Lsi05G022040.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G022040.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Protein transport protein Sec61 subunit beta
Location	chr05 : 28613567 .. 28613881 (-)
Sequence length	315

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCGCTTGGTCAATAGTCAGCTTGAAAGTTCCAACTTTACTTATTCTTTGTCAATACAGAATGGCACTAGGTGGAGCAAATCCCCAGAGAGGAAGTGCGGCAGCTACAGCCAGCATGCGCAGGAGGAGGACAACAAGTTCTGGTACATCTGGAGGGGCAGCTGGAACAATGCTTCAGTTTTACACGGATGATGCTCCTGGACTCAAGATATCCCCCAATGTTGTTCTCGTCATGAGCATTGGTTTCATAGCTTTTGTTGCCATTCTCCATGTTATGGGTAAGCTGTATTTCGTGCGAAGAGAAGCCTAG

mRNA sequence

ATGTCTTCCGCTTGGTCAATAGTCAGCTTGAAAGTTCCAACTTTACTTATTCTTTGTCAATACAGAATGGCACTAGGTGGAGCAAATCCCCAGAGAGGAAGTGCGGCAGCTACAGCCAGCATGCGCAGGAGGAGGACAACAAGTTCTGGTACATCTGGAGGGGCAGCTGGAACAATGCTTCAGTTTTACACGGATGATGCTCCTGGACTCAAGATATCCCCCAATGTTGTTCTCGTCATGAGCATTGGTTTCATAGCTTTTGTTGCCATTCTCCATGTTATGGGTAAGCTGTATTTCGTGCGAAGAGAAGCCTAG

Coding sequence (CDS)

ATGTCTTCCGCTTGGTCAATAGTCAGCTTGAAAGTTCCAACTTTACTTATTCTTTGTCAATACAGAATGGCACTAGGTGGAGCAAATCCCCAGAGAGGAAGTGCGGCAGCTACAGCCAGCATGCGCAGGAGGAGGACAACAAGTTCTGGTACATCTGGAGGGGCAGCTGGAACAATGCTTCAGTTTTACACGGATGATGCTCCTGGACTCAAGATATCCCCCAATGTTGTTCTCGTCATGAGCATTGGTTTCATAGCTTTTGTTGCCATTCTCCATGTTATGGGTAAGCTGTATTTCGTGCGAAGAGAAGCCTAG

Protein sequence

MSSAWSIVSLKVPTLLILCQYRMALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA

Homology

[Close]

BLAST of Lsi05G022040.1 vs. Swiss-Prot
Match: SC61B_ARATH (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=1 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.8e-26
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 25  LGGANPQRGSAAATASMRRRRTTSS----GTSGGAAGTMLQFYTDDAPGLKISPNVVLVM 84
           +G   PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2   VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61

Query: 85  SIGFIAFVAILHVMGKLYFVR 102
           SIGFIAFVA+LHVMGKLYFV+
Sbjct: 62  SIGFIAFVAVLHVMGKLYFVK 82

[Close]

BLAST of Lsi05G022040.1 vs. Swiss-Prot
Match: SC61B_YARLI (Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SBH1 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 9.2e-07
Identity = 31/69 (44.93%), Postives = 47/69 (68.12%), Query Frame = 1


Query: 29 NPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFV 88
          N QR  A A+   +R  +T S  +GG++ TML+ YTD++ GLK+ P VV+V+S+GFI  V
Sbjct: 20 NAQRQEAKAS---QRPTSTRSVGAGGSSSTMLKLYTDESQGLKVDPVVVMVLSLGFIFSV 79

Query: 89 AILHVMGKL 98
            LH++ K+
Sbjct: 80 VALHILAKV 85

[Close]

BLAST of Lsi05G022040.1 vs. Swiss-Prot
Match: SC61B_CANLF (Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris GN=SEC61B PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 27 GANPQRGSAAATA--SMRRRRTTSSGT------SGGAAGTMLQFYTDDAPGLKISPNVVL 86
          G +P +  AA  A  ++R+R+  S GT      +    G M +FYT+D+PGLK+ P  VL
Sbjct: 15 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 74

Query: 87 VMSIGFIAFVAILHVMGK 97
          VMS+ FIA V +LH+ GK
Sbjct: 75 VMSLLFIASVFMLHIWGK 92

[Close]

BLAST of Lsi05G022040.1 vs. Swiss-Prot
Match: SC61B_HUMAN (Protein transport protein Sec61 subunit beta OS=Homo sapiens GN=SEC61B PE=1 SV=2)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 27 GANPQRGSAAATA--SMRRRRTTSSGT------SGGAAGTMLQFYTDDAPGLKISPNVVL 86
          G +P +  AA  A  ++R+R+  S GT      +    G M +FYT+D+PGLK+ P  VL
Sbjct: 15 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 74

Query: 87 VMSIGFIAFVAILHVMGK 97
          VMS+ FIA V +LH+ GK
Sbjct: 75 VMSLLFIASVFMLHIWGK 92

[Close]

BLAST of Lsi05G022040.1 vs. Swiss-Prot
Match: SC61B_MOUSE (Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3)

HSP 1 Score: 53.5 bits (127), Expect = 1.6e-06
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1


Query: 27 GANPQRGSAAATA--SMRRRRTTSSGT------SGGAAGTMLQFYTDDAPGLKISPNVVL 86
          G +P +  AA  A  ++R+R+  S GT      +    G M +FYT+D+PGLK+ P  VL
Sbjct: 15 GRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVL 74

Query: 87 VMSIGFIAFVAILHVMGK 97
          VMS+ FIA V +LH+ GK
Sbjct: 75 VMSLLFIAAVFMLHIWGK 92

[Close]

BLAST of Lsi05G022040.1 vs. TrEMBL
Match: A0A0A0L6Y8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117430 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 3.1e-33
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61  GFIAFVAVLHVMGKLYFVRREA 82

[Close]

BLAST of Lsi05G022040.1 vs. TrEMBL
Match: I3T8K1_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 7.6e-32
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGGA PQRGSAAA ASMRRRRTTS G SGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGAAPQRGSAAAAASMRRRRTTSGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61  GFIAFVAVLHVMGKLYFVRREA 82

[Close]

BLAST of Lsi05G022040.1 vs. TrEMBL
Match: W9QQ35_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021777 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 9.9e-32
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1


Query: 22  RMALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMS 81
           +M LGGA P RGSAAATASMRRRRTTSSG SGGAAGTMLQFYTDDAPGLKISPNVVL+MS
Sbjct: 510 KMVLGGAAPPRGSAAATASMRRRRTTSSGASGGAAGTMLQFYTDDAPGLKISPNVVLIMS 569

Query: 82  IGFIAFVAILHVMGKLYFVRREA 105
           IGFIAFVAILHVMGKLYFVRRE+
Sbjct: 570 IGFIAFVAILHVMGKLYFVRRES 592

[Close]

BLAST of Lsi05G022040.1 vs. TrEMBL
Match: V7AKD3_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G169200g PE=4 SV=1)

HSP 1 Score: 139.8 bits (351), Expect = 1.9e-30
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGG  P RGSAAATA+MRRRRTT  G SGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGTAPPRGSAAATANMRRRRTTGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61  GFIAFVAVLHVMGKLYFVRREA 82

[Close]

BLAST of Lsi05G022040.1 vs. TrEMBL
Match: V7AM96_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G070500g PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.4e-30
Identity = 74/82 (90.24%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGG  P RGSAAATA+MRRRRTTS G SGGAAG MLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGTAPPRGSAAATANMRRRRTTSGGASGGAAGNMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61  GFIAFVAVLHVMGKLYFVRREA 82

[Close]

BLAST of Lsi05G022040.1 vs. TAIR10
Match: AT2G45070.1 (AT2G45070.1 Preprotein translocase Sec, Sec61-beta subunit protein)

HSP 1 Score: 119.8 bits (299), Expect = 1.0e-27
Identity = 65/81 (80.25%), Postives = 71/81 (87.65%), Query Frame = 1


Query: 25  LGGANPQRGSAAATASMRRRRTTSS----GTSGGAAGTMLQFYTDDAPGLKISPNVVLVM 84
           +G   PQRGSAAATASMRRR+ TS     G SGGAAG+MLQFYTDDAPGLKISPNVVL+M
Sbjct: 2   VGSGAPQRGSAAATASMRRRKPTSGAGGGGASGGAAGSMLQFYTDDAPGLKISPNVVLIM 61

Query: 85  SIGFIAFVAILHVMGKLYFVR 102
           SIGFIAFVA+LHVMGKLYFV+
Sbjct: 62  SIGFIAFVAVLHVMGKLYFVK 82

[Close]

BLAST of Lsi05G022040.1 vs. TAIR10
Match: AT3G60540.1 (AT3G60540.1 Preprotein translocase Sec, Sec61-beta subunit protein)

HSP 1 Score: 118.2 bits (295), Expect = 2.9e-27
Identity = 63/78 (80.77%), Postives = 70/78 (89.74%), Query Frame = 1


Query: 25  LGGANPQRGSAAATASMRRRRTTS-SGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSIG 84
           +GG  PQRGSAAATASMRRR+    S ++GG AGTMLQFYTDDAPGLKISPNVVL+MSIG
Sbjct: 2   VGGGAPQRGSAAATASMRRRKPAGGSSSAGGGAGTMLQFYTDDAPGLKISPNVVLIMSIG 61

Query: 85  FIAFVAILHVMGKLYFVR 102
           FIAFVA+LHVMGKLYFV+
Sbjct: 62  FIAFVAVLHVMGKLYFVK 79

[Close]

BLAST of Lsi05G022040.1 vs. TAIR10
Match: AT5G60460.1 (AT5G60460.1 Preprotein translocase Sec, Sec61-beta subunit protein)

HSP 1 Score: 82.0 bits (201), Expect = 2.3e-16
Identity = 50/80 (62.50%), Postives = 55/80 (68.75%), Query Frame = 1


Query: 27  GANPQRGSAAATASMRRRRTTSSG--TSGGAAGT------MLQFYTDDAPGLKISPNVVL 86
           G    RGSAAATA MRRRR    G  +SGG +G       ML+FYTDDAPGLKISP VVL
Sbjct: 22  GLAAPRGSAAATAGMRRRRLGGGGGVSSGGGSGVGSGSSNMLRFYTDDAPGLKISPTVVL 81

Query: 87  VMSIGFIAFVAILHVMGKLY 99
           +MS+ FI FV  LHV GKLY
Sbjct: 82  IMSLCFIGFVTALHVFGKLY 101

[Close]

BLAST of Lsi05G022040.1 vs. NCBI nr
Match: gi|778676662|ref|XP_011650635.1| (PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus])

HSP 1 Score: 149.1 bits (375), Expect = 4.4e-33
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGGGPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61  GFIAFVAVLHVMGKLYFVRREA 82

[Close]

BLAST of Lsi05G022040.1 vs. NCBI nr
Match: gi|659074770|ref|XP_008437786.1| (PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo])

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-31
Identity = 79/82 (96.34%), Postives = 80/82 (97.56%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGG  PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGG-PQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61  GFIAFVAVLHVMGKLYFVRREA 81

[Close]

BLAST of Lsi05G022040.1 vs. NCBI nr
Match: gi|388521563|gb|AFK48843.1| (unknown [Lotus japonicus])

HSP 1 Score: 144.4 bits (363), Expect = 1.1e-31
Identity = 77/82 (93.90%), Postives = 78/82 (95.12%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGGA PQRGSAAA ASMRRRRTTS G SGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGAAPQRGSAAAAASMRRRRTTSGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVA+LHVMGKLYFVRREA
Sbjct: 61  GFIAFVAVLHVMGKLYFVRREA 82

[Close]

BLAST of Lsi05G022040.1 vs. NCBI nr
Match: gi|703072297|ref|XP_010089248.1| (hypothetical protein L484_021777 [Morus notabilis])

HSP 1 Score: 144.1 bits (362), Expect = 1.4e-31
Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1


Query: 22  RMALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMS 81
           +M LGGA P RGSAAATASMRRRRTTSSG SGGAAGTMLQFYTDDAPGLKISPNVVL+MS
Sbjct: 510 KMVLGGAAPPRGSAAATASMRRRRTTSSGASGGAAGTMLQFYTDDAPGLKISPNVVLIMS 569

Query: 82  IGFIAFVAILHVMGKLYFVRREA 105
           IGFIAFVAILHVMGKLYFVRRE+
Sbjct: 570 IGFIAFVAILHVMGKLYFVRRES 592

[Close]

BLAST of Lsi05G022040.1 vs. NCBI nr
Match: gi|502085814|ref|XP_004488016.1| (PREDICTED: protein transport protein Sec61 subunit beta-like [Cicer arietinum])

HSP 1 Score: 141.4 bits (355), Expect = 9.2e-31
Identity = 75/82 (91.46%), Postives = 76/82 (92.68%), Query Frame = 1


Query: 23  MALGGANPQRGSAAATASMRRRRTTSSGTSGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 82
           MALGG  PQRGSAAATASMRRR+T   G SGGAAGTMLQFYTDDAPGLKISPNVVLVMSI
Sbjct: 1   MALGGGGPQRGSAAATASMRRRKTAGGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSI 60

Query: 83  GFIAFVAILHVMGKLYFVRREA 105
           GFIAFVAILHVMGKLYFVRREA
Sbjct: 61  GFIAFVAILHVMGKLYFVRREA 82

The following BLAST results are available for this feature:

BLAST of Lsi05G022040.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SC61B_ARATH	1.8e-26	80.25	Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g4507...	[more]
SC61B_YARLI	9.2e-07	44.93	Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB...	[more]
SC61B_CANLF	1.6e-06	43.59	Protein transport protein Sec61 subunit beta OS=Canis lupus familiaris GN=SEC61B...	[more]
SC61B_HUMAN	1.6e-06	43.59	Protein transport protein Sec61 subunit beta OS=Homo sapiens GN=SEC61B PE=1 SV=2	[more]
SC61B_MOUSE	1.6e-06	43.59	Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3	[more]

BLAST of Lsi05G022040.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L6Y8_CUCSA	3.1e-33	96.34	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G117430 PE=4 SV=1	[more]
I3T8K1_LOTJA	7.6e-32	93.90	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]
W9QQ35_9ROSA	9.9e-32	91.57	Uncharacterized protein OS=Morus notabilis GN=L484_021777 PE=4 SV=1	[more]
V7AKD3_PHAVU	1.9e-30	90.24	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_011G169200g PE=4 SV=1	[more]
V7AM96_PHAVU	2.4e-30	90.24	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_010G070500g PE=4 SV=1	[more]

BLAST of Lsi05G022040.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G45070.1	1.0e-27	80.25	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT3G60540.1	2.9e-27	80.77	Preprotein translocase Sec, Sec61-beta subunit protein	[more]
AT5G60460.1	2.3e-16	62.50	Preprotein translocase Sec, Sec61-beta subunit protein	[more]

BLAST of Lsi05G022040.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778676662\|ref\|XP_011650635.1\|	4.4e-33	96.34	PREDICTED: protein transport protein Sec61 subunit beta [Cucumis sativus]	[more]
gi\|659074770\|ref\|XP_008437786.1\|	1.1e-31	96.34	PREDICTED: protein transport protein Sec61 subunit beta [Cucumis melo]	[more]
gi\|388521563\|gb\|AFK48843.1\|	1.1e-31	93.90	unknown [Lotus japonicus]	[more]
gi\|703072297\|ref\|XP_010089248.1\|	1.4e-31	91.57	hypothetical protein L484_021777 [Morus notabilis]	[more]
gi\|502085814\|ref\|XP_004488016.1\|	9.2e-31	91.46	PREDICTED: protein transport protein Sec61 subunit beta-like [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0006886	intracellular protein transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0005784	Sec61 translocon complex

Vocabulary: **INTERPRO**
Term	Definition
IPR016482	SecG/Sec61-beta/Sbh

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006886	intracellular protein transport
cellular_component	GO:0005784	Sec61 translocon complex
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi05G022040	Lsi05G022040	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi05G022040.1.CDS.1	Lsi05G022040.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi05G022040.1	Lsi05G022040.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016482	Protein transport protein SecG/Sec61-beta/Sbh	PFAM	PF03911	Sec61_beta	coord: 56..95 score: 3.0
None	No IPR available	PANTHER	PTHR13509:SF2	PREPROTEIN TRANSLOCASE SEC, SEC61-BETA SUBUNIT PROTEIN-RELATED	coord: 22..103 score: 4.5