Lsi06G006580.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi06G006580.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	AT1G65230-like protein
Location	chr06 : 9987264 .. 9999082 (-)
Sequence length	1294

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTACCTGCGTTTCCTCTCCTTCTCTCGCCGCTCCATCTGCAGCGGCCGCCACCGCAATCATCCGCCGCAAGACCCGCCTTGGCGCCGCCACACCTCTCGTCGTTCCTCCTCCTCACTGTCGCCATGTTCTTCCCCTCAGAGGCCTGCAATTTTTCTCCACACTCTTTCTTTTTAATCGCGATTTCTCAATGTCTCTGATAGGTTTAGGGTTTCTGTTTTTCAGCTGCCGCAAACGATTCGAACAGCACCGAGCAATTGACGGTGGAATCCGCCGTCGAAAGATCGGAGGCTGATAAGATCGTAGACGGCATGGATTTCGGTGAGCTCTGCAACGAATTTGAGTGCATCAGTAGCCCCTTGGTTGAATCTACTGCCAGGCAACTTGCTAGAGACATTCTTCAACTTCGCCAAGGCGATCGGTCTCTTGGAAAATTTGCCGTCTTTGTCAAGTATAAGGTATTGAATTTTGGCCCTAATTTTTATGAATTTCATCGACAAATTGCTTTGCTGTGATTGTTCTGAACTGTTTTGATTATGAAATTTAGAGGGAAAATGATTGAAATTAGTTCAAATTGTGAAATGCAGGATCCGATTAGGAAATTCAGGGGTCGGGAAAAGTACAAAAGACAACTCTGGGCGACCATTGCGCTTGAGAATCCAACTACGGTAATACTTTTTCTTATCTCATGAGTATTACAATATTGATGAAAGAGTGAAAAAGTCCTTAAAACGTATGAGGTTGGAATTTCATTTTGTTAACGATTCTGTTTTTAATTTTTAGATTTTGAAAATTAAGTCTAATTTTTCAAATTTTAGCTTGATTTTTTTTTTTAAATTGATAAAAGTAGATAAAAAGATAAAAAAATTTAGAGATATAAGAAATGTTTATAGACTCAATTTTAAAAAATAATAAACCAAAAATCAAATGGTTACCAAACAAAACCTTAACTTTTTACCTTGATTTTTTAACAAATTAAAATGGGACTTAGAAAACGTAAATTTAAACCAAAATAGTTTGAATATTCTAATCTAAAATAAGACCATATTTCTTGAAATGGGTATCGGACAAATGAATATTAGGTGACAAAATAATATACAATTTTTAAATTTGAAATTCTAAACTAGACGACATTTTGTTGGTCTAAGAACTATTTTATTTTTTATTTTTTCCGTGAGTTCTAGAATTTAAATAAAAAATTTGGAAATCTATGGAATAACATAGATAAAATAAAAAATTTTAAATGGAAGAACTTAAATGGATTTAAACCAATTTAGAATAAGTTTAGATTAGATAAGTAATGTATTCTGTTTGTTTACTTCAATTAGAAAGAAGTTCCTCCACAATTCCTTTGACCATCTTTTGCTTTTTATGATATTATTTTTATATTAGATAATTGTAATGAGTAGCAATTTTTAAGAATAATAACTAAGTGTATAACAATAATTTTAAAAAATTGCAAATATAGTCTATCAGCGATAAACTTCTATCGTTGATAGACTAGTCTATCAGTGATAGACCGGTCACCTAGACCTTAAAAGTCTACTAGTGATAGAAGTCTAACTTTGTTATATTTGTAATTTTTTTAAATGTTGCAATATATGCTAATACTTTGAATTTGATTGCTATATTTGCAACTTTTCTTTTATGTTAAAACTTTTTTTCTTTTCTAAATTTTAGAAAGAATAAAGCTTTGTAACTAACTTTTTTATAACAATTTTTTTAAAAATATATTATTAACAATTAATCTATATTTAAGAATTGTTTTCAAACTATTGGCTAAAGTTTCAAAATTCATTCGATAACATTTCTATTTTTTTTTTGTCCTTTTATTTTTAAAAAACAATAATAATATGGAAAAATTTTAAAAATAGAAAAATAAAGGAAACTATTTACACAAAATAACAAAATTTTTAGATAGTTGTGATAGACGCAGATAGAAGTCTATCAGGATCTATCAGTGATAGAAATGATAGAAGTCTATCACTGATAGATGCTGATAGAAGTCTATCAATGTCTACCTGTGTTTTTTTGCTATTTTCTGTAAATAGTTGGACACCTTTTCTATTTGTGAAAATTTTCCTAATAATATATATATATATATATATATATTATTAGGAAAATTTTCTATTTGTGAAAACTAAACATATTATTATATAATACTTTTAGTTTTCTCTTTTTGAAAAACAGAAAATAAAAATATATTTGACAACGTTTTCTATATTTTTAGTTTTTTTTCTGTTTAATAATAATATAAGATTTTAAAACCTCTATGTGACAATTATCGTATCACAAATTTATTAGAAAAATTACTACAAACAGAAAAAATATCAAACTATTTACAAATATAGAAAATTTTTACTATCTATCAGCGATAGACCGCGATAGAATTCTATCATTTGACATATAGACTTCCATCGTTGTTTATCGCGGTCTATCATTGATAGACAATAAAATTTTTCTATATTTATAAATAGTTTTGACTCATTTTTTTATATTTGAAAACAAATTCAATTTATTATTTAATTATGAAAATAAACTATGTATTTTTAAAATTTAAATAAAATAGTTTTCAGACTTTATCATCATACCCATAGTTATGTGGATATTTGAGAGAGATATTAAAGGGAACAAACAGAAAGATCAATTAGAGATACACGTATAAGTGATTTGAACTTCTTACCTTTGGGTGGACGTTTTAATTCCTTATGGAGCTATACTTAGGTTAGTAAGAGAGAGAAAGTGAGGCTACTAAGATAGGGAAATTTTTTACATCTCTATTTTGTCCTTACAACTGTTTATAATTCCTACTTTGTCCTTTGTCATCACTATACGGATCGAGGTAATTATATGCGAAGTGATGTATTCTTTTATGTATGGGTGTGATCTAGACCATAAATATGAAAAATCACGATCTAACAATATAGACATGTTTGAGCGGAGAGTCACGTCCTTTCCCAGTTACAACTATTTGGGTAGAAGGGGTATACCTTTTCGTGTATGGGTGTGATGTAGACCATATATATGAGAAATCACGATCTAATAGTAGAGATATGTTCAAACAAAGAGTCACGTCTTTTGCTACGTTACAACTATTTAGGTCGAAGACAGTATATTTCATTAATGGGTGTGATTTAGACCATAGATATGAAACAAAAAACATCAATATCTAACACTGGAGATATATTTGATCAGACAATCATAAATTCCTATTTTGTATTTTTTTTCTTCAAATAGTTACTACTATTGGAGTCAAACAATGTAAAAGTTATTTTATATATTAATTATAATCTTTTTAACTATTAGTGAACTAATCTAAGTCTACACGGTTAATCCTAATCCGTATGGTTTGTAACGACAGAGTGTGCAAGAAATGGTGATGGTGTCGACAAGCATACTAAACATCAAGTGGACGATCAAAGGGAAACCTAAATCCTTGGTTTCAGCCATAGGAGATCTCATTATCAAAGTTGATTCACAGTTCACTCTCAACCAAATCAGTGGCCAAGTTATCGAACACGAAGAGCGTTGGGACGTATCGAGTTCTTCTGCCATTTCCCAAGCTTTCTTTTGGGCCTCGCGCTATCTCTTTGCCTCCGCCGAGGCGGGAAAGGACTTTGCTGATTCTGTCAGCAGCCTCACCGGCCGAGTCTCTACTGAGAAACAGAACTTGGAAATGTTTCCTGACCCTTCCGGTGATCCTACCAAGGTTAGTGTTCTTTATCCTTTTTATTGTCTATCTTTATGAAGCTAAATTACTCTTCCCATTTTCACCAATGCTATTTTATTCATCTTCTTATTTTGAACTTCTGAAAATATAGCACTGGTTACTTAATCTTTTATGGTTTCTCATTTCTTTTTTGTAGAGGTCTTTTAGTAATGTTACTGTGTTTTGTTTTGGTTTTGGTTTTTGAGAAACATGTCTGATTGATTAAGATTTTCTATTTTTTTTAAAGATCTTTAAATTGGTAATAGCTAGTTGGTACTTTTTCATTTTCAGGGAGTATTTGTTTTTTTTTTAAAAAAAAATTTCGGGGTTAATGTTTCTTGTTTCAAGTTTTCGTGAAATGTGTATTCTCTTATGTCATGTTTGATAATAAATTTGTTTTTAGTTTTCTATTTTTGAAAATTAAGTTTGTTTCTTGCCAAATTTCTTAGGATAGTTTTCACATTTATTTATTAAAGAAAAGTTATTCCACAAACAAAAATAAGTTTTTAAAATGGATTATTTTTAGTTTTCAAAACTTGGCTTGATTTTTGAAAATATTGGTAGAAAATTGTCGAAAAAAATAAATAAACTTACAAGTAAAAGTAGTGTTTATAAGCTTACTTTTCAAAAACTAAAAACAAAATACATAGGCCATGTTTGATACCTATTTGGTTTTTTATTTTTAATTTTTGAAACTTATGCCTACTAACATCTCTTCCACCTCTAAATTTCTTGCTTTATTTTATACTTTCTACTAATGTTTTTAAAAAACAAGTCAAGTGTTGAAAACTATAAAAAAGTGATTTTTAAAAACATGTTTTCGTTTTTAGAAATTGGCTAAGAATTCAACTCTTTTACTTAAGAAAGATGAAAACCATTATAAAAAATTAAGAGAAAATCGGTTTAATTTTATGATACTAAATAGCTATCAAAAGGAGGTCATAGTTATCAAATAGGAGTTAGGTAATAGTTGTTTACCTTTTGTTTCTCATTTGTCATAAATGCTCATTTAAAAGAATAGTTTACCTTATCTTGTTTCAAAAATAATTTTAAAAAGCTAATTTATAATCAAGTTTGCTTCTCATTTAAATTCTCTATGTAATATCAAAAGCACTCACTCAAAATTGTCAAGTTCAGAGTAACATATAGTTTGTTTTTGGTCAAAATACTTGATTAAAAAGTAAGTTAAATTATAAGTGACTTTTGTGGTTTATATCTATTTGGTCCTCGAGCTTTCAAAGGTGTCTAATAAATTCTTAAACTTTTAGATTTTTGTGTCTAATAATGCTCTAACACATTTGAAATTTATATAATTTAATTGCTCTATTAGATATAAATTTGAATTTTATGTCTAATAGAACTCTAAATATTCAATTTTATGTTGAGTAGATCCATCTATTTTAAAAAATATGTCAAAATCACTAGAAAGTAAAACTCGATGTTACTCTAGTCAAACAATTTTTTTTTTTTTTTGAAGTGCTTTTGACTAAATTACTTAGTTCAAAACACTTCCAAACACAACTTTAATCTATAAACGTCATTGAATATGTATGTAGTTCTTTCAAGGTGAGGACAACTTCCAAAGAGATGCATACCAATTTGCTCTGCTGCTGGCTATCCTCTATTTTGTTGTACAGTTTTTGAGGGCCACACTGTAAATGCAACGAAACTAAGGTACGTTCTCTATTCTACGCTACTCGAAACCTCATTGTGTATAATTAATATATATTTTTTACGACGAAAATTCATATTTTAGTCGGAGTCAAACAATAATGTATGTATGTAATTATGGATTTTTCTTTGCCTATAGTCTTGAATGCATGTCATAACTATAAGGGCTAATTGCATCCTAACATAAGCCAAAGATGTCTTCACTTATCTATATGCATATCTATATATAGCTATTGGAAATGAATTCAATCTATGGTAGTTACTGACCTAAAATTTAATATCATACGAATTTCTTTGGCATCCAAATGTTGTACGATTAGGTGGGTTGTCTTGTGAAATTAGTTGAGATGTGTGTAAATTGGCTAAAATACTCACAAATATTAAAAAAAAATGGCAAATATCAATTTATATCCCTAAGTTTTGGAGGTTGTATCAATTAAAACTCGGAATTAATGATTGTACATTAAACCCTGAATTTTCATAAGTGTATTAATTTATACTCTTCTCTAGATTTTGTTCGATCAAATATCGTGTGAAACTTATGATTTAAGTCAATTAAACTTGTCAATTTTAACAAATGGACATAATTAGAGTTAACGCACAAATGATTCTAAAAAAAATTATAATGAAGAGTTTAAATTGATTGATTTTTGAAAAGTTTTAGGAACAATTGATACATTTTTAAGTTTCATATAAGGTTTTTTTTAAACAAAATGTAATGGAAAGTATAAATTGATACACTTACAAAGAGATAAATTAATAATTTAAAAAAAAAATAAAAAAAATGGGCTCTTTTTAAATATAGAAAAATGAGCCAAATTATTTACAAATATAGAAAACTTTTACCGTCTATTAGTGATAGATCGCAATAGAATTCTATCGCTTCTATCGCTCAAGTGATAGAATTCATTTGCTTGAGCGATAGAAAGTGATAGAATTCTATTGCGGTCTATCACTGATAGACAGTGAAAATTTTCTATATTTATAAATAGTTTGATATTTTTTCTGTTTGTAGTAATTTTTCAAAAAAAAAAAAAAAACTATATTAATGAATAAATCTCCTCCATCTAAAGCCATATTTGGGCATGACAAAATACTTTTTTTTTTTAAAAAAAAAAAAACTAAAGAAATCAAAATTCAAAGAAATGAGTTTAGAACTCAATTAAAAAACGATGAAGTGAAAAGAGAGATGGATATAAGCATCAATATTAGTATTAAAGCAAATTCCATTGTCGGCATTTACAAATATATATATATATATACTCACAAACAAATCTCTCTTCCAACATCAACAAATTCAAAGAAACAACAAAAGAGAACTGAAGATTTTTTTTTTCTTTTTGGGAGAAGGAATTAATTATTTTCATGTGGGGGGAAAATTAAATTATGGTACAACCAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAAAAAAAATGTTGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGGGGAAAATTAAATTATGGTACAAAAAAAAAAAAAAAAAAAGAAAAAAATTAAAAAAAAAATGTTGTGGCTGTTGGAAAGAATCTACTGGATAAAGAGGAAGGTCAAAGCTAACAACCATGGAAGTAGTCTGCCAATAACTACAAGGGATTCTGCAGAAGACAGTTTGTGAGCTCCCACTGTGTAAACTTCTCCTGATTTTACATCTTTCAATTTTATGCCTGAAGAGCCTGTTGGTCCATCAATGCATATGTAACATATGGTCAAATTCTAACATTTCCTTCTATTCTTATAATTTTTTAACTTCATTTAATTCGATTAAACTGATTAAACAATAATATGCTTCAAATATAAAAGTCGAACATAAGCTTAGTCATTAAAACACATATTCTTTCCTTAGAGTTCGGAGGTATAAGTACCATCGTCTCTCAATTTATTGTACTATATATAAATAAAAGGAACAAGCCGATACAATTTTCTAAATTGAAAACTTAAAAATGGATTGAGTATCTTAAATAAGGTATGTATATATTTAATAGATCTAAGGTTCATTTTCATCTCTAATACTTGTGATATTAGATACCCATATATGGAAAAAGAAAAAAAAAAACTCCATGATTTTTTTTAGAATATATTTGAAGTAGAGAGATTGACAACTTTTTTTTTTTCTTTTTGATATCCGTAAGTGTCCGGGGCCAGTTTACGCGCACCTCGACTAATCTCATGGGACAACCCGACCCTACAACATTTAGGTGTCAAAGAAACTCGTAGGAAATTAATTCTTAAGTAGGTAGCCACCATGGATTAAATCCATAACTTCTTAGCCAATTATTGAGACTTTGTCTCATTTTTTACCACTAGGCCAACCCATGATGGTTGAGATTGACAACTTTTGTGTGATGAAGTTTCCTAGACAAAAACTACATGACATAAAAGTTGATGACTTATAATTATGAAAAATGTAATATATAAAGAAAAGGAAAAAAAAATGAAAAAAAAGAAATAATGGTGTTTGTGAGGAGGGGTAATCCAAACATACATGTTTAACGATGCAACTCAATCCAACTATACAATATTTGGTTTAGTAATCTTAAAATTGCAAGAATAGATATTTTAATACTCGAACTAGAAGTAAATATTTTCTTCGAAACGGTTTAGGTAATTCATAGAGTTCTTTCAAGTAATTTATTTTAACTCCACGAGAAAATGATTGAATAAAAACAATAAAGGAGATAAATTTTTAAGGTAGAAAGAAACTCACAATTGTACTCAGTCCAACCAAGGGTCTGATCTTCAAGATTATAGTAAACCAACTTGTTTTGAAGAACCAAGTCTGCAATTCAAAACCCATGAAAAGGAAAACAAGCTAAGAATCTACTAAAATATGCATCATAATAATCATGTGGTCGGTTTTAAAATTTTTGTTTAAAAATTTAGGGTCTGTTTGGTAGGCAACTCAGATTCTGTTTTATGTATTCAGATTAACCGAGTTAAGCGAATATGCATTTAGTAGACAATCTGGATTTCATTTTAAAAAATTGTTTTCGGATTCTATGATCCAAACAGTGGAAATTTTGAAAACTACATTTTTGTGTTTTTAGTGTATCCAAATTTTGAATTTAATATTTTAAAATGCAAAATTATACCCAAAAAGAAAAAAACAACCGATATCGTATTTCATGTTATAAACTCAATAACTTTTGTTAAATTAAAATATGTAACATATTATATATCATATGATATTATAAAATAATAGATATACAAATTTTATAAAATAAAACAAGTTCATAAATTAATTAGTTATAGTTTATATTTAACTTAATATTTAGTAGATTAACTATAATTAGTCTTATGGTTTATAAATATATATTATCAAACACATTTTGAAAAATTGTTTAAATTGGAACTTAAATTCTAAATCTGCTACCAAACACATATCTGAAAACATGAAATACACCTCTATTTTCATTGAATCCCTTGTTTGCAAATTTATGTTTTCAGATTGCCTACCAAACAGACCCTTAGATTTCAAAAGTTTTTTTTTCTTGGTTAAAGTACTATTCAAGTCCTTGTACATCAAATTTTGTTCAATTTTAGGTCTTTGTACTTTCAAGAAGTCTTAAATTTAATCCCTAAATAATTTTCATATGAAAATGCTAATAGATAATAAAAAGTTAGTAAAAAAACTCAACAATAAACTAGTAGTAAGAATTAAATTTAAAATTTATTAAAAGTACATGGACTAAAATAATATTTTAACGTAAAAATTATAGATTATAAAATAATATAAGACCTTGATGATAATGAAAAAAAGAAGATACCTCCCAAGAGAGTGATTTCATGTCCATCTTTGGATTGAGCTCCACTATTCTGCCACCCAACACACCATACATCATCCTGCATACCCCAAAACACCTTCTTAACTTATAACTCTTATGTTTTTAGATTGAATCATCAATGAAATTTGTTTCTTACCAAAAAAAAAAAAAAAAAGATTTTATGTTTTTATTAGTTTATTGAAATATATTTAAGTTATTGTGGTTGATTTTTCATTGATTATTTAATGAAAATTGAATGTGTATGATAATTTAAGTCCCATTTGATAACGATTTTGTTTTTGAAATTTATCTTATTTTATATTATGGTTTTCATATTTCTTAAAGAAACAATTGAATTCTTAGTTAAATTTTAAAAAACAAAAACAAGCGTTTGTTTTTTTTTTCTCTTTTGAGACAACCCACCCGACCCTACAACATTTAGGTGTCAAGGAAACCCGTAGGAAGAATACTAAATCCTAGTTAGGTGACCACCATGGATTGAACCCATGATCTTTTTTTTTTTTTTTTTATAATTTTTTTTTAATGTTTCCACTACCAATAGGCCAACCCATGATGGTTAACAAAAACAACTGTTTGAAAACTAGATCTTTTAGTTTTCAAAATTTGGCTTAGTTTCTGAAAATATTGATAGAAAATGGATAACAAACCAAAGAAACTTATAGGTGGAAGTAGTTTTTATAAGCATAATTTTTAAAATTGAATAACGAAAAAATAAATCATTATCATGTTTTTGTTAAATTATCTTAAAAAGAAAAAGCAATGTCAAAGATTAAGATGATCTTTTAGGCAAAGTTCATGAACAAAACAAAAATATTTGGAAGCTTGAGAACCAAACTAGGACGGGCAAAAAAGTTTATAGATTAAAATAAGATTTAAACGGTTTTCAAATCTACTTTTTGAAAACTCTTTTGAAACTTGGCCCTTTTAAAAAGTAAAGAAAAATAGTTTTGTAAGTTGTTTTCATTTTAAAAAATTAAACAAGTTTAGAATAAAAAAACAGACTTAAAAATTGAATTGTTTCTATAAATATTTTACTATGGGAGGGATGCATGGAACTAGGTGTAGCAATCATTGTCCAAAATAGATTACTTACCCGAATTTGAAAGAGATACTCGTGAGGGTAAACAGTCAAGACCAAGGACTCCTCAAATTCGAATGTCACGGTTGGAAATCCGTCATCCACACTGAAATAGTACGAAACAAAACAGAAAAGTGACCAAAGCTTCTTTAGCACAGTCAAATAGTATCAAGAATGACAACATTTTCACTTCAACAGATTGAATGGAAGTCCCCATATATAACACTTGGTCCTTAAAGCATACACGTCGAATTTCGTCCCCTAATCTTTCAAAAAATTTCGATCAAATACAGCGATAAAATTGAAGAATGAATAGTGATATGACATTCAAACTTTTCTTGATTAAATATGGTCTCTTCATATGTCCTGTTCTAAAAAGTTTTCAAACCTCTAAATGATGTAATGAAAATCACCACCCTCTTTTCCTCTTAGTAATTGGGTTGTATGAGTAGAAGGATCAGGTGGGTTTTCAATCCAAGAAAGACTGAAAACATCCGAAACACAATATTTTCCATACATCAGGTCACTATTTTGCTATTAAGTTTCTTCTCAGCACAATCATTGAATGATATTTAAACATCAACAAAATCAAAAATGGCCAAGAATAATGTATTCAAAGATCAAATGATATGTCTAGCAGTAAAAATACTGAACAATAAGGATAAGAGTAAGCATCTTACTTTCCATCAAACAGAAAACAAGTAAACTGCTCATCAACTGTACGTAGTTTCAGATCAGGCTGGGCAACCAAGATCTACAACATAAGTTATATATTTTCTTTTCAGGAAAATGAAATTTAGAATTTAGTTGCAAAAAAAGCTTAAATAAAGTCGGTTACTTGATACCTTCCCCATTATTGGCAGGTAAATGCTCTCAGGAAGATAAGCTAGTGTTGTGCCACTGTCAATGATTGCTCCTCTTTTATACGAAGTTTCAAATATTCCAACAGGAAGATCAAGAGCAATGCCCCCTACCTTAACTCCATTTAGAACAATATTGTAGTGAGCCCTGAAATTTGTAGATGGAAGAGGGAAAACAAGGTAAAATGTAAAAAGCTTCCTTGTGATAAATAGAAGACTGCTAAATTATTGTATACAAGAGCAAACTTTGGAGAGTGGGAAAAAACGAACTTTGTTCAATTATAAACTTGGAACGTCAAGTTGGTAGTTGTACCTATTTAGTTTAGTCCTTCAACTTTAAAAGTGTAAGTACGGAAGCATGTGATAAACTTTGTAAGACCTTCAAAAGTTTAAGCCAGTTTC

mRNA sequence

ATGACGGCCGCCACCGCAATCATCCGCCGCAAGACCCGCCTTGGCGCCGCCACACCTCTCGTCGTTCCTCCTCCTCACTGTCGCCATGTTCTTCCCCTCAGAGGCCTGCAATTTTTCTCCACACTCTTTCTTTTTAATCGCGATTTCTCAATGTCTCTGATAGCTGCCGCAAACGATTCGAACAGCACCGAGCAATTGACGGTGGAATCCGCCGTCGAAAGATCGGAGGCTGATAAGATCGTAGACGGCATGGATTTCGGTGAGCTCTGCAACGAATTTGAGTGCATCAGTAGCCCCTTGGTTGAATCTACTGCCAGGCAACTTGCTAGAGACATTCTTCAACTTCGCCAAGGCGATCGGTCTCTTGGAAAATTTGCCGTCTTTGTCAAGTATAAGGATCCGATTAGGAAATTCAGGGGTCGGGAAAAGTACAAAAGACAACTCTGGGCGACCATTGCGCTTGAGAATCCAACTACGTGGACGATCAAAGGGAAACCTAAATCCTTGGTTTCAGCCATAGGAGATCTCATTATCAAAGTTGATTCACAGTTCACTCTCAACCAAATCAGTGGCCAAGTTATCGAACACGAAGAGCGTTGGGACGTATCGAGTTCTTCTGCCATTTCCCAAGCTTTCTTTTGGGCCTCGCGCTATCTCTTTGCCTCCGCCGAGGCGGGAAAGGACTTTGCTGATTCTGTCAGCAGCCTCACCGGCCGAGTCTCTACTGAGAAACAGAACTTGGAAATGTTTCCTGACCCTTCCGGTGATCCTACCAAGTTCTTTCAAGGTGAGGACAACTTCCAAAGAGATGCATACCAATTTGCTCTGCTGCTGGCTATCCTCTATTTTGTTGTACAGTTTTTGAGGGCCACACTGTAAATGCAACGAAACTAAGGTAAATGCTCTCAGGAAGATAAGCTAGTGTTGTGCCACTGTCAATGATTGCTCCTCTTTTATACGAAGTTTCAAATATTCCAACAGGAAGATCAAGAGCAATGCCCCCTACCTTAACTCCATTTAGAACAATATTGTAGTGAGCCCTGAAATTTGTAGATGGAAGAGGGAAAACAAGGTAAAATGTAAAAAGCTTCCTTGTGATAAATAGAAGACTGCTAAATTATTGTATACAAGAGCAAACTTTGGAGAGTGGGAAAAAACGAACTTTGTTCAATTATAAACTTGGAACGTCAAGTTGGTAGTTGTACCTATTTAGTTTAGTCCTTCAACTTTAAAAGTGTAAGTACGGAAGCATGTGATAAACTTTGTAAGACCTTCAAAAGTTTAAGCCAGTTTC

Coding sequence (CDS)

ATGACGGCCGCCACCGCAATCATCCGCCGCAAGACCCGCCTTGGCGCCGCCACACCTCTCGTCGTTCCTCCTCCTCACTGTCGCCATGTTCTTCCCCTCAGAGGCCTGCAATTTTTCTCCACACTCTTTCTTTTTAATCGCGATTTCTCAATGTCTCTGATAGCTGCCGCAAACGATTCGAACAGCACCGAGCAATTGACGGTGGAATCCGCCGTCGAAAGATCGGAGGCTGATAAGATCGTAGACGGCATGGATTTCGGTGAGCTCTGCAACGAATTTGAGTGCATCAGTAGCCCCTTGGTTGAATCTACTGCCAGGCAACTTGCTAGAGACATTCTTCAACTTCGCCAAGGCGATCGGTCTCTTGGAAAATTTGCCGTCTTTGTCAAGTATAAGGATCCGATTAGGAAATTCAGGGGTCGGGAAAAGTACAAAAGACAACTCTGGGCGACCATTGCGCTTGAGAATCCAACTACGTGGACGATCAAAGGGAAACCTAAATCCTTGGTTTCAGCCATAGGAGATCTCATTATCAAAGTTGATTCACAGTTCACTCTCAACCAAATCAGTGGCCAAGTTATCGAACACGAAGAGCGTTGGGACGTATCGAGTTCTTCTGCCATTTCCCAAGCTTTCTTTTGGGCCTCGCGCTATCTCTTTGCCTCCGCCGAGGCGGGAAAGGACTTTGCTGATTCTGTCAGCAGCCTCACCGGCCGAGTCTCTACTGAGAAACAGAACTTGGAAATGTTTCCTGACCCTTCCGGTGATCCTACCAAGTTCTTTCAAGGTGAGGACAACTTCCAAAGAGATGCATACCAATTTGCTCTGCTGCTGGCTATCCTCTATTTTGTTGTACAGTTTTTGAGGGCCACACTGTAA

Protein sequence

MTAATAIIRRKTRLGAATPLVVPPPHCRHVLPLRGLQFFSTLFLFNRDFSMSLIAAANDSNSTEQLTVESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDILQLRQGDRSLGKFAVFVKYKDPIRKFRGREKYKRQLWATIALENPTTWTIKGKPKSLVSAIGDLIIKVDSQFTLNQISGQVIEHEERWDVSSSSAISQAFFWASRYLFASAEAGKDFADSVSSLTGRVSTEKQNLEMFPDPSGDPTKFFQGEDNFQRDAYQFALLLAILYFVVQFLRATL

Homology

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BLAST of Lsi06G006580.1 vs. TrEMBL
Match: A0A0A0LXP7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651640 PE=4 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.4e-99
Identity = 207/271 (76.38%), Postives = 211/271 (77.86%), Query Frame = 1


Query: 9   RRKTRLGAATPLVVPPPHCRHVLPLRGLQFFSTLFLFNRD---FSMSLIAAANDSNSTEQ 68
           RR    G    L    P  RH    R    FS    F       S+  + AANDSNSTEQ
Sbjct: 15  RRSISSGRLHDLPPQDPPWRHHTSRRYSSSFSIPPCFPSQRPAISLHTLPAANDSNSTEQ 74

Query: 69  LTVESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDILQLRQGDRSLGKF 128
           LT ESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDILQLRQGDRSLG F
Sbjct: 75  LTAESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDILQLRQGDRSLGNF 134

Query: 129 AVFVKYKDPIRKFRGREKYKRQLWATIALENPTT----------------WTIKGKPKSL 188
           AVFVKYKDPIRKF GREKYKRQLWAT AL+NPTT                WTIKGKPKSL
Sbjct: 135 AVFVKYKDPIRKFTGREKYKRQLWATSALDNPTTSVQEMVMMSTSILKIKWTIKGKPKSL 194

Query: 189 VSAI-GDLIIKVDSQFTLNQISGQVIEHEERWDVSSSSAISQAFFWASRYLFASAEAGKD 248
           V+AI GDLIIKVDSQFTLNQISGQVIEHEE WDVSSSSAISQAFFWASRYLFASAEAGKD
Sbjct: 195 VAAIGGDLIIKVDSQFTLNQISGQVIEHEESWDVSSSSAISQAFFWASRYLFASAEAGKD 254

Query: 249 FADSVSSLTGRVSTEKQNLEMFPDPSGDPTK 260
             DSVSSLTGRVSTEKQNLEMFPDPSGDPTK
Sbjct: 255 LGDSVSSLTGRVSTEKQNLEMFPDPSGDPTK 285

[Close]

BLAST of Lsi06G006580.1 vs. TrEMBL
Match: A5B3D0_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020863 PE=4 SV=1)

HSP 1 Score: 344.4 bits (882), Expect = 1.4e-91
Identity = 182/258 (70.54%), Postives = 213/258 (82.56%), Query Frame = 1


Query: 53  LIAAANDSNS-TEQLTVESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARD 112
           LI   NDSN  T ++++ES  ERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARD
Sbjct: 43  LIFFTNDSNRRTAEVSIES--ERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARD 102

Query: 113 ILQLRQGDRSLGKFAVFVKYKDPIRKFRGREKYKRQLWATIALENPTT------------ 172
           IL+LR+G+R+LG FAV VKYKDP+R F GREKYKR+LW T AL++P+             
Sbjct: 103 ILELREGNRALGTFAVSVKYKDPVRSFTGREKYKRRLWVTDALDDPSVTVQEMVMLSTSV 162

Query: 173 ----WTIKGKPKSLVSAI-GDLIIKVDSQFTLNQISGQVIEHEERWDVSSSSAISQAFFW 232
               WTIKGKPKSL+++I GDLII+V+SQFTLNQISGQVIEHEE WD+S+SSAI+QA+FW
Sbjct: 163 LSIKWTIKGKPKSLLASIGGDLIIRVNSQFTLNQISGQVIEHEEFWDLSASSAIAQAYFW 222

Query: 233 ASRYLFASAEAGKDFADSVSSLTGRVSTEKQNLEMFPDPSGDPTKFFQGEDNFQRDAYQF 292
           ASR LFA+ EAGKDFADSV +   R+STE +NLE++PDPSGDPTKFFQ +D+FQRD YQ 
Sbjct: 223 ASRRLFAATEAGKDFADSVKNWGSRLSTEXENLEIYPDPSGDPTKFFQRDDSFQRDFYQI 282

[Close]

BLAST of Lsi06G006580.1 vs. TrEMBL
Match: F6GX17_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00720 PE=4 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.8e-91
Identity = 180/257 (70.04%), Postives = 212/257 (82.49%), Query Frame = 1


Query: 54  IAAANDSNS-TEQLTVESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDI 113
           +   ND N  T ++++ES  ERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDI
Sbjct: 47  LKVTNDPNRRTAEVSIES--ERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDI 106

Query: 114 LQLRQGDRSLGKFAVFVKYKDPIRKFRGREKYKRQLWATIALENPTT------------- 173
           L+LR+G+R+LG FAV VKYKDP+R F GREKYKR+LW T AL++P+              
Sbjct: 107 LELREGNRALGTFAVSVKYKDPVRSFTGREKYKRRLWVTDALDDPSVTVQEMVMLSTSVL 166

Query: 174 ---WTIKGKPKSLVSAI-GDLIIKVDSQFTLNQISGQVIEHEERWDVSSSSAISQAFFWA 233
              WTIKGKPKSL+++I GDLII+V+SQFTLNQISGQVIEHEE WD+S+SSAI+QA+FWA
Sbjct: 167 SIKWTIKGKPKSLLASIGGDLIIRVNSQFTLNQISGQVIEHEEFWDLSASSAIAQAYFWA 226

Query: 234 SRYLFASAEAGKDFADSVSSLTGRVSTEKQNLEMFPDPSGDPTKFFQGEDNFQRDAYQFA 293
           SR LFA+ EAGKDFADSV +   R+STEK+NLE++PDPSGDPTKFFQ +D+FQRD YQ A
Sbjct: 227 SRRLFAATEAGKDFADSVKNWGSRLSTEKENLEIYPDPSGDPTKFFQRDDSFQRDFYQIA 286

[Close]

BLAST of Lsi06G006580.1 vs. TrEMBL
Match: B9RM63_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1077930 PE=4 SV=1)

HSP 1 Score: 338.2 bits (866), Expect = 1.0e-89
Identity = 178/257 (69.26%), Postives = 205/257 (79.77%), Query Frame = 1


Query: 53  LIAAANDSNSTEQLTVESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDI 112
           L+   NDSN TE L+ + AV RSEADKIVDGMDFGELCNEFECISSPLVE+TARQLARDI
Sbjct: 57  LLRVTNDSNRTE-LSSDVAVGRSEADKIVDGMDFGELCNEFECISSPLVEATARQLARDI 116

Query: 113 LQLRQGDRSLGKFAVFVKYKDPIRKFRGREKYKRQLWATIALENPTT------------- 172
           L+LR+G+R+LG FAV V+YKDP+R F GREKYKR LW T AL+NP+              
Sbjct: 117 LELREGNRALGTFAVSVRYKDPVRSFTGREKYKRPLWVTGALDNPSVAVQEMVMLSTSVL 176

Query: 173 ---WTIKGKPKS-LVSAIGDLIIKVDSQFTLNQISGQVIEHEERWDVSSSSAISQAFFWA 232
              WTIKGKPKS L SA G+LIIKV+SQFTLNQISGQVIEHEE WD+S+SS I+QAFFW 
Sbjct: 177 SIKWTIKGKPKSFLASAGGELIIKVNSQFTLNQISGQVIEHEEVWDLSASSPIAQAFFWT 236

Query: 233 SRYLFASAEAGKDFADSVSSLTGRVSTEKQNLEMFPDPSGDPTKFFQGEDNFQRDAYQFA 292
           SR LFA+ E GKD +D V +LT R+  E++NLE+FPDPSGDPTKFFQ +D FQRDAYQ A
Sbjct: 237 SRRLFATLETGKDLSDFVKNLTTRLPAERENLEIFPDPSGDPTKFFQRDDGFQRDAYQIA 296

[Close]

BLAST of Lsi06G006580.1 vs. TrEMBL
Match: A0A0D2PIT6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_004G263500 PE=4 SV=1)

HSP 1 Score: 331.3 bits (848), Expect = 1.2e-87
Identity = 176/277 (63.54%), Postives = 205/277 (74.01%), Query Frame = 1


Query: 36  LQFFSTLFLFNRDFSMS---LIAAANDSNSTEQLTVESAVERSEADKIVDGMDFGELCNE 95
           L+   TLF F+         L+   N+++ TE  T +   ER E+DKIVDGMDFGELCNE
Sbjct: 26  LRIPKTLFTFHHPHHHHHPFLLRVTNETSRTEVSTTDPTNERLESDKIVDGMDFGELCNE 85

Query: 96  FECISSPLVESTARQLARDILQLRQGDRSLGKFAVFVKYKDPIRKFRGREKYKRQLWATI 155
           FECISSPLVESTARQL RDIL+LR+G+R+LG +AV VKYKDP+R F GREKYKR LW T 
Sbjct: 86  FECISSPLVESTARQLVRDILELREGNRALGTYAVSVKYKDPVRSFTGREKYKRPLWITG 145

Query: 156 ALENPTT----------------WTIKGKPKSLVSAI-GDLIIKVDSQFTLNQISGQVIE 215
           ALENPT                 WTI+GKPKS V+ I GDLII+V+SQFTLNQISGQVIE
Sbjct: 146 ALENPTVRVQEMVMLSTSVLNIKWTIQGKPKSFVAGIGGDLIIRVNSQFTLNQISGQVIE 205

Query: 216 HEERWDVSSSSAISQAFFWASRYLFASAEAGKDFADSVSSLTGRVSTEKQNLEMFPDPSG 275
           HEE WD+SSSS I+QAFFW SR LFA+ EA KD AD    L+ R ST+++N E++PDPSG
Sbjct: 206 HEELWDLSSSSIIAQAFFWTSRRLFATVEAAKDLADGAKDLSTRFSTKQENTEVYPDPSG 265

Query: 276 DPTKFFQGEDNFQRDAYQFALLLAILYFVVQFLRATL 293
           DPTKFFQ +D FQRD YQ AL LA+LYFVVQFLR TL
Sbjct: 266 DPTKFFQRDDGFQRDVYQIALFLAVLYFVVQFLRTTL 302

[Close]

BLAST of Lsi06G006580.1 vs. TAIR10
Match: AT1G65230.1 (AT1G65230.1 Uncharacterized conserved protein (DUF2358))

HSP 1 Score: 283.9 bits (725), Expect = 1.1e-76
Identity = 144/252 (57.14%), Postives = 187/252 (74.21%), Query Frame = 1


Query: 58  NDSNSTEQLTVESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDILQLRQ 117
           NDS  TE      ++++SE DK+VD +DFGELCN+FEC SSP VESTARQL RDIL++R+
Sbjct: 41  NDSTRTEV-----SIDKSEVDKLVDKIDFGELCNDFECTSSPQVESTARQLVRDILEIRE 100

Query: 118 GDRSLGKFAVFVKYKDPIRKFRGREKYKRQLWATIALENPTT----------------WT 177
           G+R+   +AV VKYKDP+R F GREKYKR +W T  LENPT                 WT
Sbjct: 101 GNRAFACYAVSVKYKDPVRSFTGREKYKRPMWITSGLENPTVTVQEMVMLSTSVLRIKWT 160

Query: 178 IKGKPKSLVSAI-GDLIIKVDSQFTLNQISGQVIEHEERWDVSSSSAISQAFFWASRYLF 237
           +KGKPKS+++A+ GDLI+KV S+FTLNQISGQV EHEE WD+SSSS I+QA+FW SR LF
Sbjct: 161 VKGKPKSILAAVSGDLIVKVKSEFTLNQISGQVFEHEESWDLSSSSPIAQAYFWTSRRLF 220

Query: 238 ASAEAGKDFADSVSSLTGRVSTEKQNLEMFPDPSGDPTKFFQGEDNFQRDAYQFALLLAI 293
           A++E+ KD AD    LT  ++T K++ +++ DP+ DP KFFQ +++F+RD YQ AL LAI
Sbjct: 221 AASESAKDVADVTKDLTANLTTRKEDTDIYRDPT-DPNKFFQRDNSFERDVYQIALFLAI 280

[Close]

BLAST of Lsi06G006580.1 vs. NCBI nr
Match: gi|659085861|ref|XP_008443648.1| (PREDICTED: uncharacterized protein LOC103487195 [Cucumis melo])

HSP 1 Score: 455.3 bits (1170), Expect = 8.1e-125
Identity = 246/306 (80.39%), Postives = 253/306 (82.68%), Query Frame = 1


Query: 4   ATAIIRRKTRLGAATPLVVPPPHCRHVLPLRGLQFFSTLFLFNRDFSMSLIAAANDSNST 63
           A+ I RR+   GA+ PL VPPP  RH  PLR                    AAANDSNST
Sbjct: 18  ASTIFRRRILRGASAPLAVPPPQSRHAFPLR--------------------AAANDSNST 77

Query: 64  EQLTVESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDILQLRQGDRSLG 123
           EQLT ESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDILQLRQGDRSLG
Sbjct: 78  EQLTAESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDILQLRQGDRSLG 137

Query: 124 KFAVFVKYKDPIRKFRGREKYKRQLWATIALENPTT----------------WTIKGKPK 183
            FAVFVKYKDPIRKF GREKYKRQLWAT AL+NPTT                WTI+GKPK
Sbjct: 138 NFAVFVKYKDPIRKFTGREKYKRQLWATSALDNPTTSVQEMVMMSTSVLNIKWTIRGKPK 197

Query: 184 SLVSAI-GDLIIKVDSQFTLNQISGQVIEHEERWDVSSSSAISQAFFWASRYLFASAEAG 243
           SLV+AI GDLIIKVDSQFTLNQISGQVIEHEERWDVSSSSAISQAFFWASRYLFASAEAG
Sbjct: 198 SLVAAIGGDLIIKVDSQFTLNQISGQVIEHEERWDVSSSSAISQAFFWASRYLFASAEAG 257

Query: 244 KDFADSVSSLTGRVSTEKQNLEMFPDPSGDPTKFFQGEDNFQRDAYQFALLLAILYFVVQ 293
           KD ADSVSSLTGRVSTEKQNLEMFPDPSGDPTKFFQGEDNFQ+DAYQFALLLAILYFVVQ
Sbjct: 258 KDLADSVSSLTGRVSTEKQNLEMFPDPSGDPTKFFQGEDNFQKDAYQFALLLAILYFVVQ 303

[Close]

BLAST of Lsi06G006580.1 vs. NCBI nr
Match: gi|449442645|ref|XP_004139091.1| (PREDICTED: uncharacterized protein LOC101206988 [Cucumis sativus])

HSP 1 Score: 447.6 bits (1150), Expect = 1.7e-122
Identity = 246/309 (79.61%), Postives = 251/309 (81.23%), Query Frame = 1


Query: 3   AATAIIRRKTRLGAATPLVVPPP--HCRHVLPLRGLQFFSTLFLFNRDFSMSLIAAANDS 62
           AA+ I RRK   GA TPL V PP    RH  PLR                    AAANDS
Sbjct: 17  AASTIFRRKILRGATTPLAVTPPPSQSRHAFPLR--------------------AAANDS 76

Query: 63  NSTEQLTVESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDILQLRQGDR 122
           NSTEQLT ESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDILQLRQGDR
Sbjct: 77  NSTEQLTAESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDILQLRQGDR 136

Query: 123 SLGKFAVFVKYKDPIRKFRGREKYKRQLWATIALENPTT----------------WTIKG 182
           SLG FAVFVKYKDPIRKF GREKYKRQLWAT AL+NPTT                WTIKG
Sbjct: 137 SLGNFAVFVKYKDPIRKFTGREKYKRQLWATSALDNPTTSVQEMVMMSTSILKIKWTIKG 196

Query: 183 KPKSLVSAI-GDLIIKVDSQFTLNQISGQVIEHEERWDVSSSSAISQAFFWASRYLFASA 242
           KPKSLV+AI GDLIIKVDSQFTLNQISGQVIEHEE WDVSSSSAISQAFFWASRYLFASA
Sbjct: 197 KPKSLVAAIGGDLIIKVDSQFTLNQISGQVIEHEESWDVSSSSAISQAFFWASRYLFASA 256

Query: 243 EAGKDFADSVSSLTGRVSTEKQNLEMFPDPSGDPTKFFQGEDNFQRDAYQFALLLAILYF 293
           EAGKD  DSVSSLTGRVSTEKQNLEMFPDPSGDPTKFFQGEDNFQ+DAYQFALLLAI+YF
Sbjct: 257 EAGKDLGDSVSSLTGRVSTEKQNLEMFPDPSGDPTKFFQGEDNFQKDAYQFALLLAIIYF 305

[Close]

BLAST of Lsi06G006580.1 vs. NCBI nr
Match: gi|700211534|gb|KGN66630.1| (hypothetical protein Csa_1G651640 [Cucumis sativus])

HSP 1 Score: 370.9 bits (951), Expect = 2.0e-99
Identity = 207/271 (76.38%), Postives = 211/271 (77.86%), Query Frame = 1


Query: 9   RRKTRLGAATPLVVPPPHCRHVLPLRGLQFFSTLFLFNRD---FSMSLIAAANDSNSTEQ 68
           RR    G    L    P  RH    R    FS    F       S+  + AANDSNSTEQ
Sbjct: 15  RRSISSGRLHDLPPQDPPWRHHTSRRYSSSFSIPPCFPSQRPAISLHTLPAANDSNSTEQ 74

Query: 69  LTVESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDILQLRQGDRSLGKF 128
           LT ESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDILQLRQGDRSLG F
Sbjct: 75  LTAESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDILQLRQGDRSLGNF 134

Query: 129 AVFVKYKDPIRKFRGREKYKRQLWATIALENPTT----------------WTIKGKPKSL 188
           AVFVKYKDPIRKF GREKYKRQLWAT AL+NPTT                WTIKGKPKSL
Sbjct: 135 AVFVKYKDPIRKFTGREKYKRQLWATSALDNPTTSVQEMVMMSTSILKIKWTIKGKPKSL 194

Query: 189 VSAI-GDLIIKVDSQFTLNQISGQVIEHEERWDVSSSSAISQAFFWASRYLFASAEAGKD 248
           V+AI GDLIIKVDSQFTLNQISGQVIEHEE WDVSSSSAISQAFFWASRYLFASAEAGKD
Sbjct: 195 VAAIGGDLIIKVDSQFTLNQISGQVIEHEESWDVSSSSAISQAFFWASRYLFASAEAGKD 254

Query: 249 FADSVSSLTGRVSTEKQNLEMFPDPSGDPTK 260
             DSVSSLTGRVSTEKQNLEMFPDPSGDPTK
Sbjct: 255 LGDSVSSLTGRVSTEKQNLEMFPDPSGDPTK 285

[Close]

BLAST of Lsi06G006580.1 vs. NCBI nr
Match: gi|147819671|emb|CAN76393.1| (hypothetical protein VITISV_020863 [Vitis vinifera])

HSP 1 Score: 344.4 bits (882), Expect = 2.0e-91
Identity = 182/258 (70.54%), Postives = 213/258 (82.56%), Query Frame = 1


Query: 53  LIAAANDSNS-TEQLTVESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARD 112
           LI   NDSN  T ++++ES  ERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARD
Sbjct: 43  LIFFTNDSNRRTAEVSIES--ERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARD 102

Query: 113 ILQLRQGDRSLGKFAVFVKYKDPIRKFRGREKYKRQLWATIALENPTT------------ 172
           IL+LR+G+R+LG FAV VKYKDP+R F GREKYKR+LW T AL++P+             
Sbjct: 103 ILELREGNRALGTFAVSVKYKDPVRSFTGREKYKRRLWVTDALDDPSVTVQEMVMLSTSV 162

Query: 173 ----WTIKGKPKSLVSAI-GDLIIKVDSQFTLNQISGQVIEHEERWDVSSSSAISQAFFW 232
               WTIKGKPKSL+++I GDLII+V+SQFTLNQISGQVIEHEE WD+S+SSAI+QA+FW
Sbjct: 163 LSIKWTIKGKPKSLLASIGGDLIIRVNSQFTLNQISGQVIEHEEFWDLSASSAIAQAYFW 222

Query: 233 ASRYLFASAEAGKDFADSVSSLTGRVSTEKQNLEMFPDPSGDPTKFFQGEDNFQRDAYQF 292
           ASR LFA+ EAGKDFADSV +   R+STE +NLE++PDPSGDPTKFFQ +D+FQRD YQ 
Sbjct: 223 ASRRLFAATEAGKDFADSVKNWGSRLSTEXENLEIYPDPSGDPTKFFQRDDSFQRDFYQI 282

[Close]

BLAST of Lsi06G006580.1 vs. NCBI nr
Match: gi|297735250|emb|CBI17612.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 344.0 bits (881), Expect = 2.6e-91
Identity = 180/257 (70.04%), Postives = 212/257 (82.49%), Query Frame = 1


Query: 54  IAAANDSNS-TEQLTVESAVERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDI 113
           +   ND N  T ++++ES  ERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDI
Sbjct: 92  LKVTNDPNRRTAEVSIES--ERSEADKIVDGMDFGELCNEFECISSPLVESTARQLARDI 151

Query: 114 LQLRQGDRSLGKFAVFVKYKDPIRKFRGREKYKRQLWATIALENPTT------------- 173
           L+LR+G+R+LG FAV VKYKDP+R F GREKYKR+LW T AL++P+              
Sbjct: 152 LELREGNRALGTFAVSVKYKDPVRSFTGREKYKRRLWVTDALDDPSVTVQEMVMLSTSVL 211

Query: 174 ---WTIKGKPKSLVSAI-GDLIIKVDSQFTLNQISGQVIEHEERWDVSSSSAISQAFFWA 233
              WTIKGKPKSL+++I GDLII+V+SQFTLNQISGQVIEHEE WD+S+SSAI+QA+FWA
Sbjct: 212 SIKWTIKGKPKSLLASIGGDLIIRVNSQFTLNQISGQVIEHEEFWDLSASSAIAQAYFWA 271

Query: 234 SRYLFASAEAGKDFADSVSSLTGRVSTEKQNLEMFPDPSGDPTKFFQGEDNFQRDAYQFA 293
           SR LFA+ EAGKDFADSV +   R+STEK+NLE++PDPSGDPTKFFQ +D+FQRD YQ A
Sbjct: 272 SRRLFAATEAGKDFADSVKNWGSRLSTEKENLEIYPDPSGDPTKFFQRDDSFQRDFYQIA 331

The following BLAST results are available for this feature:

BLAST of Lsi06G006580.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi06G006580.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXP7_CUCSA	1.4e-99	76.38	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G651640 PE=4 SV=1	[more]
A5B3D0_VITVI	1.4e-91	70.54	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_020863 PE=4 SV=1	[more]
F6GX17_VITVI	1.8e-91	70.04	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0023g00720 PE=4 SV=...	[more]
B9RM63_RICCO	1.0e-89	69.26	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1077930 PE=4 SV=1	[more]
A0A0D2PIT6_GOSRA	1.2e-87	63.54	Uncharacterized protein OS=Gossypium raimondii GN=B456_004G263500 PE=4 SV=1	[more]

BLAST of Lsi06G006580.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G65230.1	1.1e-76	57.14	Uncharacterized conserved protein (DUF2358)	[more]

BLAST of Lsi06G006580.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659085861\|ref\|XP_008443648.1\|	8.1e-125	80.39	PREDICTED: uncharacterized protein LOC103487195 [Cucumis melo]	[more]
gi\|449442645\|ref\|XP_004139091.1\|	1.7e-122	79.61	PREDICTED: uncharacterized protein LOC101206988 [Cucumis sativus]	[more]
gi\|700211534\|gb\|KGN66630.1\|	2.0e-99	76.38	hypothetical protein Csa_1G651640 [Cucumis sativus]	[more]
gi\|147819671\|emb\|CAN76393.1\|	2.0e-91	70.54	hypothetical protein VITISV_020863 [Vitis vinifera]	[more]
gi\|297735250\|emb\|CBI17612.3\|	2.6e-91	70.04	unnamed protein product [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi06G006580	Lsi06G006580	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi06G006580.1	Lsi06G006580.1-protein	polypeptide

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G006580.1.three_prime_UTR.2	Lsi06G006580.1.three_prime_UTR.2	three_prime_UTR
Lsi06G006580.1.three_prime_UTR.1	Lsi06G006580.1.three_prime_UTR.1	three_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi06G006580.1.CDS.6	Lsi06G006580.1.CDS.6	CDS
Lsi06G006580.1.CDS.5	Lsi06G006580.1.CDS.5	CDS
Lsi06G006580.1.CDS.4	Lsi06G006580.1.CDS.4	CDS
Lsi06G006580.1.CDS.3	Lsi06G006580.1.CDS.3	CDS
Lsi06G006580.1.CDS.2	Lsi06G006580.1.CDS.2	CDS
Lsi06G006580.1.CDS.1	Lsi06G006580.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36334	FAMILY NOT NAMED	coord: 5..292 score: 2.1E