELNLTRQQIDMCRSLAQEQHRQR 127

[Close]

BLAST of Lsi08G015840.1 vs. TAIR10
Match: AT1G65620.1 (AT1G65620.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 91.7 bits (226), Expect = 1.0e-18
Identity = 43/96 (44.79%), Postives = 60/96 (62.50%), Query Frame = 1


Query: 189 NTTQAACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLEPDKRF 248
           ++T + CAACKF RRKC  +C  APYFP ++ Q F NV K+FG  NV K L +L P +R 
Sbjct: 4   SSTNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQRE 63

Query: 249 KAVECMIFEANCRASDLAGGCYKIIAKLQSEITLLE 285
            AV  + +EA+ R  D   GC  +I+ LQ ++  L+
Sbjct: 64  DAVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQ 99

[Close]

BLAST of Lsi08G015840.1 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 90.9 bits (224), Expect = 1.7e-18
Identity = 43/92 (46.74%), Postives = 57/92 (61.96%), Query Frame = 1


Query: 195 CAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLEPDKRFKAVECM 254
           CAACK  RR+C+ DC  +PYFPA+  Q F NV ++FG  NV K L +L   +R  AV  M
Sbjct: 14  CAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVSSM 73

Query: 255 IFEANCRASDLAGGCYKIIAKLQSEITLLETQ 287
           ++EAN R  D   GC   I+ LQ +I +L+ Q
Sbjct: 74  VYEANARVRDPVYGCVGAISSLQQQIDVLQAQ 105

[Close]

BLAST of Lsi08G015840.1 vs. NCBI nr
Match: gi|659087456|ref|XP_008444461.1| (PREDICTED: LOB domain-containing protein 22-like [Cucumis melo])

HSP 1 Score: 270.4 bits (690), Expect = 4.5e-69
Identity = 136/167 (81.44%), Postives = 145/167 (86.83%), Query Frame = 1


Query: 193 AACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLEPDKRFKAVE 252
           AACAACKF RRKCS +CPLAPYFPANRL+DF+NVRKLFGVKNVLK LA LEPD RFKAVE
Sbjct: 32  AACAACKFHRRKCSVECPLAPYFPANRLRDFENVRKLFGVKNVLKILAGLEPDNRFKAVE 91

Query: 253 CMIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVLRQLRLCRQTTAAAISQRGAIR 312
           CMIFEANCRA DLAGGCYKII+KLQSEI LLE QHRL+L QL++ RQ TAAAISQRGAIR
Sbjct: 92  CMIFEANCRAIDLAGGCYKIISKLQSEIALLEAQHRLILHQLQISRQ-TAAAISQRGAIR 151

Query: 313 SEFDFDCKPGLTALLLDCDYSEDWIRKEYCNFNMMENEVSFPKALTH 360
           SEFD DCK GLT+LLLDCD SEDWIRKEY N     NE SF KALT+
Sbjct: 152 SEFDSDCKHGLTSLLLDCDCSEDWIRKEYFNL----NEASFSKALTN 193

[Close]

BLAST of Lsi08G015840.1 vs. NCBI nr
Match: gi|778674284|ref|XP_011650178.1| (PREDICTED: LOB domain-containing protein 22-like [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 8.8e-65
Identity = 131/171 (76.61%), Postives = 143/171 (83.63%), Query Frame = 1


Query: 190 TTQA-ACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLEPDKRF 249
           TTQA ACAACKF RRKCS +CPLAPYFPANRLQDF+NVRKLFGVKNVLKTLA L+   RF
Sbjct: 25  TTQAPACAACKFHRRKCSVECPLAPYFPANRLQDFENVRKLFGVKNVLKTLAGLDSYNRF 84

Query: 250 KAVECMIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVLRQLRLCRQTTAAAISQR 309
           KA ECMIFEANCRA DL GGC +II +LQ+EI LLE QHR +LRQL++ RQ TAAAISQ 
Sbjct: 85  KAAECMIFEANCRALDLVGGCCQIIPRLQNEIALLEAQHRHILRQLQISRQ-TAAAISQL 144

Query: 310 GAIRSEFDFDCKPGLTALLLDCDYSEDWIRKEYCNFNMMENEVSFPKALTH 360
           GAI SEFD DCK GLT LLLDCDYSEDWIRKE+C+ N   NE SF KALT+
Sbjct: 145 GAIPSEFDSDCKHGLTPLLLDCDYSEDWIRKEHCDMN---NEASFSKALTN 191

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BLAST of Lsi08G015840.1 vs. NCBI nr
Match: gi|590574042|ref|XP_007012290.1| (LOB domain-containing 22-like protein [Theobroma cacao])

HSP 1 Score: 129.0 bits (323), Expect = 1.6e-26
Identity = 60/115 (52.17%), Postives = 84/115 (73.04%), Query Frame = 1


Query: 194 ACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLADLEPDKRFKAVEC 253
           ACAACK+QRRKC+ +C LAP+FPAN  +DF N  KLFGV N+LK + +L+P +R  A++ 
Sbjct: 15  ACAACKYQRRKCTRNCLLAPFFPANHQKDFLNAHKLFGVSNILKIIRNLDPPQRLIAMKS 74

Query: 254 MIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVLRQLRLCRQTTAAAISQR 309
           ++FEAN RA+D  GGCY II+ L+ +I  ++ +  LVL QL +C+  TAAA  Q+
Sbjct: 75  IVFEANTRANDPVGGCYGIISDLKMQIDWVKAERDLVLHQLAICKAQTAAASQQQ 129

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BLAST of Lsi08G015840.1 vs. NCBI nr
Match: gi|695014326|ref|XP_009393980.1| (PREDICTED: LOB domain-containing protein 16-like [Musa acuminata subsp. malaccensis])

HSP 1 Score: 125.9 bits (315), Expect = 1.4e-25
Identity = 65/143 (45.45%), Postives = 87/143 (60.84%), Query Frame = 1


Query: 181 NEESGVKDNTTQAACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFGVKNVLKTLA 240
           N +S        +ACAACK+QRRKC  DC LAPYFPAN+ Q F N  +LFGV N++K + 
Sbjct: 90  NNKSSSSQPAANSACAACKYQRRKCKPDCLLAPYFPANQQQKFLNAHRLFGVSNIVKIIR 149

Query: 241 DLEPDKRFKAVECMIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVLRQLRLCRQT 300
           DL+P +R +A+  +I++++ RA D  GGCY+ I  L+ +I    T+   VLRQL LCR  
Sbjct: 150 DLDPFQRNEAMSTIIYQSDMRAHDPVGGCYRYIRDLERQIDHDSTELAFVLRQLALCRAH 209

Query: 301 TAAAISQRGAIRSEFDFDCKPGL 324
           TA  I+  G      D D  P L
Sbjct: 210 TAQTITP-GIPTLAPDLDVNPNL 231

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BLAST of Lsi08G015840.1 vs. NCBI nr
Match: gi|514795762|ref|XP_004973381.1| (PREDICTED: uncharacterized protein LOC101782058 [Setaria italica])

HSP 1 Score: 124.8 bits (312), Expect = 3.1e-25
Identity = 68/164 (41.46%), Postives = 94/164 (57.32%), Query Frame = 1


Query: 4   RGDCSGTATAEESGVKDNTTQAACAACKFQRRKCSADCPLAPYFPANRLQDFQNVRKLFG 63
           RG  S + TA   G    +T  ACAACK+QRRKC+ DCPLAPYFPA++ + F N  +LFG
Sbjct: 61  RGSSSNSGTAAGGGGGSGSTNQACAACKYQRRKCNQDCPLAPYFPADQQRRFLNAHRLFG 120

Query: 64  VKNVLKTLADLEPDKRFKAVECMIFEANCRASDLAGGCYKIIAKLQSEITLLETQHRLVL 123
           V N+LKTL  L P+    A+  +I++++ RA+D  GGCY++I  L+ ++ +   +   VL
Sbjct: 121 VSNILKTLKRLRPELCADAMGTLIYQSDMRATDPVGGCYRLILSLERQLEIETAELSAVL 180

Query: 124 RQLRLCRQTTAAAIS----QRGAIRSEFDFDCKPGLTALLLDCD 164
             L L RQ  AAA +    Q        D D       LLLD +
Sbjct: 181 HNLALYRQAAAAAAAAIPPQEAGGAMAADLDVTSSNQPLLLDAE 224

The following BLAST results are available for this feature:

BLAST of Lsi08G015840.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LBD22_ARATH	2.9e-23	46.09	LOB domain-containing protein 22 OS=Arabidopsis thaliana GN=LBD22 PE=2 SV=1	[more]
LBD27_ARATH	3.3e-19	44.44	LOB domain-containing protein 27 OS=Arabidopsis thaliana GN=LBD27 PE=2 SV=1	[more]
LBD7_ARATH	7.3e-19	42.61	LOB domain-containing protein 7 OS=Arabidopsis thaliana GN=LBD7 PE=2 SV=1	[more]
LBD6_ARATH	1.8e-17	44.79	LOB domain-containing protein 6 OS=Arabidopsis thaliana GN=LBD6 PE=1 SV=1	[more]
LBD4_ARATH	3.1e-17	46.74	LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1	[more]

BLAST of Lsi08G015840.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LNK6_CUCSA	6.2e-65	76.61	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G351680 PE=4 SV=1	[more]
A0A061GRZ6_THECC	1.1e-26	52.17	LOB domain-containing 22-like protein OS=Theobroma cacao GN=TCM_037293 PE=4 SV=1	[more]
M0SHV1_MUSAM	9.6e-26	45.45	Uncharacterized protein OS=Musa acuminata subsp. malaccensis PE=4 SV=1	[more]
K3YNE2_SETIT	2.1e-25	41.46	Uncharacterized protein OS=Setaria italica GN=SETIT_015783mg PE=4 SV=1	[more]
C5YKR7_SORBI	6.2e-25	45.86	Putative uncharacterized protein Sb07g019940 OS=Sorghum bicolor GN=Sb07g019940 P...	[more]

BLAST of Lsi08G015840.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G13850.1	1.6e-24	46.09	LOB domain-containing protein 22	[more]
AT3G47870.1	1.9e-20	44.44	LOB domain-containing protein 27	[more]
AT1G72980.1	4.1e-20	42.61	LOB domain-containing protein 7	[more]
AT1G65620.1	1.0e-18	44.79	Lateral organ boundaries (LOB) domain family protein	[more]
AT1G31320.1	1.7e-18	46.74	LOB domain-containing protein 4	[more]

BLAST of Lsi08G015840.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659087456\|ref\|XP_008444461.1\|	4.5e-69	81.44	PREDICTED: LOB domain-containing protein 22-like [Cucumis melo]	[more]
gi\|778674284\|ref\|XP_011650178.1\|	8.8e-65	76.61	PREDICTED: LOB domain-containing protein 22-like [Cucumis sativus]	[more]
gi\|590574042\|ref\|XP_007012290.1\|	1.6e-26	52.17	LOB domain-containing 22-like protein [Theobroma cacao]	[more]
gi\|695014326\|ref\|XP_009393980.1\|	1.4e-25	45.45	PREDICTED: LOB domain-containing protein 16-like [Musa acuminata subsp. malaccen...	[more]
gi\|514795762\|ref\|XP_004973381.1\|	3.1e-25	41.46	PREDICTED: uncharacterized protein LOC101782058 [Setaria italica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR004883	LOB

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi08G015840	Lsi08G015840	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi08G015840.1.CDS.2	Lsi08G015840.1.CDS.2	CDS
Lsi08G015840.1.CDS.1	Lsi08G015840.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi08G015840.1	Lsi08G015840.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR004883	Lateral organ boundaries, LOB	PFAM	PF03195	DUF260	coord: 26..120 score: 2.4E-32coord: 194..288 score: 2.4
IPR004883	Lateral organ boundaries, LOB	PROFILE	PS50891	LOB	coord: 25..126 score: 21.95coord: 193..294 score: 2
None	No IPR available	PANTHER	PTHR31301	FAMILY NOT NAMED	coord: 1..143 score: 6.3
None	No IPR available	PANTHER	PTHR31301:SF27	LOB DOMAIN-CONTAINING PROTEIN 22-RELATED	coord: 1..143 score: 6.3