Lsi08G005920.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi08G005920.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_6
Location	chr08 : 14213491 .. 14218775 (-)
Sequence length	726

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTGATCTCACTTAAGTTTAGTTGGAATAAGCCGACCTCACCTCGATCTCAGGTCAAAGGGACCAACCCCCATGTTGCCTTTGTCGGGAAGAGGTTGACCCCACCCCCCTCCCCCGACCTTGACCATTTAAAGTTGAGAAGCCCAGTCTAATTTATGGTGCATGTCTGACACACCCACACTTTCATGTGTTTTACCTAATAACCTGATCCCTAAAAGGAATAGAAAAAAATCCAATGCCAAACCCCTGGTATATTATCATATAGGTAACTTAAATCTCACTCTCAAATGTCACAACTTTCACACCATTTATTTTGTTTTCTAACTTAAATATTAAAGTCTACAGGGCAAGCACCATATCGATGCGTATGATCACTCTTTCGCATCCACATCTATTAGCGTCACGTGAACGTAAAATATTGTTGGGTTTCTTTATTCGTTATTGCTCATACATTTATCATTAATTTTTATGTAATAAAACAATTATATAAATATGTTTCCAATTTTGATAGTACTAGTATAAATGGTCTAAAATTCAACTCACTTGAAAAAGGAAAAAACATATGAAAGTATCTAAAATTGAACAAGTCCCTCCCAAGTCCCAACCAAAATATTTAAAAATAAAATAAAATGAAAAACCAATTTTTTTTTAAAGAAGGGCAACGAGATCAATTACCCGTGTAACGTGTAGAACAAATAAAGTTCCACAACCGCACATAAAAAACAGGGCGCGAAATGGATCAGAGCGAGAGCGAAATCCGAGAAGTTGAAGAAACATGCTCCAACTCGGAGCTGCAACCTCTCATCGAGAGCCAGAATCCTAGTTTGAACTCCAAAACTGTGAAGATGAAGGTTCCGGAGGTTGAGATCCATCTTTATCGCCAGGGCAAAGGTCCGATCGATGTGTTTAAATCAAGTCTTGGTGGTTGGGATCAAGACCAGATTGAGGTCCGAGATATTCTTGACAAATACGGGTTCAAGTCCGTATTCGCCTTTAAACCTGACTCCGGTCGTGGCGTCCCGATTCGATTCAACCCTAGAAATGGCAGGTCTATACTGACTTACAGAGATGGAGCCGAAATTTTCATCGACGGAGAGCCTAAGGTAAAGGTTCACTGTTCTATTCGTTTCGATTTGCAAATTTGATCCATCTGGGGTTTTGGTCAGTTTGATCAAAGTCAAGAACGAGGAAGAAAAAAAATATATACAGTGTTTTATAAGTGTTTGAATTTGAAATTAGAGTTCGTTGCCTTAATGACCCTTCCGATAGACTATTTCTTATGGTGGGTGTTCACCTGCTGTTTGTTTAATGACATGTATTTATGCATTTGAGTTTTCTTTAGTTGGAATCGAGGTTTAGGAATTGAAAGTCTCGTGGATTAGAATCATAAGATAATATATGACACGTTTTTATGAATTTCGTAATTGATGATATGTGGGTGTAAGTTTAGGCGATCGCTCTCTAAGCCTATCCTTCATCTGGACTTTTACTCAAAGTAGACTTGAAATGAACTGTAAGAGCCGATTGATAATTGGAAATTTGTTCCTGAAGAATAGCAAATGATACAATGCGAGGGGAGTTCCTAGATTCATGGAGAATTGAGATATAGCTTATTGGTTCTTGCACAAGGTTGTATCCAATGAGTATGGACTTCACTTCAATATTTGGGATGCTAGTTAGGTTGCTAAGCACGAACTCCTCGAAAGCTATTTTTCCAATGTTTTCCGCTTCAATATTTGGTATTATCACATTCAATCCCAGTATATTTTATCCTTCGACTACTTATTTGGAGGGTCGTTGTTTCACAATTCACTTTCTAGAATAGCCTTATTCGACTTGGAGATGCTCGACCTTCTTTATATGAACCTCCTTGCATTCTCCTTTTTCCACTAAGCTTTGGGACGTTAACATTTCCGAGGAGGTGAAGTTATTTTCTTTTCCTGCCAATTATCCTTGGGGAAGTTCCCACACTGCTGATGCTTTAAGGGGTTGACCACTTTTGTGCCTGTGTTATCATGGTGCGTTATTTGCAGAAAGGCAGTGGAGTATGTGAACCGTATTCTTTACAGGAGTTTGTTAAATAACATCTCATTTGTGGAGAGTTTTTTTTTTTCCCCCAAACACTCTTCAGTGACGTTGGCTCCCGTGCTTTCTTAGATTTGTCATGGTATGATGGAGAAAATTGTCTTACATTTGCTCTTTCAGGACAATATCATCTTCTTGGATTTTACTATTCTCAGGAACATTTGGCTGTTGATGAAGAAGAGGATATTTTAGAGTATCCAAGGATTTTGGAAATTATTTGTGTTGTAGTTCACTTTAATGCTTCGTTGGACCCATGGTAAGTTTAGAGTGACTTTCTATCAGCAGTTTTGAAAAGGAAAATAAATTAGTTGGCTTCTTCTAGTAGTTAAAATAATGTTTAGAATTTTGGGAGTACTTTTGGTCGTGTAGCCAAAACATTATATATATAACTCTTTATTGGTTTAAATTTAGTTCAGTACCTTTGATGAACTGTTTCTCACTTTGTGAGTTGTTTCCTTTCATACAAGTTTAAAATCATTTGTTCATTTGACTATTAGTTTTATTTATTTATTTATTTATTTTATAACCGTGGGTATTTGGACATCTATGTTAGGTTGACCTAGTGGTCAATAGAAGCCATAACTAATAAATGACTTAGAGGAAATATGTTCAAACCATAGTGGCCACCTACATGGGATTTAATATCCTACATGTTACCTTGATAACCAAATATAGTAGGATTTGACAGTTTTCTCGTGAGATTAGTCAAGGTGCATGTTAGAAATCCCAACATTCAAATGATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATGCTGCAAGTATTTAATATTTTTCGTGTTAATCTGACATGACAACTAGTTGGCAGTGCAACTTCTGGCATTTGTAGAGTACTTAAAATTCTGTCTGTATGTTATGTTTTAAGTTTTTTAACACATGGCTTCAGGGCATCTAGGATTTACAACTCGTCTTGCTGTTAGGCTAACCTCATGATAAGATGTCTCTTAGGCAATGATCAAGAAGTTCAATTGCGAGGTTACATATCCGAATCCCAGTTTATAAAGATTTCAACATTCTCAAATTGCTCCAAGATTTTTTTTCCCACACTTGTCCCACTCTCAATCTTTTCTTGACTGCTATATGTATGTGTGCATATTTATCGACAAAGAGATTGTATTATTACATGGACAAGATGAAATTACAAGAAATAAAAGCACCCTACACCAGGAGTTGGATGAATACTTTCAAAATTAAGGGAGTCAAAGGAGTCTCCAAAGTATTAATACTCTCTATTGGACTCTTTTGCCATCTTTTGATTTATTTGGCCAGAATGGAACACGCAGGTTTTTGCTTAGTATAGAGTAGTTCTGGGGATATGACTCTCTGACTCTTTCCTCTTGGCTATATCTTAGTCCTATTTCATGCTCCTTTGTTCTCGACTTTTAACAATTCAAGATAATTCTTATTTTTGTTCTTTGCTTATTTGGAGGTTTCTCTTCTTCATCAGTTTGCTAATTTCCATCCATTTCCAATTAACACGGTAAGGTTATTAGCAAACTGATGCAGATATCACTAATTTTGTTCGATGCTGTTTATATTTATTCTTTTACATCAGATTCAACCATGTAATCCTTTGATCTCTTGTGGTCCACGTGGTCGTCCCTCAACCTGCGGTGCACGGGTTCGAGACCCAGTCCTACATCAGATTCAACCAAATGGCTAACTTCAGATTTTCATCTCTTTACTGCAGGATTCCCTGATCAAACCAGTAACCAGGATCATTTTCGGCGTGGCAATTATAACCATTTTGATAACGTTTCTCTCTCGAGACTCACAAGGGTGGATGAAGAAATTTAATGTCACTGGGAACTTCCCTCCTTGGATTCTAGCTTGTGTCGTTATCGTCTTTACGCGCTCGAGGAAGAGAACTAGGGACTTGCTTAAAAAGTACGGTTGGTAATTGTCTACTCCTCCCTCTACTTTTTTTTTTTTTTCCTTTTTTACAAGAAACAATCCTTTAATAGAAAATGGAAAGCAATTAATCAATACGTTGATTCTAGTTTCTCGATTTCAAACTTTGGAAATAGGAGACAGGATACTGTACCGTATTGCTAGCGATAATGGAACAGTGTTGGTCCATTGCTATCATAAATTCCCTGTCTTAATTTGTTCTTTGAAGTCTGTAGATAAGCAGCCTCTGTTTAGGGACAGAAAAGTGGACATGTTTGACTTGAATATGTTTGAGTTTGAGCCATGGTTTTAA

mRNA sequence

ATGGGGCGCGAAATGGATCAGAGCGAGAGCGAAATCCGAGAAGTTGAAGAAACATGCTCCAACTCGGAGCTGCAACCTCTCATCGAGAGCCAGAATCCTAGTTTGAACTCCAAAACTGTGAAGATGAAGGTTCCGGAGGTTGAGATCCATCTTTATCGCCAGGGCAAAGGTCCGATCGATGTGTTTAAATCAAGTCTTGGTGGTTGGGATCAAGACCAGATTGAGGTCCGAGATATTCTTGACAAATACGGGTTCAAGTCCGTATTCGCCTTTAAACCTGACTCCGGTCGTGGCGTCCCGATTCGATTCAACCCTAGAAATGGCAGGTCTATACTGACTTACAGAGATGGAGCCGAAATTTTCATCGACGGAGAGCCTAAGATTCAACCATGTAATCCTTTGATCTCTTGTGGTCCACGTGGTCGTCCCTCAACCTGCGGTGCACGGGATTCCCTGATCAAACCAGTAACCAGGATCATTTTCGGCGTGGCAATTATAACCATTTTGATAACGTTTCTCTCTCGAGACTCACAAGGGTGGATGAAGAAATTTAATGTCACTGGGAACTTCCCTCCTTGGATTCTAGCTTGTGTCGTTATCGTCTTTACGCGCTCGAGGAAGAGAACTAGGGACTTGCTTAAAAAGTACGATAAGCAGCCTCTGTTTAGGGACAGAAAAGTGGACATGTTTGACTTGAATATGTTTGAGTTTGAGCCATGGTTTTAA

Coding sequence (CDS)

ATGGGGCGCGAAATGGATCAGAGCGAGAGCGAAATCCGAGAAGTTGAAGAAACATGCTCCAACTCGGAGCTGCAACCTCTCATCGAGAGCCAGAATCCTAGTTTGAACTCCAAAACTGTGAAGATGAAGGTTCCGGAGGTTGAGATCCATCTTTATCGCCAGGGCAAAGGTCCGATCGATGTGTTTAAATCAAGTCTTGGTGGTTGGGATCAAGACCAGATTGAGGTCCGAGATATTCTTGACAAATACGGGTTCAAGTCCGTATTCGCCTTTAAACCTGACTCCGGTCGTGGCGTCCCGATTCGATTCAACCCTAGAAATGGCAGGTCTATACTGACTTACAGAGATGGAGCCGAAATTTTCATCGACGGAGAGCCTAAGATTCAACCATGTAATCCTTTGATCTCTTGTGGTCCACGTGGTCGTCCCTCAACCTGCGGTGCACGGGATTCCCTGATCAAACCAGTAACCAGGATCATTTTCGGCGTGGCAATTATAACCATTTTGATAACGTTTCTCTCTCGAGACTCACAAGGGTGGATGAAGAAATTTAATGTCACTGGGAACTTCCCTCCTTGGATTCTAGCTTGTGTCGTTATCGTCTTTACGCGCTCGAGGAAGAGAACTAGGGACTTGCTTAAAAAGTACGATAAGCAGCCTCTGTTTAGGGACAGAAAAGTGGACATGTTTGACTTGAATATGTTTGAGTTTGAGCCATGGTTTTAA

Protein sequence

MGREMDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNFPPWILACVVIVFTRSRKRTRDLLKKYDKQPLFRDRKVDMFDLNMFEFEPWF

Homology

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BLAST of Lsi08G005920.1 vs. TrEMBL
Match: A0A0A0K9G4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052730 PE=4 SV=1)

HSP 1 Score: 350.1 bits (897), Expect = 2.1e-93
Identity = 176/212 (83.02%), Postives = 184/212 (86.79%), Query Frame = 1


Query: 5   MDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKS 64
           MDQSESEIREVEET S SELQPL+E+ NPS NSK+VK KVPE+EIHL+RQGKGPIDVFKS
Sbjct: 1   MDQSESEIREVEETNSKSELQPLLETHNPSSNSKSVKTKVPEIEIHLFRQGKGPIDVFKS 60

Query: 65  SLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDG 124
           SLGGWDQDQ+EVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDG
Sbjct: 61  SLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDG 120

Query: 125 EPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKF 184
           EPK                      DSLIKPVTRIIFGVAIITILITFLSRDSQGWMKK 
Sbjct: 121 EPK----------------------DSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKL 180

Query: 185 NVTGNFPPWILACVVIVFTRSRKRTRDLLKKY 217
           N+TGNFPPWILACVVIVFTRSRKRT+DLLKKY
Sbjct: 181 NITGNFPPWILACVVIVFTRSRKRTKDLLKKY 190

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BLAST of Lsi08G005920.1 vs. TrEMBL
Match: W9QQI2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_002731 PE=4 SV=1)

HSP 1 Score: 261.2 bits (666), Expect = 1.3e-66
Identity = 131/212 (61.79%), Postives = 163/212 (76.89%), Query Frame = 1


Query: 7   QSESEIREVEETC-SNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSS 66
           + ESEI E+EET  ++S+      ++NPS   KTV+ KVPEVE+HL+R+GKGPIDVFKSS
Sbjct: 20  KDESEIGEIEETAMASSDGSSPTPNRNPSSTPKTVRTKVPEVEVHLFRRGKGPIDVFKSS 79

Query: 67  LGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDGE 126
           LGGWDQDQ+EVR+ILDKYG KS+FAF P SGRGVPIRF+PRNGRSIL Y+DG+ I++DGE
Sbjct: 80  LGGWDQDQLEVRNILDKYGLKSLFAFNPASGRGVPIRFHPRNGRSILPYKDGSVIYVDGE 139

Query: 127 PKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFN 186
           PK                      DSLIKPVT+I+ GVA++T+LITF+ +++  WM+K N
Sbjct: 140 PK----------------------DSLIKPVTKILLGVAVMTLLITFVLKETPQWMQKLN 199

Query: 187 V-TGNFPPWILACVVIVFTRSRKRTRDLLKKY 217
           V  GNFPPWILACVVIVFTR RKRT+DLL+K+
Sbjct: 200 VFGGNFPPWILACVVIVFTRMRKRTKDLLQKH 209

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BLAST of Lsi08G005920.1 vs. TrEMBL
Match: A0A0B0M6H1_GOSAR (WD repeat-containing protein OS=Gossypium arboreum GN=F383_14671 PE=4 SV=1)

HSP 1 Score: 246.5 bits (628), Expect = 3.3e-62
Identity = 121/212 (57.08%), Postives = 152/212 (71.70%), Query Frame = 1


Query: 14  EVEETCSNSELQPLIESQ--------NPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSS 73
           E E +    E++PL++          NP+ N  TVK +VPEVEI LYRQGKGP+DVFKSS
Sbjct: 2   ETENSKETGEIEPLLQDPRDEPKSEANPNPNPSTVKTRVPEVEIRLYRQGKGPMDVFKSS 61

Query: 74  LGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDGE 133
           LGGWDQ+Q+EVRDILDKYG KS++AF P SGRGVPIRF+PRNGRSIL Y+DG+ + IDGE
Sbjct: 62  LGGWDQNQLEVRDILDKYGLKSIYAFSPQSGRGVPIRFHPRNGRSILGYKDGSVVHIDGE 121

Query: 134 PKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFN 193
           P                      +DSLIKPVT+++ GVA IT+LIT +++D+  WMKK  
Sbjct: 122 P----------------------QDSLIKPVTKVLVGVAAITLLITLVAKDTPEWMKKLK 181

Query: 194 VT-GNFPPWILACVVIVFTRSRKRTRDLLKKY 217
           ++ G+FPPW+LACVVIVFTR RKRT+D  KK+
Sbjct: 182 ISGGDFPPWLLACVVIVFTRMRKRTKDFFKKF 191

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BLAST of Lsi08G005920.1 vs. TrEMBL
Match: B9SM88_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0297040 PE=4 SV=1)

HSP 1 Score: 245.7 bits (626), Expect = 5.6e-62
Identity = 128/213 (60.09%), Postives = 155/213 (72.77%), Query Frame = 1


Query: 11  EIREVEETCSNSELQP-----LIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSS 70
           EI+E+EET +  E  P      I + +PS  +KTV+ KVPE+EIH+YRQGKGPI+VFKSS
Sbjct: 2   EIKEMEET-NTKESSPGPNPNPIPNVSPSTKAKTVRTKVPEIEIHVYRQGKGPIEVFKSS 61

Query: 71  LGGWDQDQIEVRDILDKYGFKSVFAFKP-DSGRGVPIRFNPRNGRSILTYRDGAEIFIDG 130
           LGGWDQDQ+EVR+IL+KYGFKSV+AF P  SGRG PIRFNPRNGRS+L YRDG+ I+IDG
Sbjct: 62  LGGWDQDQLEVREILEKYGFKSVYAFSPGGSGRGAPIRFNPRNGRSLLGYRDGSVIYIDG 121

Query: 131 EPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKF 190
           EPK                      DSLIKPVT+I+FGVA+IT  IT + ++   W+K  
Sbjct: 122 EPK----------------------DSLIKPVTKILFGVAVITFFITMVLKEPPQWIKNS 181

Query: 191 NV-TGNFPPWILACVVIVFTRSRKRTRDLLKKY 217
           N+  G+FPPWILAC VIVFTR RKRTRD LKK+
Sbjct: 182 NLFGGSFPPWILACAVIVFTRMRKRTRDFLKKH 191

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BLAST of Lsi08G005920.1 vs. TrEMBL
Match: I1MP14_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_16G160100 PE=4 SV=1)

HSP 1 Score: 243.8 bits (621), Expect = 2.1e-61
Identity = 126/215 (58.60%), Postives = 153/215 (71.16%), Query Frame = 1


Query: 4   EMDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFK 63
           E D+    + E+EE  ++      +E +  S   K V+ KVPE EIHLYRQGKGP+ VFK
Sbjct: 2   EDDEKTPLVGEIEEVDASP-----VEEEGTSEREKRVRTKVPEAEIHLYRQGKGPVAVFK 61

Query: 64  SSLGGWDQDQIEVR-DILDKYGFKSVFAFKPDS-GRGVPIRFNPRNGRSILTYRDGAEIF 123
           S+LGGW+QDQ+E+R DIL+KYG KSVFAF P + GRGVP+RFNPRNGRSILTYRDGA ++
Sbjct: 62  SALGGWEQDQLEIREDILEKYGMKSVFAFNPTAGGRGVPVRFNPRNGRSILTYRDGAVVY 121

Query: 124 IDGEPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWM 183
           +DGEPK                      DSL+KPVTRI+ GVA+IT +IT +SRD+  W+
Sbjct: 122 LDGEPK----------------------DSLVKPVTRILVGVALITFMITLVSRDTPNWL 181

Query: 184 KKFNVTG-NFPPWILACVVIVFTRSRKRTRDLLKK 216
           KK N +G NFPPWILACVVIVFTR RKRTRD LKK
Sbjct: 182 KKLNFSGVNFPPWILACVVIVFTRMRKRTRDFLKK 189

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BLAST of Lsi08G005920.1 vs. TAIR10
Match: AT1G71780.1 (AT1G71780.1 unknown protein)

HSP 1 Score: 236.9 bits (603), Expect = 1.3e-62
Identity = 118/206 (57.28%), Postives = 144/206 (69.90%), Query Frame = 1


Query: 13  REVEETCSNSELQPLIESQNPS--LNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWD 72
           +E+EET       PL+E+  P   L S T   KVPEVEIHLY+ GKGPIDVFKS+LGG++
Sbjct: 18  QEIEETT------PLLENSQPESELRSTTAAAKVPEVEIHLYKCGKGPIDVFKSNLGGYE 77

Query: 73  QDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDGEPKIQP 132
           QDQ+EVR IL+KYG K++FAF  + GR VPIRF+PRNGRS+L YRDGA I+IDGEP    
Sbjct: 78  QDQLEVRSILEKYGLKAIFAFNVEKGRAVPIRFHPRNGRSVLPYRDGAVIYIDGEP---- 137

Query: 133 CNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVTGNF 192
                             +DSL+KP+TRII GV I+T+LITFL +D   W+K     G F
Sbjct: 138 ------------------QDSLLKPITRIILGVVIVTLLITFLLKDPPAWIKNNISIGTF 195

Query: 193 PPWILACVVIVFTRSRKRTRDLLKKY 217
           PPW+LAC+VIVFTR+RKRTRD  KKY
Sbjct: 198 PPWVLACIVIVFTRARKRTRDFFKKY 195

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BLAST of Lsi08G005920.1 vs. NCBI nr
Match: gi|659113694|ref|XP_008456707.1| (PREDICTED: uncharacterized protein LOC103496571 [Cucumis melo])

HSP 1 Score: 354.4 bits (908), Expect = 1.6e-94
Identity = 179/212 (84.43%), Postives = 185/212 (87.26%), Query Frame = 1


Query: 5   MDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKS 64
           MDQSE+EIREV+ET S SELQPL+E+QNPS NSKTVK KVPEVEIHLYRQGKGPIDVFKS
Sbjct: 1   MDQSETEIREVQETNSKSELQPLLETQNPSSNSKTVKTKVPEVEIHLYRQGKGPIDVFKS 60

Query: 65  SLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDG 124
           SLGGWDQDQ+EVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDG
Sbjct: 61  SLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDG 120

Query: 125 EPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKF 184
           EPK                      DSLIKPVTRIIFGVAIITILITFLSRDSQGWMKK 
Sbjct: 121 EPK----------------------DSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKL 180

Query: 185 NVTGNFPPWILACVVIVFTRSRKRTRDLLKKY 217
           N+TGNFPPWILACVVIVFTRSRKRTRDLLKKY
Sbjct: 181 NITGNFPPWILACVVIVFTRSRKRTRDLLKKY 190

[Close]

BLAST of Lsi08G005920.1 vs. NCBI nr
Match: gi|449446369|ref|XP_004140944.1| (PREDICTED: uncharacterized protein LOC101218374 [Cucumis sativus])

HSP 1 Score: 350.1 bits (897), Expect = 3.0e-93
Identity = 176/212 (83.02%), Postives = 184/212 (86.79%), Query Frame = 1


Query: 5   MDQSESEIREVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKS 64
           MDQSESEIREVEET S SELQPL+E+ NPS NSK+VK KVPE+EIHL+RQGKGPIDVFKS
Sbjct: 1   MDQSESEIREVEETNSKSELQPLLETHNPSSNSKSVKTKVPEIEIHLFRQGKGPIDVFKS 60

Query: 65  SLGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDG 124
           SLGGWDQDQ+EVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDG
Sbjct: 61  SLGGWDQDQLEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDG 120

Query: 125 EPKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKF 184
           EPK                      DSLIKPVTRIIFGVAIITILITFLSRDSQGWMKK 
Sbjct: 121 EPK----------------------DSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKL 180

Query: 185 NVTGNFPPWILACVVIVFTRSRKRTRDLLKKY 217
           N+TGNFPPWILACVVIVFTRSRKRT+DLLKKY
Sbjct: 181 NITGNFPPWILACVVIVFTRSRKRTKDLLKKY 190

[Close]

BLAST of Lsi08G005920.1 vs. NCBI nr
Match: gi|703072992|ref|XP_010089430.1| (hypothetical protein L484_002731 [Morus notabilis])

HSP 1 Score: 261.2 bits (666), Expect = 1.8e-66
Identity = 131/212 (61.79%), Postives = 163/212 (76.89%), Query Frame = 1


Query: 7   QSESEIREVEETC-SNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSS 66
           + ESEI E+EET  ++S+      ++NPS   KTV+ KVPEVE+HL+R+GKGPIDVFKSS
Sbjct: 20  KDESEIGEIEETAMASSDGSSPTPNRNPSSTPKTVRTKVPEVEVHLFRRGKGPIDVFKSS 79

Query: 67  LGGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDGE 126
           LGGWDQDQ+EVR+ILDKYG KS+FAF P SGRGVPIRF+PRNGRSIL Y+DG+ I++DGE
Sbjct: 80  LGGWDQDQLEVRNILDKYGLKSLFAFNPASGRGVPIRFHPRNGRSILPYKDGSVIYVDGE 139

Query: 127 PKIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFN 186
           PK                      DSLIKPVT+I+ GVA++T+LITF+ +++  WM+K N
Sbjct: 140 PK----------------------DSLIKPVTKILLGVAVMTLLITFVLKETPQWMQKLN 199

Query: 187 V-TGNFPPWILACVVIVFTRSRKRTRDLLKKY 217
           V  GNFPPWILACVVIVFTR RKRT+DLL+K+
Sbjct: 200 VFGGNFPPWILACVVIVFTRMRKRTKDLLQKH 209

[Close]

BLAST of Lsi08G005920.1 vs. NCBI nr
Match: gi|720016179|ref|XP_010261073.1| (PREDICTED: uncharacterized protein LOC104599989 [Nelumbo nucifera])

HSP 1 Score: 249.6 bits (636), Expect = 5.6e-63
Identity = 120/204 (58.82%), Postives = 150/204 (73.53%), Query Frame = 1


Query: 14  EVEETCSNSELQPLIESQNPSLNSKTVKMKVPEVEIHLYRQGKGPIDVFKSSLGGWDQDQ 73
           E+EE+C +S+  P      P    KT++ KVPEVEIHL+R+GKGPI++FKSSLGGWDQD+
Sbjct: 8   EIEESCKSSDESP------PKPMPKTIRTKVPEVEIHLFRRGKGPIEIFKSSLGGWDQDR 67

Query: 74  IEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDGEPKIQPCNP 133
           +EV DIL+KYG KS+FAF P SGR VPIRFN +NGRS+L Y DG+ IFIDGEPK      
Sbjct: 68  LEVHDILEKYGLKSIFAFNPASGRSVPIRFNAKNGRSLLPYTDGSVIFIDGEPK------ 127

Query: 134 LISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNVT-GNFPP 193
                           DSL+KP+T+I+ G+AIITIL+  L ++S  WMK+FN+  GNFPP
Sbjct: 128 ----------------DSLVKPITKILLGIAIITILVAMLFKESPEWMKRFNILGGNFPP 183

Query: 194 WILACVVIVFTRSRKRTRDLLKKY 217
           W+LACVVIVFTR RKRT+D+LKKY
Sbjct: 188 WVLACVVIVFTRMRKRTKDVLKKY 183

[Close]

BLAST of Lsi08G005920.1 vs. NCBI nr
Match: gi|729439536|ref|XP_010521113.1| (PREDICTED: uncharacterized protein LOC104800097 [Tarenaya hassleriana])

HSP 1 Score: 246.9 bits (629), Expect = 3.6e-62
Identity = 123/210 (58.57%), Postives = 152/210 (72.38%), Query Frame = 1


Query: 9   ESEIREVEETCSNSELQPLIESQNPSLNSK--TVKMKVPEVEIHLYRQGKGPIDVFKSSL 68
           ESE  E+EET       PL++   P    +  +V+ KVPEVEIHLYR GKGPI+VFKS+L
Sbjct: 3   ESEASEIEETT------PLLDESQPDSEQRPRSVRTKVPEVEIHLYRCGKGPIEVFKSNL 62

Query: 69  GGWDQDQIEVRDILDKYGFKSVFAFKPDSGRGVPIRFNPRNGRSILTYRDGAEIFIDGEP 128
           GGW+QDQ+EVR ILDKYGFKS++AF  +SGRG PIRF+PRNGRS+L Y+DGA I+IDGEP
Sbjct: 63  GGWEQDQLEVRTILDKYGFKSIYAFNVESGRGAPIRFHPRNGRSMLPYKDGAVIYIDGEP 122

Query: 129 KIQPCNPLISCGPRGRPSTCGARDSLIKPVTRIIFGVAIITILITFLSRDSQGWMKKFNV 188
           K                      DSL++P+TRII GVA+IT+LITFL +D   W+KK   
Sbjct: 123 K----------------------DSLLQPITRIILGVAVITLLITFLVKDPPEWIKKNVS 182

Query: 189 TGNFPPWILACVVIVFTRSRKRTRDLLKKY 217
            GNFPPW+LAC+VIVFTR+RKRTR+ L+KY
Sbjct: 183 KGNFPPWVLACMVIVFTRARKRTREFLRKY 184

The following BLAST results are available for this feature:

BLAST of Lsi08G005920.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi08G005920.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9G4_CUCSA	2.1e-93	83.02	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G052730 PE=4 SV=1	[more]
W9QQI2_9ROSA	1.3e-66	61.79	Uncharacterized protein OS=Morus notabilis GN=L484_002731 PE=4 SV=1	[more]
A0A0B0M6H1_GOSAR	3.3e-62	57.08	WD repeat-containing protein OS=Gossypium arboreum GN=F383_14671 PE=4 SV=1	[more]
B9SM88_RICCO	5.6e-62	60.09	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0297040 PE=4 SV=1	[more]
I1MP14_SOYBN	2.1e-61	58.60	Uncharacterized protein OS=Glycine max GN=GLYMA_16G160100 PE=4 SV=1	[more]

BLAST of Lsi08G005920.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G71780.1	1.3e-62	57.28	unknown protein	[more]

BLAST of Lsi08G005920.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113694\|ref\|XP_008456707.1\|	1.6e-94	84.43	PREDICTED: uncharacterized protein LOC103496571 [Cucumis melo]	[more]
gi\|449446369\|ref\|XP_004140944.1\|	3.0e-93	83.02	PREDICTED: uncharacterized protein LOC101218374 [Cucumis sativus]	[more]
gi\|703072992\|ref\|XP_010089430.1\|	1.8e-66	61.79	hypothetical protein L484_002731 [Morus notabilis]	[more]
gi\|720016179\|ref\|XP_010261073.1\|	5.6e-63	58.82	PREDICTED: uncharacterized protein LOC104599989 [Nelumbo nucifera]	[more]
gi\|729439536\|ref\|XP_010521113.1\|	3.6e-62	58.57	PREDICTED: uncharacterized protein LOC104800097 [Tarenaya hassleriana]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi08G005920	Lsi08G005920	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi08G005920.1.CDS.5	Lsi08G005920.1.CDS.5	CDS
Lsi08G005920.1.CDS.4	Lsi08G005920.1.CDS.4	CDS
Lsi08G005920.1.CDS.3	Lsi08G005920.1.CDS.3	CDS
Lsi08G005920.1.CDS.2	Lsi08G005920.1.CDS.2	CDS
Lsi08G005920.1.CDS.1	Lsi08G005920.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi08G005920.1	Lsi08G005920.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 5..25 scor
None	No IPR available	PANTHER	PTHR35475	FAMILY NOT NAMED	coord: 1..127 score: 6.6E-101coord: 150..221 score: 6.6E
None	No IPR available	PANTHER	PTHR35475:SF1	SUBFAMILY NOT NAMED	coord: 1..127 score: 6.6E-101coord: 150..221 score: 6.6E