Lsi10G006130.1 (mRNA) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi10G006130.1
Type	mRNA
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Ribosomal protein S4
Location	chr10 : 8652959 .. 8654829 (-)
Sequence length	798

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TCCTTGCCTGCATTAAGATTTAAAACTTGTCGTCTACTTTTAGGAAATGTTCGGAACAGAGAACTTACAATAATACAACGCCGCATTCTCTGAAAATTGAGAAACAAGAAGAGATCTATTAAGAGACAGATTTATCCGAGAGAAAATCTTAACAGTTACATCCAATCACAAACTACACGAAAGTTGCCCCTTTTTCATGGGGATTTACCCATCACAGAGATGCACAGAGGAACAGAACGAACTTCTTATATCCCTTTTCCACTCAATCCAGAAACAAGATTGGACGTTATTTTGGTTCGTCTCCATTTTAGTGAAACTATTCCTCAAGCAAGGCAGTCGATAAGTCATCTAAGGGTTTGTGTGAATAAAGGAATGGTCCGCATTACTCATTTTAAAGTTTCCCACGGTGATCTAATATCTTTTCAAGAAAATGACGCGAGAATCCGCGGTGAAGAAATAAGGAGATCTTTCTATATCGAAATATCAGTTGAAAAAATCATAGGAAAATTCCTGGATCACCCGGTAAGAATGTGGAGAAGAACTAAAACAGAATGGTTCCACCTACTCAAAACTAAGAGGGGATGCCGCCTACTACTAAAATCCCGGTTTTTGCAACAGTTGCATTCTTCTATGCAAGAAGAAGACTTAGAAAGAACAAAGAAGTTTTGATAAGGAGCTAGCCAACCAAGAGAAATATACGGCTCAACATGCTCAAACCAGCTTGAATGAAGAGAAAAATGAAGCTCAACAAGCTCAGCTTAGCTCAAATGAACCTCATGTTGAAAATCGATGGGAGAACTTTCCAAGTCAACCCAATCATGAGGCAATCATTATGCCACAAGGACCAATAACAAGAGCTAGAGCTAAAAGACTTCAAGATGGATTAAATGCTTGCTTCCAAGCTAATTTTACAACCCATGATGAAAAGTTGCAACCATTTAAGCTTCTAGATACACCTTTTCATCCAAGAGTCATAATGAATCTAAAAATCCAGATTCATTCACATATTTAATTTCCCATGTATGCAATTTAATTTCATGTTTTTATATTTATGAGGGTAGTTGAAAGGGTGTAGATGAATTTAGACAATTTGAAAGGTTATGTCCTTTCATGGTGCCTTTTCAATTAGTATAAATAGGGCTGTAATTCCACATTTTGGAAGGAAGACTTTGAATTAGAATGAATTTTTCATAGAGTAAATCTCTCAAGCTTTTATGCTTTCTTTGTATTCTTGTGTTTAGAATGCATGTTTAGAACTTTCAATCTAGTTTGATCAATTAGATTGTGGAGAGTTCGAAATCTTGAAGTTAGGAACAAGTTCTCCTTTCTTCTTGATCTTTGATCAATCTTCCAAGCCAAATCTGTTTAGCTTTCTTGGGGTTGTCTATCAAATTTGTTTATTGGGGGTTATTCTTATTATTGTTGTGGGGGTTCACCTTGTTTAAAGGGGAGTTCTCAAACGTGATTGAGGTAGTTCCCTTTATCATGTTTGGATCGGAAAAAGTATGCTTAGGTAGTTCCTTCGCTGAGCACAACAGAATGAAGAGGAATTTGTATCATTTGAAATCCCTATTCTTATCGAATAGAAGGAACGAGAAAAACCAAAATCTTCCTACTCGAACAAGAAGTCCTATAGTTGACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGAAAAATCAAAAGGATCAACTACCTACTCATTATTCGGAGGTGAATCATAGAACACTAAAAGCTGTGGTATCTTATGGACCTAGCATAGCTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCAGAAACGGACGTGGCCAAAACATC

mRNA sequence

TCCTTGCCTGCATTAAGATTTAAAACTTGTCGTCTACTTTTAGGAAATATTTATCCGAGAGAAAATCTTAACAGTTACATCCAATCACAAACTACACGAAAGTTGCCCCTTTTTCATGGGGATTTACCCATCACAGAGATGCACAGAGGAACAGAACGAACTTCTTATATCCCTTTTCCACTCAATCCAGAAACAAGATTGGACGTTATTTTGGTTCGTCTCCATTTTAGTGAAACTATTCCTCAAGCAAGGCAGTCGATAAGTCATCTAAGGGTTTGTGTGAATAAAGGAATGGTCCGCATTACTCATTTTAAAGTTTCCCACGGTGATCTAATATCTTTTCAAGAAAATGACGCGAGAATCCGCGGTGAAGAAATAAGGAGATCTTTCTATATCGAAATATCAGTTGAAAAAATCATAGGAAAATTCCTGGATCACCCGGTAAGAATGTGGAGAAGAACTAAAACAGAATGGTTCCACCTACTCAAAACTAAGAGGGGATGCCGCCTACTACTAAAATCCCGAAGGAACGAGAAAAACCAAAATCTTCCTACTCGAACAAGAAGTCCTATAGTTGACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGAAAAATCAAAAGGATCAACTACCTACTCATTATTCGGAGAACACTAAAAGCTGTGGTATCTTATGGACCTAGCATAGCTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCAGAAACGGACGTGGCCAAAACATC

Coding sequence (CDS)

TCCTTGCCTGCATTAAGATTTAAAACTTGTCGTCTACTTTTAGGAAATATTTATCCGAGAGAAAATCTTAACAGTTACATCCAATCACAAACTACACGAAAGTTGCCCCTTTTTCATGGGGATTTACCCATCACAGAGATGCACAGAGGAACAGAACGAACTTCTTATATCCCTTTTCCACTCAATCCAGAAACAAGATTGGACGTTATTTTGGTTCGTCTCCATTTTAGTGAAACTATTCCTCAAGCAAGGCAGTCGATAAGTCATCTAAGGGTTTGTGTGAATAAAGGAATGGTCCGCATTACTCATTTTAAAGTTTCCCACGGTGATCTAATATCTTTTCAAGAAAATGACGCGAGAATCCGCGGTGAAGAAATAAGGAGATCTTTCTATATCGAAATATCAGTTGAAAAAATCATAGGAAAATTCCTGGATCACCCGGTAAGAATGTGGAGAAGAACTAAAACAGAATGGTTCCACCTACTCAAAACTAAGAGGGGATGCCGCCTACTACTAAAATCCCGAAGGAACGAGAAAAACCAAAATCTTCCTACTCGAACAAGAAGTCCTATAGTTGACAACTCTTCTTTATATAGTAATTCGACCTATTGCTCCGCATCCCCCCATCAGTTTACTATGAAGAGAAAAATCAAAAGGATCAACTACCTACTCATTATTCGGAGAACACTAAAAGCTGTGGTATCTTATGGACCTAGCATAGCTCACATCCCTCACGACATAAGATTGAAAGATCCAAACCTTCCTCTTCGGAGCAGAAACGGACGTGGCCAAAACATC

Protein sequence

SLPALRFKTCRLLLGNIYPRENLNSYIQSQTTRKLPLFHGDLPITEMHRGTERTSYIPFPLNPETRLDVILVRLHFSETIPQARQSISHLRVCVNKGMVRITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRRTKTEWFHLLKTKRGCRLLLKSRRNEKNQNLPTRTRSPIVDNSSLYSNSTYCSASPHQFTMKRKIKRINYLLIIRRTLKAVVSYGPSIAHIPHDIRLKDPNLPLRSRNGRGQNI

Homology

[Close]

BLAST of Lsi10G006130.1 vs. Swiss-Prot
Match: RT04_ARATH (Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana GN=RPS4 PE=2 SV=2)

HSP 1 Score: 295.8 bits (756), Expect = 4.7e-79
Identity = 179/355 (50.42%), Postives = 207/355 (58.31%), Query Frame = 1


Query: 2   LPALRFKTCRLLLGN----------------------------IYPRENLNSYIQSQTTR 61
           L  LRF+TCRLL GN                            IYP++ L SYIQ QTTR
Sbjct: 14  LSPLRFQTCRLLSGNVWNRELTIIQRRILRRLRNRKRSIKKRKIYPKKYLTSYIQLQTTR 73

Query: 62  KLPLFHGDLPITEMHRGTERTSYIPFPLNPETRLDVILVRLHFSETIPQARQSISHLRVC 121
           KLP F+GDLPITEMHRGT+RTSYIPF LN ETR DVI +RL+F ETIPQARQ ISH RVC
Sbjct: 74  KLPFFYGDLPITEMHRGTKRTSYIPFLLNLETRFDVIPLRLYFLETIPQARQLISHRRVC 133

Query: 122 VNKGMVRITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR 181
           VNKGMV ITHFK+SHGD+ISFQEN+A IRGEEIRRSFY EI VEKIIGK L  P+RMWRR
Sbjct: 134 VNKGMVSITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEILVEKIIGKLLHQPLRMWRR 193

Query: 182 TKTEWFHLLKTKRGCRLLLKSRRNEKNQNLPTRTRSPIVDNSSLYSNSTYC---SASPHQ 241
           +KTEWFHLLKTKRGCRLLLKSR     Q L +  +   ++ +  + +   C   S + H+
Sbjct: 194 SKTEWFHLLKTKRGCRLLLKSR---FLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHK 253

Query: 242 -----------FTMKRKIKRINYLLIIRRTLKAVV------------------------- 267
                       + +RK K +N   +  RT+  +V                         
Sbjct: 254 RMKRNLLKSLFLSKRRKDKNLN---LPTRTISPIVYNSSLSLYSNSTYCFASPHKLTMKR 313

[Close]

BLAST of Lsi10G006130.1 vs. Swiss-Prot
Match: RT04_MARPO (Ribosomal protein S4, mitochondrial OS=Marchantia polymorpha GN=RPS4 PE=3 SV=2)

HSP 1 Score: 99.4 bits (246), Expect = 6.4e-20
Identity = 65/152 (42.76%), Postives = 81/152 (53.29%), Query Frame = 1


Query: 4   ALRFKTCRLLLGNIYPRENL---------------------NSYIQSQTTRKLPLFHGDL 63
           A RFK CR +L N++  + L                     +  IQ QT +KL LF+G+L
Sbjct: 3   ASRFKVCRQILENVWQTKKLTLKQKFLISELQKQKKNKKQSDFSIQLQTIKKLSLFYGNL 62

Query: 64  PITEMHRGTERTSYIP----FPLNPETRLDVILVRLHFSETIPQARQSISHLRVCVNKGM 123
           PI +M R    T YI        N E RLDVILVRL+F  T+ QARQ ISH  +CVN   
Sbjct: 63  PIKKMQRAKTHT-YIDKKNSLLFNIEKRLDVILVRLNFCSTMFQARQLISHKNICVNYKK 122

Query: 124 VRITHFKVSHGDLISFQENDARIRGEEIRRSF 131
           V I  F+VS+GDLIS QEN        IR++F
Sbjct: 123 VNIPGFQVSNGDLISIQENSLDFFKSNIRKNF 153

[Close]

BLAST of Lsi10G006130.1 vs. Swiss-Prot
Match: RT04_PROWI (Ribosomal protein S4, mitochondrial OS=Prototheca wickerhamii GN=RPS4 PE=3 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 9.6e-08
Identity = 59/235 (25.11%), Postives = 105/235 (44.68%), Query Frame = 1


Query: 33  RKLPLFHGDLPITEMHRGTERTSYIP--FPLN----PETRLDVILVRLHFSETIPQARQS 92
           +KL +F+G +P+ ++H+   +   +P  F  N     E RLDV+L R  F++TI  ARQ+
Sbjct: 164 KKLKMFYGFIPLKQLHKILVQAKAMPGYFSKNFFSLIEKRLDVVLYRSGFTKTIVAARQA 223

Query: 93  ISHLRVCVNKGMVRITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDH 152
             H ++ VN  + RI    +  GD+IS++     ++  EI+ + +  I+   + G  + +
Sbjct: 224 CRHSQIYVNSKVCRIPSTILESGDIISYKNQLDSLKTAEIKNNLFSNINT-NVSGNEVSN 283

Query: 153 PVRMWRRTKTEWFHLLKTKRGCRLLLKSRRNEKNQNLPTRTRSPIVDNSSLYSN-STYCS 212
            V      K     L   K+   LLL   ++  N++     +     N   + N     S
Sbjct: 284 NVSNKVSNKIS-STLALNKQSLLLLLFCAKSIYNESFFVSNKRKFKSNEVTFDNKKEITS 343

Query: 213 ASPHQFTMKRKIKRINYLLIIRRTLKAVVSYGPSIAHIPHDIRLKDPNLPLRSRN 261
           A  +   ++ K  R  Y LI        +S+      I + +  K  NLP+  +N
Sbjct: 344 AIDYTKYLQIKNSRKKYKLITLNNNLDSLSFNIFDKEILNSLSSKQ-NLPVNKQN 395

[Close]

BLAST of Lsi10G006130.1 vs. Swiss-Prot
Match: RR4_CYAPA (Cyanelle 30S ribosomal protein S4 OS=Cyanophora paradoxa GN=rps4 PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 4.0e-06
Identity = 32/96 (33.33%), Postives = 49/96 (51.04%), Query Frame = 1


Query: 64  ETRLDVILVRLHFSETIPQARQSISHLRVCVNKGMVRITHFKVSHGDLISFQENDARIRG 123
           E RLD I+ RL  + TIP +RQ ++H  +CVN  +V I  ++   GD+I+ +E +A  + 
Sbjct: 90  EMRLDNIVFRLGMAPTIPASRQLVNHGHICVNNKVVSIPSYQCKPGDIITVKERNASKKI 149

Query: 124 EEIRRSF--------YIEISVEKIIGKFLDHPVRMW 152
            E    F        ++E    K+ GK  D   R W
Sbjct: 150 VETNLLFPGLANLPSHLEFDKSKLQGKVNDIIQREW 185

[Close]

BLAST of Lsi10G006130.1 vs. Swiss-Prot
Match: RS4_FUSNN (30S ribosomal protein S4 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=rpsD PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.9e-06
Identity = 30/91 (32.97%), Postives = 48/91 (52.75%), Query Frame = 1


Query: 64  ETRLDVILVRLHFSETIPQARQSISHLRVCVNKGMVRITHFKVSHGDLISFQEND----- 123
           E RL+ ++ RL F++T  QARQ +SH  + VN   V I  F+V  GD++S  EN      
Sbjct: 87  ERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIASFRVKVGDIVSVIENSKNVEL 146

Query: 124 ARIRGEEIRRSFYIEISVEKIIGKFLDHPVR 150
            ++  E+     ++E+      GK L +P +
Sbjct: 147 IKLAVEDATPPAWLELDRAAFSGKVLQNPTK 177

[Close]

BLAST of Lsi10G006130.1 vs. TrEMBL
Match: W9RDX6_9ROSA (Ribosomal protein S4 OS=Morus notabilis GN=L484_024916 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 7.5e-100
Identity = 213/313 (68.05%), Postives = 222/313 (70.93%), Query Frame = 1


Query: 5   LRFKTCRLLLGN---------------------------IYPRENLNSYIQSQTTRKLPL 64
           LRFKTCRLL GN                           I PRENLNSYIQSQTTRKLPL
Sbjct: 2   LRFKTCRLLSGNVRKRELTIIQRRILRRLRNKKSHLKRKISPRENLNSYIQSQTTRKLPL 61

Query: 65  FHGDLPITEMHRGTERTSYIPFPLNPETRLDVILVRLHFSETIPQARQSISHLRVCVNKG 124
           FHGDLP    HRG ERTS IPFPLNPETR DVI VRLHF ETIPQARQ ISH RVCVN G
Sbjct: 62  FHGDLP----HRGRERTSNIPFPLNPETRSDVIPVRLHFCETIPQARQPISHRRVCVNNG 121

Query: 125 MVRITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRRTKTE 184
           MV ITH KVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKF   PVRMWRRTKTE
Sbjct: 122 MVSITHLKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKF--RPVRMWRRTKTE 181

Query: 185 WFHLLKTKRGCRLLLKSR--------RNEKNQNLPTR------------TRSPIVDNSSL 244
           WFHLLKTKRGCRLLLKSR          E++  +  +             RSPIV NSS 
Sbjct: 182 WFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLEITNKFGSEKVCLGAEHNRSPIVYNSSF 241

Query: 245 YSNSTYCSASPHQFTMKRKIKRI----NYLLIIRRTLKAVVSYGPSIAHIPHDIRLKDPN 267
           YSN  + SASPHQFTMKR+IKRI    +Y  +  RT KAVVSYGP+I HIPHDIRLKD N
Sbjct: 242 YSNKDF-SASPHQFTMKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDLN 301

[Close]

BLAST of Lsi10G006130.1 vs. TrEMBL
Match: A0A0G3B9G3_9ROSI (Ribosomal protein S4 (Fragment) OS=Francoa sonchifolia GN=rps4 PE=4 SV=1)

HSP 1 Score: 346.7 bits (888), Expect = 2.6e-92
Identity = 199/351 (56.70%), Postives = 215/351 (61.25%), Query Frame = 1


Query: 2   LPALRFKTCRLLLGN---------------------------IYPRENLNSYIQSQTTRK 61
           +PALRFKTCRLL GN                           IYPR+NLNSYIQSQTTRK
Sbjct: 1   MPALRFKTCRLLSGNVRSRELTIIQRRILRRLRKKRRSIKRKIYPRKNLNSYIQSQTTRK 60

Query: 62  LPLFHGDLPITEMHRGTERTSYIPFPLNPETRLDVILVRLHFSETIPQARQSISHLRVCV 121
           LPLFHGDLPITEMHRG ERTSYIPFPLNPETR DVI VRLHF ETIPQARQ ISH RVCV
Sbjct: 61  LPLFHGDLPITEMHRGRERTSYIPFPLNPETRSDVIPVRLHFRETIPQARQPISHRRVCV 120

Query: 122 NKGMVRITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRRT 181
           N GMV ITH KVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLD PVRMWRRT
Sbjct: 121 NNGMVSITHVKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDRPVRMWRRT 180

Query: 182 KTEWFHLLKTKRGCRLLLKSRRNEKNQNLPTRTRSPIVDNSSLYSNSTYC--SASPHQFT 241
           KTEWFHLLKTKRGCR LLKSR     Q L +  +   ++ +  + +   C  S+      
Sbjct: 181 KTEWFHLLKTKRGCRRLLKSR---FLQQLRSSMQKEDLERTKKFGSEKVCLGSSFAEHNR 240

Query: 242 MKRKIKRINYLLIIR-----------RTLKAVVS-------------------------- 267
           MKR +     L + +           RT+  +V                           
Sbjct: 241 MKRNLYHFKSLFLSKRKNEKKRNLPTRTISPIVYNSSLYSNSTYCSASPHQFTMKRRIKR 300

[Close]

BLAST of Lsi10G006130.1 vs. TrEMBL
Match: A0A0U2N8V3_9ROSA (Ribosomal protein S4 (Fragment) OS=Malus hupehensis var. mengshanensis GN=rps4 PE=4 SV=1)

HSP 1 Score: 344.7 bits (883), Expect = 9.8e-92
Identity = 199/352 (56.53%), Postives = 215/352 (61.08%), Query Frame = 1


Query: 1   SLPALRFKTCRLLLGN---------------------------IYPRENLNSYIQSQTTR 60
           ++PALRFKTCRLL GN                           IYPR+NLNSYIQSQTTR
Sbjct: 11  AVPALRFKTCRLLSGNVRNRELTIIQRRILRRLRNKKRSIKRKIYPRKNLNSYIQSQTTR 70

Query: 61  KLPLFHGDLPITEMHRGTERTSYIPFPLNPETRLDVILVRLHFSETIPQARQSISHLRVC 120
           KLPLFHGDLPITEMHRGTERTSYIPFPLNPETR DVI VRLHF ETIPQARQ ISH RVC
Sbjct: 71  KLPLFHGDLPITEMHRGTERTSYIPFPLNPETRSDVIPVRLHFCETIPQARQPISHGRVC 130

Query: 121 VNKGMVRITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR 180
           VN GMV ITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR
Sbjct: 131 VNNGMVSITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR 190

Query: 181 TKTEWFHLLKTKRGCRLLLKSRRNEKNQNLPTRTRSPIVDNSSLYSNSTYC--SASPHQF 240
           TK EWFHLLKT RGCRLLLKSR     + L +  +   ++ +  + +   C  S+     
Sbjct: 191 TKAEWFHLLKTHRGCRLLLKSR---FLRQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHN 250

Query: 241 TMKRKIKRINYLLIIR-----------RTLKAVVS------------------------- 267
            MKR +     L +             RT   +V                          
Sbjct: 251 RMKRNLYHFKSLFLSNRRNKKNRNLPTRTRSPIVYNSSLYRNSTYCSASPHQFTMKRRIK 310

[Close]

BLAST of Lsi10G006130.1 vs. TrEMBL
Match: J9JES1_MALDO (Ribosomal protein S4 OS=Malus domestica GN=rps4 PE=4 SV=1)

HSP 1 Score: 341.7 bits (875), Expect = 8.3e-91
Identity = 198/352 (56.25%), Postives = 214/352 (60.80%), Query Frame = 1


Query: 1   SLPALRFKTCRLLLGN---------------------------IYPRENLNSYIQSQTTR 60
           ++PALRFKTCRLL GN                           IYPR+NLNSYIQSQTTR
Sbjct: 11  AVPALRFKTCRLLSGNVRNRELTIIQRRILRRLRNKKRSIKRKIYPRKNLNSYIQSQTTR 70

Query: 61  KLPLFHGDLPITEMHRGTERTSYIPFPLNPETRLDVILVRLHFSETIPQARQSISHLRVC 120
           KLPLFHGDLPITEMHRGTERTSYIPFPLNPETR DVI VRLHF ETIPQARQ ISH RVC
Sbjct: 71  KLPLFHGDLPITEMHRGTERTSYIPFPLNPETRSDVIPVRLHFCETIPQARQPISHGRVC 130

Query: 121 VNKGMVRITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR 180
           VN GMV ITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR
Sbjct: 131 VNNGMVSITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR 190

Query: 181 TKTEWFHLLKTKRGCRLLLKSRRNEKNQNLPTRTRSPIVDNSSLYSNSTYC--SASPHQF 240
           TK EWFHLLKT RGCRLLLKSR     + L +  +   ++ +  + +   C  S+     
Sbjct: 191 TKAEWFHLLKTHRGCRLLLKSR---FLRQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHN 250

Query: 241 TMKRKIKRINYLLIIR-----------RTLKAVVS------------------------- 267
            MKR +     L +             RT   +V                          
Sbjct: 251 RMKRNLYHFKSLFLSNRRNKKNRNLPTRTRSPIVYNSSLYRNSTYCSASPHQFTMKRRIK 310

[Close]

BLAST of Lsi10G006130.1 vs. TrEMBL
Match: B6VJZ4_VITVI (Ribosomal protein S4 OS=Vitis vinifera GN=rps4 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 1.1e-90
Identity = 198/352 (56.25%), Postives = 214/352 (60.80%), Query Frame = 1


Query: 1   SLPALRFKTCRLLLGN---------------------------IYPRENLNSYIQSQTTR 60
           +LPALRFKTCRLL GN                           IYPR+NLNSYIQSQTTR
Sbjct: 14  TLPALRFKTCRLLPGNVRNRELTIIQRRILRRLRNKKRSIKRKIYPRDNLNSYIQSQTTR 73

Query: 61  KLPLFHGDLPITEMHRGTERTSYIPFPLNPETRLDVILVRLHFSETIPQARQSISHLRVC 120
           KLPLFHGDLPITEMHRGTER SYI FPLN ETR DVI VRLHF ETIPQARQ ISH RVC
Sbjct: 74  KLPLFHGDLPITEMHRGTERNSYILFPLNLETRSDVIPVRLHFCETIPQARQPISHRRVC 133

Query: 121 VNKGMVRITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR 180
           VN  MV ITH KVSHGD+ISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR
Sbjct: 134 VNNRMVSITHLKVSHGDIISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR 193

Query: 181 TKTEWFHLLKTKRGCRLLLKSRRNEKNQNLPTRTRSPIVDNSSLYSNSTYC--SASPHQF 240
           TKTEWFHLLKTKRGCRLLLKSR     Q L +  +   ++ +  + +   C  S+     
Sbjct: 194 TKTEWFHLLKTKRGCRLLLKSR---FLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHN 253

Query: 241 TMKRKIKRINYLLIIR-----------RTLKAVVS------------------------- 267
            MKR +     L + +           RT   +V                          
Sbjct: 254 RMKRNLYHFKSLFLSKRRNEKNRNLPTRTRSPIVYNSSLYSNSTYCSASPHQFTMKRRIK 313

[Close]

BLAST of Lsi10G006130.1 vs. TAIR10
Match: AT2G07734.1 (AT2G07734.1 Alpha-L RNA-binding motif/Ribosomal protein S4 family protein)

HSP 1 Score: 323.2 bits (827), Expect = 1.5e-88
Identity = 188/355 (52.96%), Postives = 214/355 (60.28%), Query Frame = 1


Query: 2   LPALRFKTCRLLLGN----------------------------IYPRENLNSYIQSQTTR 61
           L  LRF+TCRLL GN                            IYP++ L SYIQ QTTR
Sbjct: 14  LSPLRFQTCRLLSGNVRNRELTIIQRRILRRLRNRKRSIKKRKIYPKKYLTSYIQLQTTR 73

Query: 62  KLPLFHGDLPITEMHRGTERTSYIPFPLNPETRLDVILVRLHFSETIPQARQSISHLRVC 121
           KLPLFHGDLPITEMHRGT+RTSYIPFPLNPETR DVI +RLHF ETIPQARQ ISH RVC
Sbjct: 74  KLPLFHGDLPITEMHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETIPQARQPISHRRVC 133

Query: 122 VNKGMVRITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR 181
           VNKGMV ITHFK+SHGD+ISFQEN+A IRGEEIRRSFY EISVEKIIGK L  P+RMWRR
Sbjct: 134 VNKGMVSITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEISVEKIIGKLLHQPLRMWRR 193

Query: 182 TKTEWFHLLKTKRGCRLLLKSRRNEKNQNLPTRTRSPIVDNSSLYSNSTYC---SASPHQ 241
           +KTEWFHLLKTKRGCRLLLKSR     Q L +  +   ++ +  + +   C   S + H+
Sbjct: 194 SKTEWFHLLKTKRGCRLLLKSR---FLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHK 253

Query: 242 -----------FTMKRKIKRINYLLIIRRTLKAVVS------------------------ 267
                       + +RK K +N   +  RT+  +V                         
Sbjct: 254 RMKRNLLKSLFLSKRRKDKNLN---LPTRTISPIVYNSSLSLYSNSTYCFASPHKLTMKR 313

[Close]

BLAST of Lsi10G006130.1 vs. TAIR10
Match: ATMG00290.1 (ATMG00290.1 mitochondrial ribosomal protein S4)

HSP 1 Score: 323.2 bits (827), Expect = 1.5e-88
Identity = 188/355 (52.96%), Postives = 214/355 (60.28%), Query Frame = 1


Query: 2   LPALRFKTCRLLLGN----------------------------IYPRENLNSYIQSQTTR 61
           L  LRF+TCRLL GN                            IYP++ L SYIQ QTTR
Sbjct: 14  LSPLRFQTCRLLSGNVRNRELTIIQRRILRRLRNRKRSIKKRKIYPKKYLTSYIQLQTTR 73

Query: 62  KLPLFHGDLPITEMHRGTERTSYIPFPLNPETRLDVILVRLHFSETIPQARQSISHLRVC 121
           KLPLFHGDLPITEMHRGT+RTSYIPFPLNPETR DVI +RLHF ETIPQARQ ISH RVC
Sbjct: 74  KLPLFHGDLPITEMHRGTKRTSYIPFPLNPETRFDVIPLRLHFLETIPQARQPISHRRVC 133

Query: 122 VNKGMVRITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR 181
           VNKGMV ITHFK+SHGD+ISFQEN+A IRGEEIRRSFY EISVEKIIGK L  P+RMWRR
Sbjct: 134 VNKGMVSITHFKLSHGDIISFQENNAIIRGEEIRRSFYKEISVEKIIGKLLHQPLRMWRR 193

Query: 182 TKTEWFHLLKTKRGCRLLLKSRRNEKNQNLPTRTRSPIVDNSSLYSNSTYC---SASPHQ 241
           +KTEWFHLLKTKRGCRLLLKSR     Q L +  +   ++ +  + +   C   S + H+
Sbjct: 194 SKTEWFHLLKTKRGCRLLLKSR---FLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHK 253

Query: 242 -----------FTMKRKIKRINYLLIIRRTLKAVVS------------------------ 267
                       + +RK K +N   +  RT+  +V                         
Sbjct: 254 RMKRNLLKSLFLSKRRKDKNLN---LPTRTISPIVYNSSLSLYSNSTYCFASPHKLTMKR 313

[Close]

BLAST of Lsi10G006130.1 vs. NCBI nr
Match: gi|297741847|emb|CBI33207.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 395.2 bits (1014), Expect = 9.0e-107
Identity = 216/314 (68.79%), Postives = 231/314 (73.57%), Query Frame = 1


Query: 1   SLPALRFKTCRLLLGN---------------------------IYPRENLNSYIQSQTTR 60
           +LPALRFKTCRLL GN                           IYPR+NLNSYIQSQTTR
Sbjct: 14  TLPALRFKTCRLLPGNVRNRELTIIQRRILRRLRNKKRSIKRKIYPRDNLNSYIQSQTTR 73

Query: 61  KLPLFHGDLPITEMHRGTERTSYIPFPLNPETRLDVILVRLHFSETIPQARQSISHLRVC 120
           KLPLFHGDLPITEMHRGTER SYI FPLN ETR DVI VRLHF ETIPQARQ ISH RVC
Sbjct: 74  KLPLFHGDLPITEMHRGTERNSYILFPLNLETRSDVIPVRLHFCETIPQARQPISHRRVC 133

Query: 121 VNKGMVRITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR 180
           VN  MV ITH KVSHGD+ISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDH VRMWR+
Sbjct: 134 VNNRMVSITHLKVSHGDIISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHLVRMWRK 193

Query: 181 TKTEWFHLLKTKRGCRLLLKSR-----RNEKNQNLPTRTR----------SPIVDNSSLY 240
           TKTEWFHLLKTKRGCRLLLKSR     R+   +    RT+          S   +++ + 
Sbjct: 194 TKTEWFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHNRIK 253

Query: 241 S--NSTYCSASPHQFTMKRKIKRI----NYLLIIRRTLKAVVSYGPSIAHIPHDIRLKDP 267
              NSTYCSASPHQFTMKR+IKRI    +Y  +  RT K VVSYGP+I HIPHDIRLKDP
Sbjct: 254 RNFNSTYCSASPHQFTMKRRIKRIELPTHYSEVNHRTPKVVVSYGPNIGHIPHDIRLKDP 313

[Close]

BLAST of Lsi10G006130.1 vs. NCBI nr
Match: gi|703100717|ref|XP_010096993.1| (Ribosomal protein S4 [Morus notabilis])

HSP 1 Score: 371.7 bits (953), Expect = 1.1e-99
Identity = 213/313 (68.05%), Postives = 222/313 (70.93%), Query Frame = 1


Query: 5   LRFKTCRLLLGN---------------------------IYPRENLNSYIQSQTTRKLPL 64
           LRFKTCRLL GN                           I PRENLNSYIQSQTTRKLPL
Sbjct: 2   LRFKTCRLLSGNVRKRELTIIQRRILRRLRNKKSHLKRKISPRENLNSYIQSQTTRKLPL 61

Query: 65  FHGDLPITEMHRGTERTSYIPFPLNPETRLDVILVRLHFSETIPQARQSISHLRVCVNKG 124
           FHGDLP    HRG ERTS IPFPLNPETR DVI VRLHF ETIPQARQ ISH RVCVN G
Sbjct: 62  FHGDLP----HRGRERTSNIPFPLNPETRSDVIPVRLHFCETIPQARQPISHRRVCVNNG 121

Query: 125 MVRITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRRTKTE 184
           MV ITH KVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKF   PVRMWRRTKTE
Sbjct: 122 MVSITHLKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKF--RPVRMWRRTKTE 181

Query: 185 WFHLLKTKRGCRLLLKSR--------RNEKNQNLPTR------------TRSPIVDNSSL 244
           WFHLLKTKRGCRLLLKSR          E++  +  +             RSPIV NSS 
Sbjct: 182 WFHLLKTKRGCRLLLKSRFLQQLRSSMQEEDLEITNKFGSEKVCLGAEHNRSPIVYNSSF 241

Query: 245 YSNSTYCSASPHQFTMKRKIKRI----NYLLIIRRTLKAVVSYGPSIAHIPHDIRLKDPN 267
           YSN  + SASPHQFTMKR+IKRI    +Y  +  RT KAVVSYGP+I HIPHDIRLKD N
Sbjct: 242 YSNKDF-SASPHQFTMKRRIKRIELPTHYSEVNHRTPKAVVSYGPNIGHIPHDIRLKDLN 301

[Close]

BLAST of Lsi10G006130.1 vs. NCBI nr
Match: gi|825716731|gb|AKJ25867.1| (ribosomal protein S4, partial (mitochondrion) [Francoa sonchifolia])

HSP 1 Score: 346.7 bits (888), Expect = 3.7e-92
Identity = 199/351 (56.70%), Postives = 215/351 (61.25%), Query Frame = 1


Query: 2   LPALRFKTCRLLLGN---------------------------IYPRENLNSYIQSQTTRK 61
           +PALRFKTCRLL GN                           IYPR+NLNSYIQSQTTRK
Sbjct: 1   MPALRFKTCRLLSGNVRSRELTIIQRRILRRLRKKRRSIKRKIYPRKNLNSYIQSQTTRK 60

Query: 62  LPLFHGDLPITEMHRGTERTSYIPFPLNPETRLDVILVRLHFSETIPQARQSISHLRVCV 121
           LPLFHGDLPITEMHRG ERTSYIPFPLNPETR DVI VRLHF ETIPQARQ ISH RVCV
Sbjct: 61  LPLFHGDLPITEMHRGRERTSYIPFPLNPETRSDVIPVRLHFRETIPQARQPISHRRVCV 120

Query: 122 NKGMVRITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRRT 181
           N GMV ITH KVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLD PVRMWRRT
Sbjct: 121 NNGMVSITHVKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDRPVRMWRRT 180

Query: 182 KTEWFHLLKTKRGCRLLLKSRRNEKNQNLPTRTRSPIVDNSSLYSNSTYC--SASPHQFT 241
           KTEWFHLLKTKRGCR LLKSR     Q L +  +   ++ +  + +   C  S+      
Sbjct: 181 KTEWFHLLKTKRGCRRLLKSR---FLQQLRSSMQKEDLERTKKFGSEKVCLGSSFAEHNR 240

Query: 242 MKRKIKRINYLLIIR-----------RTLKAVVS-------------------------- 267
           MKR +     L + +           RT+  +V                           
Sbjct: 241 MKRNLYHFKSLFLSKRKNEKKRNLPTRTISPIVYNSSLYSNSTYCSASPHQFTMKRRIKR 300

[Close]

BLAST of Lsi10G006130.1 vs. NCBI nr
Match: gi|939462385|gb|ALJ78540.1| (ribosomal protein S4, partial (mitochondrion) [Malus hupehensis var. mengshanensis])

HSP 1 Score: 344.7 bits (883), Expect = 1.4e-91
Identity = 199/352 (56.53%), Postives = 215/352 (61.08%), Query Frame = 1


Query: 1   SLPALRFKTCRLLLGN---------------------------IYPRENLNSYIQSQTTR 60
           ++PALRFKTCRLL GN                           IYPR+NLNSYIQSQTTR
Sbjct: 11  AVPALRFKTCRLLSGNVRNRELTIIQRRILRRLRNKKRSIKRKIYPRKNLNSYIQSQTTR 70

Query: 61  KLPLFHGDLPITEMHRGTERTSYIPFPLNPETRLDVILVRLHFSETIPQARQSISHLRVC 120
           KLPLFHGDLPITEMHRGTERTSYIPFPLNPETR DVI VRLHF ETIPQARQ ISH RVC
Sbjct: 71  KLPLFHGDLPITEMHRGTERTSYIPFPLNPETRSDVIPVRLHFCETIPQARQPISHGRVC 130

Query: 121 VNKGMVRITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR 180
           VN GMV ITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR
Sbjct: 131 VNNGMVSITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR 190

Query: 181 TKTEWFHLLKTKRGCRLLLKSRRNEKNQNLPTRTRSPIVDNSSLYSNSTYC--SASPHQF 240
           TK EWFHLLKT RGCRLLLKSR     + L +  +   ++ +  + +   C  S+     
Sbjct: 191 TKAEWFHLLKTHRGCRLLLKSR---FLRQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHN 250

Query: 241 TMKRKIKRINYLLIIR-----------RTLKAVVS------------------------- 267
            MKR +     L +             RT   +V                          
Sbjct: 251 RMKRNLYHFKSLFLSNRRNKKNRNLPTRTRSPIVYNSSLYRNSTYCSASPHQFTMKRRIK 310

[Close]

BLAST of Lsi10G006130.1 vs. NCBI nr
Match: gi|401661931|emb|CBX33388.1| (ribosomal protein S4 (mitochondrion) [Malus domestica])

HSP 1 Score: 341.7 bits (875), Expect = 1.2e-90
Identity = 198/352 (56.25%), Postives = 214/352 (60.80%), Query Frame = 1


Query: 1   SLPALRFKTCRLLLGN---------------------------IYPRENLNSYIQSQTTR 60
           ++PALRFKTCRLL GN                           IYPR+NLNSYIQSQTTR
Sbjct: 11  AVPALRFKTCRLLSGNVRNRELTIIQRRILRRLRNKKRSIKRKIYPRKNLNSYIQSQTTR 70

Query: 61  KLPLFHGDLPITEMHRGTERTSYIPFPLNPETRLDVILVRLHFSETIPQARQSISHLRVC 120
           KLPLFHGDLPITEMHRGTERTSYIPFPLNPETR DVI VRLHF ETIPQARQ ISH RVC
Sbjct: 71  KLPLFHGDLPITEMHRGTERTSYIPFPLNPETRSDVIPVRLHFCETIPQARQPISHGRVC 130

Query: 121 VNKGMVRITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR 180
           VN GMV ITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR
Sbjct: 131 VNNGMVSITHFKVSHGDLISFQENDARIRGEEIRRSFYIEISVEKIIGKFLDHPVRMWRR 190

Query: 181 TKTEWFHLLKTKRGCRLLLKSRRNEKNQNLPTRTRSPIVDNSSLYSNSTYC--SASPHQF 240
           TK EWFHLLKT RGCRLLLKSR     + L +  +   ++ +  + +   C  S+     
Sbjct: 191 TKAEWFHLLKTHRGCRLLLKSR---FLRQLRSSMQEEDLERTKKFGSEKVCLGSSFAEHN 250

Query: 241 TMKRKIKRINYLLIIR-----------RTLKAVVS------------------------- 267
            MKR +     L +             RT   +V                          
Sbjct: 251 RMKRNLYHFKSLFLSNRRNKKNRNLPTRTRSPIVYNSSLYRNSTYCSASPHQFTMKRRIK 310

The following BLAST results are available for this feature:

BLAST of Lsi10G006130.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RT04_ARATH	4.7e-79	50.42	Ribosomal protein S4, mitochondrial OS=Arabidopsis thaliana GN=RPS4 PE=2 SV=2	[more]
RT04_MARPO	6.4e-20	42.76	Ribosomal protein S4, mitochondrial OS=Marchantia polymorpha GN=RPS4 PE=3 SV=2	[more]
RT04_PROWI	9.6e-08	25.11	Ribosomal protein S4, mitochondrial OS=Prototheca wickerhamii GN=RPS4 PE=3 SV=1	[more]
RR4_CYAPA	4.0e-06	33.33	Cyanelle 30S ribosomal protein S4 OS=Cyanophora paradoxa GN=rps4 PE=3 SV=1	[more]
RS4_FUSNN	6.9e-06	32.97	30S ribosomal protein S4 OS=Fusobacterium nucleatum subsp. nucleatum (strain ATC...	[more]

BLAST of Lsi10G006130.1 vs. TrEMBL


Match Name	E-value	Identity	Description
W9RDX6_9ROSA	7.5e-100	68.05	Ribosomal protein S4 OS=Morus notabilis GN=L484_024916 PE=4 SV=1	[more]
A0A0G3B9G3_9ROSI	2.6e-92	56.70	Ribosomal protein S4 (Fragment) OS=Francoa sonchifolia GN=rps4 PE=4 SV=1	[more]
A0A0U2N8V3_9ROSA	9.8e-92	56.53	Ribosomal protein S4 (Fragment) OS=Malus hupehensis var. mengshanensis GN=rps4 P...	[more]
J9JES1_MALDO	8.3e-91	56.25	Ribosomal protein S4 OS=Malus domestica GN=rps4 PE=4 SV=1	[more]
B6VJZ4_VITVI	1.1e-90	56.25	Ribosomal protein S4 OS=Vitis vinifera GN=rps4 PE=4 SV=1	[more]

BLAST of Lsi10G006130.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G07734.1	1.5e-88	52.96	Alpha-L RNA-binding motif/Ribosomal protein S4 family protein	[more]
ATMG00290.1	1.5e-88	52.96	ATMG00290.1 mitochondrial ribosomal protein S4	[more]

BLAST of Lsi10G006130.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|297741847\|emb\|CBI33207.3\|	9.0e-107	68.79	unnamed protein product [Vitis vinifera]	[more]
gi\|703100717\|ref\|XP_010096993.1\|	1.1e-99	68.05	Ribosomal protein S4 [Morus notabilis]	[more]
gi\|825716731\|gb\|AKJ25867.1\|	3.7e-92	56.70	ribosomal protein S4, partial (mitochondrion) [Francoa sonchifolia]	[more]
gi\|939462385\|gb\|ALJ78540.1\|	1.4e-91	56.53	ribosomal protein S4, partial (mitochondrion) [Malus hupehensis var. mengshanens...	[more]
gi\|401661931\|emb\|CBX33388.1\|	1.2e-90	56.25	ribosomal protein S4 (mitochondrion) [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding

Vocabulary: **INTERPRO**
Term	Definition
IPR022801	Ribosomal_S4/S9
IPR002942	S4_RNA-bd

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045903	positive regulation of translational fidelity
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0043231	intracellular membrane-bounded organelle
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0019843	rRNA binding
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Lsi10G006130	Lsi10G006130	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Lsi10G006130.1.CDS.4	Lsi10G006130.1.CDS.4	CDS
Lsi10G006130.1.CDS.3	Lsi10G006130.1.CDS.3	CDS
Lsi10G006130.1.CDS.2	Lsi10G006130.1.CDS.2	CDS
Lsi10G006130.1.CDS.1	Lsi10G006130.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Lsi10G006130.1	Lsi10G006130.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002942	RNA-binding S4 domain	GENE3D	G3DSA:3.10.290.10		coord: 64..149 score: 5.0
IPR002942	RNA-binding S4 domain	PFAM	PF01479	S4	coord: 66..112 score: 5.8
IPR002942	RNA-binding S4 domain	SMART	SM00363	s4_6	coord: 65..126 score: 9.0
IPR002942	RNA-binding S4 domain	PROFILE	PS50889	S4	coord: 65..136 score: 11
IPR022801	Ribosomal protein S4/S9	PANTHER	PTHR11831	30S 40S RIBOSOMAL PROTEIN	coord: 210..266 score: 8.1E-86coord: 64..148 score: 8.1
None	No IPR available	PANTHER	PTHR11831:SF12	RIBOSOMAL PROTEIN S4, MITOCHONDRIAL	coord: 210..266 score: 8.1E-86coord: 64..148 score: 8.1
None	No IPR available	unknown	SSF55174	Alpha-L RNA-binding motif	coord: 11..156 score: 5.76