Lsi07G011340.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi07G011340.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	DUF761 domain protein
Location	chr07 : 16772453 .. 16775478 (+)
Sequence length	318

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTACACATAAAATTGAACTAGACTATGTTCAAATAACTTTCCATAACAAATGTTAAAATTGACATAGAATAAAGGTATAAATACTACTTTGTCCCTATACTTTTGGTTTTTGTTCGTTTTTGTCCTTATACTTTCAAAATGTTTATTTTGATCACTATATTTTAAATTTGGTTTATTTTGGTCCTTATACTTTCAAAATGTTCATTTTGGTCATTGTACTTTCAACTTTGGTTCATTTTAGTCATTGAACTTTTAAAAAGTGACCATTTTGATCCATTAAAAATAATATAAAAATAAAATGAATGAACCAAAATGAACATCTTGAAAGTACATGAACCAAAATGAACTACAATGACTAAAATGAACATATTAAAAGTATATGGATCAAAATAATATTTAAACCTAGAATAAATATACATGACGATATTTGTCAAAAAAAATTTTTTTTATCAAATTTGAAGAATAATTAGCAACTTTTCTCTCTTAACCAAAAAAAATTAGCAACTTTTCTCTTTTAGATGAAATGATTTTTTTTTCTCAAATTTCTATCGATTCACTCGTATGGGTAGCTAATAAGAGCTTAGCTCAGCTGACATCTGTACGTGTTAAGGACCAAGAGATCTGTGATTCAAATCTCCTCCCCCATTTGTACTAAAATCCCAATTGTTTCGGTTGTAAATTTCTTCAAACCAAATAACCATTATTAAATAATGACACCCCTAGTATTCACTCACATGGGAGCAGATTTGAGCGGAAAGTCAATTTGTACCAGCAATTTGTTGGCAGCCTGTCAGTTCATGACTGCTACATTTTATTGTTGTACTTCTCATTCTTCGTTATATCAAGGGCACTCTTGGTCACAGACTTCATTTTTCTTCTCAATCATTTTTTGTATTATATGGCTACTCTAATGCTGATTGAGTTGGTGATCATATCGATTGTCATTCCACCACATGGTTATTATTTCTACTTAGATGATTCAATCATTTCTTGGCAAAGTAAAAAACAAACTATTATTTCACGTTCCTATACAAAATTTGAATATCGTGCCCTTGCGAATGCTACTTTTTAGTTAATATGATTTCGTTGGCTTCTTGTTGATATAGATGTTCCTCAACAGTTTGCTATTATACTTCACTGTGACAATCATAGTGTCATTTAGATTGCTCAGAATGATTGTATTTCATGAACTTACCAAACACATTAAAAATGACTTTCACTTTTTGTTTATCATCATTTGATCATGAGCAAAACTCTCCTCTTACAATTCATCTCCAATACAAAACAACAAACAGATATCTTCACAAAAGATTTGTCACAGGATCGTTTCACTCAGTTGCTTCACAAACTCAAGTTGGTCACTACTCTTCCAGAGTTTCAACCGTCGAAATTTTGTCAGCCTGTTCGAGACACATGGGGTACCATTCTGAATGGTTGGATCGTTATTTGGAGCTCTGGTTTGTCCATAATCGTTGCTGAACAGAACCTGTAAAACTGGGTGAGTTTTGGGATTTTGGTCTCCGTTGGGTTATTTGTTTTACTGTTGGAAAATTTGGTTAATTCTCTAACGTTGATCTTGTGTTAGGTTTGGTTTGTTGAGAAAAGTTTGGGTTCAATCTTAGTTCGAGCCTCATTTTGTGTAAGCTTTTGGAGATCGTCAGTCTAAGCATTTTGGTTGGTTTAAATTTGATTATTTAAGTTAATTTTAATTTATGTTTAGGGTTACTCAAGGCAAGGAAAGAGATGAATTGGTGGTGAAGTGGACTTAGGTAAGTGACGTTATTATCGACTTGCATTTGTGCCAGACGCCCTAGTTCATGTTACCAAAGTTATCAGTGAAATTTGGGTGATTTTTTTTATGATCCATGAAAATTGAGCATACACACTTGTGATGTTTTATGAATTTATGATTTGTTGGTGTGAAACTCTGTTATTGGATGTGTATATATATATATATATATATGAAATACATGTTAGACAGATAGTGGTGATTTATCTTCCCGTCACGCCTCATGTTATGATACCGTGAATCGAGGTTCACTTCCATGTTTTGACGGTGCGCCATCAGACCACTAGACATATGTGAACTGACGAGTTCACCTCCATGTTACCATACCGTGGACCATCAGGTTCACTTTCATGATTTTGACGGTGCGCCTTTAGGCCACTAGACATGAGTGACTGGGCAGTCAAGTATCAGAATACATGCGATCCCGATAATGAGGTCACTTACTGAGTATTTTTATACTCACTCTTTCTTATGTTACAACTTTCAGATAAAGGCGAATGACAGGAAGAATCCGTGACCGTGCCGTTGGGACCATTCAAATGTTTCCGCTCATGTTTTTATGTTTTCATGTTTTTAAATCTCAGTCTTAATATTTAAATTTAGAATATTGGTTTTGCACATTAGATATTTATGCTTGTTTTCATAACTTCTAGGGTACCCCGATCCAAGATTTTTAATTATTTAAATTTGATGAAGTTATTTATTTTATAAATATCTTTGACTTTAGGCAAATAAGTCAAATATATGAAAGGTGTCAGATGCATGCATGAAGTAATGAACTAGAACAAGTCCTAAAGGTCTAGTCGTTACAATCTATAATTACACAATCGAATGAGGCTTGCATATAAATAGCCTCTTCATTTTCGCCGTTTTTCGGTCTTCCTACTTTTCGCTTTCTTTTTCATTTGACAGTCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCCTCCTACCTCAAGAACACGTTGAAGAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGACGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAAATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA

mRNA sequence

ATGATCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCCTCCTACCTCAAGAACACAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGACGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAAATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA

Coding sequence (CDS)

ATGATCCAAAGAAAACAGAGAAAAATGGCGGAAAAAACATCTCCAATGGCCTCCTACCTCAAGAACACAAACTCACTGTATTTGTCCGCCTCTACCGTCCTTCCCGACGGATTCGGATTGTCTTGGAAGATCAGAGGAAACTGTAAAGACGATATCGATCAACGAGCAGAGATTTTCATCGATAATTTTCGCCGTCAATTGAGGTTAGAAAGACAAAATTCTTTGCAATTGAGGTACTATGGAGTTAATAGCTCTGAGACAGAGTATGAAGAGAGATCTCCGCCGCTGCCACTTCCGCCTTTGCCGTCGATTGGATGA

Protein sequence

MIQRKQRKMAEKTSPMASYLKNTNSLYLSASTVLPDGFGLSWKIRGNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSPPLPLPPLPSIG

Homology

[Close]

BLAST of Lsi07G011340.1 vs. TrEMBL
Match: A0A0A0L4Z8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.0e-12
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 46  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP 95
           G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+RSP
Sbjct: 77  GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 125

[Close]

BLAST of Lsi07G011340.1 vs. TrEMBL
Match: A0A0A0L6A3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 4.4e-11
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 49  KDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGV--NSSETEYEERSPPLPLPP 101
           +DD+D RAEIFI+NFRRQLRLERQ SLQLR YGV  NS ET+YEE  PP P PP
Sbjct: 58  EDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPPPP 111

[Close]

BLAST of Lsi07G011340.1 vs. NCBI nr
Match: gi|778688278|ref|XP_011652707.1| (PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 46  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP 95
           G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+RSP
Sbjct: 70  GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 118

[Close]

BLAST of Lsi07G011340.1 vs. NCBI nr
Match: gi|700200554|gb|KGN55687.1| (hypothetical protein Csa_3G004530 [Cucumis sativus])

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-12
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = 1


Query: 46  GNCKDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGVNSSETEYEERSP 95
           G  ++D+DQRAEIFI+NFRRQLRLERQ SLQLRYY VNS ETEYE+RSP
Sbjct: 77  GGYEEDVDQRAEIFIENFRRQLRLERQISLQLRYYRVNSYETEYEQRSP 125

[Close]

BLAST of Lsi07G011340.1 vs. NCBI nr
Match: gi|700200553|gb|KGN55686.1| (hypothetical protein Csa_3G004520 [Cucumis sativus])

HSP 1 Score: 75.5 bits (184), Expect = 6.3e-11
Identity = 40/54 (74.07%), Postives = 44/54 (81.48%), Query Frame = 1


Query: 49  KDDIDQRAEIFIDNFRRQLRLERQNSLQLRYYGV--NSSETEYEERSPPLPLPP 101
           +DD+D RAEIFI+NFRRQLRLERQ SLQLR YGV  NS ET+YEE  PP P PP
Sbjct: 58  EDDVDHRAEIFIENFRRQLRLERQISLQLRLYGVNNNSFETDYEEILPPPPPPP 111

The following BLAST results are available for this feature:

BLAST of Lsi07G011340.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Lsi07G011340.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4Z8_CUCSA	1.0e-12	79.59	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004530 PE=4 SV=1	[more]
A0A0A0L6A3_CUCSA	4.4e-11	74.07	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G004520 PE=4 SV=1	[more]

BLAST of Lsi07G011340.1 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Lsi07G011340.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778688278\|ref\|XP_011652707.1\|	1.5e-12	79.59	PREDICTED: uncharacterized protein LOC105435054 [Cucumis sativus]	[more]
gi\|700200554\|gb\|KGN55687.1\|	1.5e-12	79.59	hypothetical protein Csa_3G004530 [Cucumis sativus]	[more]
gi\|700200553\|gb\|KGN55686.1\|	6.3e-11	74.07	hypothetical protein Csa_3G004520 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR008480	DUF761_pln

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi07G011340	Lsi07G011340	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi07G011340.1.CDS.1	Lsi07G011340.1.CDS.1	CDS
Lsi07G011340.1.CDS.2	Lsi07G011340.1.CDS.2	CDS
Lsi07G011340.1.CDS.3	Lsi07G011340.1.CDS.3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi07G011340.1	Lsi07G011340.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 49..79 score: 5.2
None	No IPR available	PANTHER	PTHR33098	FAMILY NOT NAMED	coord: 50..89 score: 1.5
None	No IPR available	PANTHER	PTHR33098:SF3	SUBFAMILY NOT NAMED	coord: 50..89 score: 1.5