CmoCh17G012220.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G012220.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	INO80 complex subunit D
Location	Cmo_Chr17 : 9733066 .. 9735917 (+)
Sequence length	1315

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAGAAACCCTACATTCTGCGCCCCTTATCTTGCTTCTCCCTCCCGTTGCCGCCGCCACACAGTTACCAGCACCGGTTTGTTTTTCCCTCTTCGCTGCAGTCGCACGCTGTCGCCCTCCATCGGTAACGTCTGTTTCTTCCTTCTCTCCTTATCTCCCTCTCTGCCCCAACCTCACCGGCACGACTGCTCAGTCTTCTTCTTCTCGTCGCCGACTGCCCACTGAATTTTCTGCTCGTCGCTAAGGTGCCACTCTGTCTTCCGAAACCCCTCCCTCTCTCATGCTCGTTACTGAGTTTGCATGGATTTTTTTTTCTTCAATTCAAGCAATTCGTAAATAGGGTAAAATTGAAAGGAGGTTAAATTTGATCTAAAATATTGCCAAGTCCGACCTATTTTCGACTGGTTTTTTTTGGGTTAAGGAGGTATTTTTAGATGATTGAGGAATTTGCTATGTAAGGTTGTTTTGCTTATTTGGATTGTTCTACTTGAGAATTATGTATTCTGGAAAGTATCTTTCTTATATGCACTCATTTTCAGCCGGTAGTTGAAGTAAATTTAGTATAGATTTTGATTTTACATGAATTCAGGGATTGAGTAAAGCATTTGATTGAGTCTTGGTGCTCTATAGTCTTCACGAAGAGAATAGGGTGATCAGAGAACAGAATTCTTTTTTTTTTTTTTTTTAAACATCAGTGGATTATGCAGTTATTCGTTTCTATAGAATTGTTCTACACCCCTGCAAATTGCATTAGGAATAATCGTTTGGAATGTGACAACTTGGTAGGTCATGGCAGAATCAAACTCGCCTGGTTCGTTTCAATCTCCTCCTGCTCCCCCACATCCTATGGTTATTGATGGGGCGAATCATGATCTAGCTCTAGCCTCTTGTGAATTTTTTACTCGTCGAGAAGTACTCGAGCGTCGGTCCCGGAGAGTGAAACAACTTTGTCGAGTATATAGGGAACTGTACTGGGCTTTAATGGAGGAACTCAAGCGCAAGTACAGGGAGTATTATTGGACATATGGCAAGAGTCCATTTAAGGAGGACGAGAAGGAGGCTGAGGGCATTGGTGATTATCCAGAGGGTATTGGGGAGAACGGAAAGCTAGGATTAGGTTCTGTGACCGGGAGTGATGAGATTAGAAGGTGTGATGTCACAGGTTGCAAGGCAAAGGCGATGGCATTGACAAAATACTGTCATGCTCATATCCTCTCGGATAAAAAGCAGAGGCTCTACAAGGGTTGCACCTTTGTAATCAAGAGGTTTGCATTCTATATCAATTATTTTCGCTGCTTAGTAATACTATGAGTTTTCTACTTAATAAGCAATAGCCATAAATATAGACTCGTCTAGTATTGATATCAATACGATGATTTATAAGTATCTTGAGTTTCTTCTTCTCTTTGGACTGTCTTAAGATATAATTTTGCTAGAGCTCGTCCGAGTAGATCCTAAGGTTAAAGGCTGTATAAAAGCTTTTCTAATGCTGAAGTCTCCCCAAATTCCTATTGTAGAATGTAGCACCATTTCCAATCCTCTTAGTTAAAGAGCAATGGTTATCATCTATCTACTGCTTGAATTTACCAAGTGAAAACCATGTGGTAAGAAACCAACCAAGCTTATTACAATATTTACAGCAAATTTGTTGCCCCAAGGCCTATAGGCTGTTTTTTGTGTCCCAATCCCAAATTATGAGGGCAATGTAAGTGAGTTGAATCTAATTAATGAAATGCAGCCTCCCTTAGGATCTGCTCTATTACGGCCCAAGCCCACCGCTAGCCGATATTTCCTCTTTGAGCTTTCCCTTTAGGCTTCCCCTCAAGGTTTATGAAACGCATCTGCGAGGAGGTTTCCATACCCTTGTAAAGAATGCTTCATTATCCTCCTCAACCGAGGTGGGATTTCACATGCTCCTTCCCAAAGAACTCTCGAATATTTGTAGTGATCCTTGTCATACCCTCTGTACAGTTTAATGATTTTTTTTATAATTGGAAGATAGTCAACATGGTTGAGCTGAATTAGATGGTCACACCTTTTGATTGCATTGATCCAAAGTTGATGTCCGCACACTTTGGTTAAGCTTTTATTTTTCATTTGGGGTCTTTTGTATTTGTATCCTTCCCTGGAATTAGAAGCAATGTACATTGACATTCCGTATAATGGGTTGGCATAGATGTGTTGTGTTGAGGAAACTATGTTTTTTTCTTTTTTTTTTTTTTTGCGTTTTTTGTTAACAAGAAATTCGCTTTCATTTGCAGTATGCAGTCCGGACCGCTTCTATGTTCAAAGCCTGTTTTAAGATCTACTGTTCCTTGCTACTGCCCTGGTCATCTACAAAAAGGCGAAAAGTGTTTAGCTAGAGATTTAAGAAAGGCAGGTCTTAACGTCTCGTCGACTAGTAAACTTCGTCCTGATTTCCATGTATTAGTAGCTGAATGCGTTCGCCAAATACAAGTCAAAAGAAGGGCGGCGAGAAAGGCCACTGCTGTTAAAATTGAAAGCAACTGAGAAGGTGAAGACTAGTTGTTAGGCCCCTCAGTTTGAATAAGAACATGTTGCAGTTGGTACATGTGTATTCAATCCAACCCGAAACCCCCAATGGAAGAATTGTTGATAAAACCAATTTTCGTGTACGATCCAATCCCTTGTTCCTTCCTCTCCCTTGCTGCACATTTGTTGTGTAATATTCGATCAAAAGGTCGATGCAATGTGCAGATGATTAGCAGATTGCAGGGATGTACATTCCTTCTCGTGTTTTATGAAAGGACCGATTTAGTGTCAGCTTCCTTCTCTACAGGGTTTGCTGGTATCATTTTTCCCAACTTGCAATAAAGGATTATAATCAAT

mRNA sequence

AAAAAAGAAACCCTACATTCTGCGCCCCTTATCTTGCTTCTCCCTCCCGTTGCCGCCGCCACACAGTTACCAGCACCGGTTTGTTTTTCCCTCTTCGCTGCAGTCGCACGCTGTCGCCCTCCATCGGTAACGTCTGTTTCTTCCTTCTCTCCTTATCTCCCTCTCTGCCCCAACCTCACCGGCACGACTGCTCAGTCTTCTTCTTCTCGTCGCCGACTGCCCACTGAATTTTCTGCTCGTCGCTAAGGTCATGGCAGAATCAAACTCGCCTGGTTCGTTTCAATCTCCTCCTGCTCCCCCACATCCTATGGTTATTGATGGGGCGAATCATGATCTAGCTCTAGCCTCTTGTGAATTTTTTACTCGTCGAGAAGTACTCGAGCGTCGGTCCCGGAGAGTGAAACAACTTTGTCGAGTATATAGGGAACTGTACTGGGCTTTAATGGAGGAACTCAAGCGCAAGTACAGGGAGTATTATTGGACATATGGCAAGAGTCCATTTAAGGAGGACGAGAAGGAGGCTGAGGGCATTGGTGATTATCCAGAGGGTATTGGGGAGAACGGAAAGCTAGGATTAGGTTCTGTGACCGGGAGTGATGAGATTAGAAGGTGTGATGTCACAGGTTGCAAGGCAAAGGCGATGGCATTGACAAAATACTGTCATGCTCATATCCTCTCGGATAAAAAGCAGAGGCTCTACAAGGGTTGCACCTTTGTAATCAAGAGTATGCAGTCCGGACCGCTTCTATGTTCAAAGCCTGTTTTAAGATCTACTGTTCCTTGCTACTGCCCTGGTCATCTACAAAAAGGCGAAAAGTGTTTAGCTAGAGATTTAAGAAAGGCAGGTCTTAACGTCTCGTCGACTAGTAAACTTCGTCCTGATTTCCATGTATTAGTAGCTGAATGCGTTCGCCAAATACAAGTCAAAAGAAGGGCGGCGAGAAAGGCCACTGCTGTTAAAATTGAAAGCAACTGAGAAGGTGAAGACTAGTTGTTAGGCCCCTCAGTTTGAATAAGAACATGTTGCAGTTGGTACATGTGTATTCAATCCAACCCGAAACCCCCAATGGAAGAATTGTTGATAAAACCAATTTTCGTGTACGATCCAATCCCTTGTTCCTTCCTCTCCCTTGCTGCACATTTGTTGTGTAATATTCGATCAAAAGGTCGATGCAATGTGCAGATGATTAGCAGATTGCAGGGATGTACATTCCTTCTCGTGTTTTATGAAAGGACCGATTTAGTGTCAGCTTCCTTCTCTACAGGGTTTGCTGGTATCATTTTTCCCAACTTGCAATAAAGGATTATAATCAAT

Coding sequence (CDS)

ATGGCAGAATCAAACTCGCCTGGTTCGTTTCAATCTCCTCCTGCTCCCCCACATCCTATGGTTATTGATGGGGCGAATCATGATCTAGCTCTAGCCTCTTGTGAATTTTTTACTCGTCGAGAAGTACTCGAGCGTCGGTCCCGGAGAGTGAAACAACTTTGTCGAGTATATAGGGAACTGTACTGGGCTTTAATGGAGGAACTCAAGCGCAAGTACAGGGAGTATTATTGGACATATGGCAAGAGTCCATTTAAGGAGGACGAGAAGGAGGCTGAGGGCATTGGTGATTATCCAGAGGGTATTGGGGAGAACGGAAAGCTAGGATTAGGTTCTGTGACCGGGAGTGATGAGATTAGAAGGTGTGATGTCACAGGTTGCAAGGCAAAGGCGATGGCATTGACAAAATACTGTCATGCTCATATCCTCTCGGATAAAAAGCAGAGGCTCTACAAGGGTTGCACCTTTGTAATCAAGAGTATGCAGTCCGGACCGCTTCTATGTTCAAAGCCTGTTTTAAGATCTACTGTTCCTTGCTACTGCCCTGGTCATCTACAAAAAGGCGAAAAGTGTTTAGCTAGAGATTTAAGAAAGGCAGGTCTTAACGTCTCGTCGACTAGTAAACTTCGTCCTGATTTCCATGTATTAGTAGCTGAATGCGTTCGCCAAATACAAGTCAAAAGAAGGGCGGCGAGAAAGGCCACTGCTGTTAAAATTGAAAGCAACTGA

Homology

[Close]

BLAST of CmoCh17G012220.1 vs. Swiss-Prot
Match: IN80D_DICDI (INO80 complex subunit D OS=Dictyostelium discoideum GN=DDB_G0288447 PE=3 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-07
Identity = 26/69 (37.68%), Postives = 39/69 (56.52%), Query Frame = 1


Query: 116 DEIRRCDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRST 175
           +E   C    CK K M L+KYC++HIL DK Q+L+  CT+ + + +     C  P+L+  
Sbjct: 526 EEGNLCLSVNCKVKPMLLSKYCYSHILQDKDQKLFHECTYQLSANKK----CGYPILKVQ 585

Query: 176 VPCYCPGHL 185
           +P  C  HL
Sbjct: 586 IPTLCREHL 590

[Close]

BLAST of CmoCh17G012220.1 vs. TrEMBL
Match: A0A0A0K4I2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G337070 PE=4 SV=1)

HSP 1 Score: 428.3 bits (1100), Expect = 6.1e-117
Identity = 210/241 (87.14%), Postives = 223/241 (92.53%), Query Frame = 1


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MAESNSPGSFQ PP  P P++IDGA+ D ALA+    +RREVLERRSRR KQLCR+++EL
Sbjct: 1   MAESNSPGSFQPPPVTPLPILIDGADRDRALATSMICSRREVLERRSRRAKQLCRIFKEL 60

Query: 61  YWALMEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YW L+EELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGL S TGSDEIRR
Sbjct: 61  YWFLLEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLASATGSDEIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC
Sbjct: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180

Query: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240
            GHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVL+AE VRQIQ KRRA ++ATA+KIES
Sbjct: 181 SGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLIAEYVRQIQSKRRATKRATAIKIES 240

Query: 241 N 242
           N
Sbjct: 241 N 241

[Close]

BLAST of CmoCh17G012220.1 vs. TrEMBL
Match: W9SSR1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_011783 PE=4 SV=1)

HSP 1 Score: 291.2 bits (744), Expect = 1.2e-75
Identity = 147/228 (64.47%), Postives = 173/228 (75.88%), Query Frame = 1


Query: 14  PAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMEELKRKYR 73
           P+P  PM IDG++ D ALA   + +RREVLERR R  KQL RVYR  YWALME++K K+R
Sbjct: 30  PSPSSPMTIDGSDRDAALAKSAWLSRREVLERRCRLAKQLARVYRHHYWALMEDVKAKHR 89

Query: 74  EYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLG--SVTGSDEIRRCDVTGCKAKAM 133
           +YYWT+GKSPFK+DE  A           ENGKLGLG  +  G D+I+RC VTGCK KAM
Sbjct: 90  DYYWTFGKSPFKDDETAAAA------ATAENGKLGLGLGNSGGGDDIKRCQVTGCKTKAM 149

Query: 134 ALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQKGEKCL 193
           ALTK+CHAHIL+D +Q+LY+GC +VIKSMQSGPL C KP+LRST P  CP H QKGEKCL
Sbjct: 150 ALTKFCHAHILNDPQQKLYRGCQYVIKSMQSGPLKCCKPILRSTAPPLCPTHFQKGEKCL 209

Query: 194 ARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIE 240
            RDLRKAGLNVSS + L P FHV+VAE + QIQ KRRAARKA+  K+E
Sbjct: 210 IRDLRKAGLNVSSLTNLAPKFHVIVAEYICQIQSKRRAARKASVRKVE 251

[Close]

BLAST of CmoCh17G012220.1 vs. TrEMBL
Match: F6I221_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0207g00060 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 2.2e-66
Identity = 129/215 (60.00%), Postives = 166/215 (77.21%), Query Frame = 1


Query: 28  DLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMEELKRKYREYYWTYGKSPFKED 87
           D  L+S  + TR+EV+ RRSRRVKQL + YR  YW+LM+ELK +YREYYW YG+S F+ED
Sbjct: 16  DAVLSSSRYLTRQEVIRRRSRRVKQLAKCYRAHYWSLMQELKIRYREYYWKYGRSAFQED 75

Query: 88  EK-EAEGIGDYPEGIGENGKLGLGSVTGSD--EIRRCDVTGCKAKAMALTKYCHAHILSD 147
           EK E EG+    E +  +GKLGLG   G +  +++RC V+GCK+KAMALT++CH HILSD
Sbjct: 76  EKREGEGVEGTGENLNGHGKLGLGLGIGENGFDVKRCAVSGCKSKAMALTRFCHPHILSD 135

Query: 148 KKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQKGEKCLARDLRKAGLNVSS 207
            KQ+LYKGC+FVIKS+Q+GP+LC KP+LRSTVP  CP H QK E+ +   L+KAGLN +S
Sbjct: 136 SKQKLYKGCSFVIKSVQAGPVLCGKPILRSTVPSLCPIHFQKAERQVNNALKKAGLNAAS 195

Query: 208 TSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIE 240
           +SKL P FHV+VAE V QIQ KRRAA++A+  K+E
Sbjct: 196 SSKLAPKFHVIVAEYVHQIQTKRRAAQRASVNKVE 230

[Close]

BLAST of CmoCh17G012220.1 vs. TrEMBL
Match: F6I219_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0207g00020 PE=4 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.9e-66
Identity = 129/215 (60.00%), Postives = 166/215 (77.21%), Query Frame = 1


Query: 28  DLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMEELKRKYREYYWTYGKSPFKED 87
           D  L+S  + TR+EV+ RRSRRVKQL + YR  YW+LM+ELK +YREYYW YG+S F+ED
Sbjct: 16  DAVLSSSRYLTRQEVIRRRSRRVKQLSKCYRAHYWSLMQELKIRYREYYWKYGRSAFQED 75

Query: 88  EK-EAEGIGDYPEGIGENGKLGLGSVTGSD--EIRRCDVTGCKAKAMALTKYCHAHILSD 147
           EK E EG+    E +  +GKLGLG   G +  +++RC V+GCK+KAMALT++CH HILSD
Sbjct: 76  EKREGEGVEGTGENLNGHGKLGLGLGIGENGFDVKRCAVSGCKSKAMALTRFCHPHILSD 135

Query: 148 KKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQKGEKCLARDLRKAGLNVSS 207
            KQ+LYKGC+FVIKS+Q+GP+LC KP+LRSTVP  CP H QK E+ +   L+KAGLN +S
Sbjct: 136 SKQKLYKGCSFVIKSVQAGPVLCGKPILRSTVPSLCPIHFQKAERQVNNALKKAGLNAAS 195

Query: 208 TSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIE 240
           +SKL P FHV+VAE V QIQ KRRAA++A+  K+E
Sbjct: 196 SSKLAPKFHVIVAEYVHQIQTKRRAAQRASVNKVE 230

[Close]

BLAST of CmoCh17G012220.1 vs. TrEMBL
Match: A0A067JSQ3_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18075 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 3.7e-66
Identity = 137/238 (57.56%), Postives = 166/238 (69.75%), Query Frame = 1


Query: 13  PPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMEELKRKY 72
           PP  P PM IDG+  D  L+S    T  EV+ RRSRR+KQL ++YR  YWALMEELK KY
Sbjct: 6   PPPQPEPMTIDGSAVDSVLSSSSHLTHEEVVTRRSRRIKQLSKIYRTHYWALMEELKTKY 65

Query: 73  REYYWTYGKSPFKEDEKEA------EGIGDYPEGIGE-NGKLGL-GSVTGSDE---IRRC 132
           +EYYW YGKSPFKED+K+       E +G+   G+GE NGKLG  G  +  DE   +R+C
Sbjct: 66  KEYYWKYGKSPFKEDDKKRKRDDSKENLGN---GVGESNGKLGFKGDESQDDEGQGLRKC 125

Query: 133 DVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCP 192
            V GCKA  MALT++CH HIL D KQ+LYKGCTFV+KS Q  P++C KP+L STVP  CP
Sbjct: 126 AVGGCKATPMALTRFCHLHILLDSKQKLYKGCTFVVKSAQGRPVVCGKPILSSTVPALCP 185

Query: 193 GHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIE 240
            H QK E  +AR LRKAGLNVSS SK+ P FHV+V E V QIQ KRRA++K    K++
Sbjct: 186 PHFQKAETYVARALRKAGLNVSSPSKIAPKFHVIVREFVHQIQSKRRASQKENVAKVQ 240

[Close]

BLAST of CmoCh17G012220.1 vs. TAIR10
Match: AT2G31600.1 (AT2G31600.1 unknown protein)

HSP 1 Score: 183.3 bits (464), Expect = 1.7e-46
Identity = 110/246 (44.72%), Postives = 143/246 (58.13%), Query Frame = 1


Query: 6   SPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALM 65
           +P +   P     P+ +  +  D  LA     TR E+L+RRS  +KQL + YR+ YWALM
Sbjct: 49  NPSTSGLPSTSNSPITM--SQEDEILARSSHITRSELLKRRSHNLKQLAKCYRDNYWALM 108

Query: 66  EELKRKYREYYWTYGKSPFKEDEKEA--------EGI----GDYPEGIGENGKLGLGSVT 125
           E++K ++R+Y+W YG S FK++  ++        EG     GD  EG G+N     G  +
Sbjct: 109 EDVKAQHRDYWWKYGISQFKDENNQSNKRRRLGQEGDIGDGGDAVEGSGDNVTNNDGVKS 168

Query: 126 GSDEIRRCD--VTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPV 185
                  C   + GCKAKAMALTKYC  HIL D KQ+LY GCT VIK   +GPLLC KP 
Sbjct: 169 DQYANSNCGSCMYGCKAKAMALTKYCQLHILKDSKQKLYTGCTNVIKRAPAGPLLCGKPT 228

Query: 186 LRSTVPCYCPGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAAR 238
           L STVP  C  H QK +K +A+ L+ AG NVSSTSK  P  HV+VA  V  IQ KR+  +
Sbjct: 229 LASTVPALCNIHFQKAQKHVAKALKDAGHNVSSTSKPPPKLHVIVAAFVHHIQAKRKNPQ 288

[Close]

BLAST of CmoCh17G012220.1 vs. TAIR10
Match: AT1G05860.1 (AT1G05860.1 unknown protein)

HSP 1 Score: 176.4 bits (446), Expect = 2.1e-44
Identity = 108/240 (45.00%), Postives = 137/240 (57.08%), Query Frame = 1


Query: 5   NSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWAL 64
           N+P +  + P       I  A  D  L +    TR E+L RRS  +KQL R YR+ YWAL
Sbjct: 41  NNPSTSSNSP-------ISMAVEDQILGNSNHLTRPELLRRRSHNLKQLSRCYRDHYWAL 100

Query: 65  MEELKRKYREYYWTYGKSPFKEDE------KEAEG-IGDYPEGIGENGKLGLGSVTGSDE 124
           ME+LK ++R Y W YG SPFK++       ++ EG  GD  EG G+N       V   + 
Sbjct: 101 MEDLKAQHRYYSWNYGVSPFKDENYHQNKRRKVEGQTGDEIEGSGDNDNNNNDGVKAGNC 160

Query: 125 IRRCDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVP 184
           +  C  +GCK+KAMALT YC  HIL DKKQ+LY  CT+V K  QS  + C KP L STVP
Sbjct: 161 VA-CG-SGCKSKAMALTNYCQLHILMDKKQKLYTSCTYVNKRAQSKAITCPKPTLASTVP 220

Query: 185 CYCPGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVK 238
             C  H QK +K +AR L+ AG NVSS S+  P  H +VA  V  IQ KR+  RK   +K
Sbjct: 221 ALCNVHFQKAQKDVARALKDAGHNVSSASRPPPKLHDIVAAFVHHIQAKRKDPRKEGKLK 271

[Close]

BLAST of CmoCh17G012220.1 vs. TAIR10
Match: AT3G53860.1 (AT3G53860.1 unknown protein)

HSP 1 Score: 174.9 bits (442), Expect = 6.1e-44
Identity = 101/211 (47.87%), Postives = 129/211 (61.14%), Query Frame = 1


Query: 28  DLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMEELKRKYREYYWTYGKSPFKED 87
           D  LAS    TR E+L RR+  +KQL + Y+  YWALME+LK ++R+Y+  YG S FK++
Sbjct: 65  DEILASSSHLTRPELLRRRADNLKQLAKCYKNHYWALMEDLKAQHRDYWCKYGVSQFKDE 124

Query: 88  EKEAEGIGDY-PEGIGENGKLGLGSVTGSDEIRRCDVTGCKAKAMALTKYCHAHILSDKK 147
           + ++       PEG G+ G  G      +     C + GCKAKAMALTKYC  HIL D K
Sbjct: 125 QNQSNKRRRLDPEGSGDKGNDGDQYANSNSGF--C-MYGCKAKAMALTKYCQLHILKDSK 184

Query: 148 QRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQKGEKCLARDLRKAGLNVSSTS 207
           Q+LY GCT VI    +GPLLC KP L STVP  C  H QK +K +A+ L+ AG NVSSTS
Sbjct: 185 QKLYTGCTNVINRSPAGPLLCGKPTLASTVPVLCNVHYQKAQKNVAKALKDAGHNVSSTS 244

Query: 208 KLRPDFHVLVAECVRQIQVKRRAARKATAVK 238
           K  P  HV+VA  V  IQ +R+   K   +K
Sbjct: 245 KPPPKLHVIVAAFVHHIQAQRKNPHKEGKLK 272

[Close]

BLAST of CmoCh17G012220.1 vs. NCBI nr
Match: gi|659092905|ref|XP_008447279.1| (PREDICTED: INO80 complex subunit D-like isoform X1 [Cucumis melo])

HSP 1 Score: 430.3 bits (1105), Expect = 2.3e-117
Identity = 211/241 (87.55%), Postives = 224/241 (92.95%), Query Frame = 1


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MA+SNSPGSFQ PP  P P++IDGA+ D ALAS    +RREVLERRSRR KQLCR+++EL
Sbjct: 1   MADSNSPGSFQPPPVTPFPILIDGADRDRALASSMVCSRREVLERRSRRAKQLCRIFKEL 60

Query: 61  YWALMEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YW L+EELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGS TGSDEIRR
Sbjct: 61  YWFLLEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSSTGSDEIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC
Sbjct: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180

Query: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240
            GHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVL+AE VRQIQ KRRA ++ATA+KIES
Sbjct: 181 SGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLIAEYVRQIQSKRRATKRATAIKIES 240

Query: 241 N 242
           N
Sbjct: 241 N 241

[Close]

BLAST of CmoCh17G012220.1 vs. NCBI nr
Match: gi|449443790|ref|XP_004139660.1| (PREDICTED: INO80 complex subunit D [Cucumis sativus])

HSP 1 Score: 428.3 bits (1100), Expect = 8.7e-117
Identity = 210/241 (87.14%), Postives = 223/241 (92.53%), Query Frame = 1


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MAESNSPGSFQ PP  P P++IDGA+ D ALA+    +RREVLERRSRR KQLCR+++EL
Sbjct: 1   MAESNSPGSFQPPPVTPLPILIDGADRDRALATSMICSRREVLERRSRRAKQLCRIFKEL 60

Query: 61  YWALMEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YW L+EELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGL S TGSDEIRR
Sbjct: 61  YWFLLEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLASATGSDEIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180
           CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC
Sbjct: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYC 180

Query: 181 PGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIES 240
            GHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVL+AE VRQIQ KRRA ++ATA+KIES
Sbjct: 181 SGHLQKGEKCLARDLRKAGLNVSSTSKLRPDFHVLIAEYVRQIQSKRRATKRATAIKIES 240

Query: 241 N 242
           N
Sbjct: 241 N 241

[Close]

BLAST of CmoCh17G012220.1 vs. NCBI nr
Match: gi|703150749|ref|XP_010109941.1| (hypothetical protein L484_011783 [Morus notabilis])

HSP 1 Score: 291.2 bits (744), Expect = 1.7e-75
Identity = 147/228 (64.47%), Postives = 173/228 (75.88%), Query Frame = 1


Query: 14  PAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMEELKRKYR 73
           P+P  PM IDG++ D ALA   + +RREVLERR R  KQL RVYR  YWALME++K K+R
Sbjct: 30  PSPSSPMTIDGSDRDAALAKSAWLSRREVLERRCRLAKQLARVYRHHYWALMEDVKAKHR 89

Query: 74  EYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLG--SVTGSDEIRRCDVTGCKAKAM 133
           +YYWT+GKSPFK+DE  A           ENGKLGLG  +  G D+I+RC VTGCK KAM
Sbjct: 90  DYYWTFGKSPFKDDETAAAA------ATAENGKLGLGLGNSGGGDDIKRCQVTGCKTKAM 149

Query: 134 ALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQKGEKCL 193
           ALTK+CHAHIL+D +Q+LY+GC +VIKSMQSGPL C KP+LRST P  CP H QKGEKCL
Sbjct: 150 ALTKFCHAHILNDPQQKLYRGCQYVIKSMQSGPLKCCKPILRSTAPPLCPTHFQKGEKCL 209

Query: 194 ARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKATAVKIE 240
            RDLRKAGLNVSS + L P FHV+VAE + QIQ KRRAARKA+  K+E
Sbjct: 210 IRDLRKAGLNVSSLTNLAPKFHVIVAEYICQIQSKRRAARKASVRKVE 251

[Close]

BLAST of CmoCh17G012220.1 vs. NCBI nr
Match: gi|659092907|ref|XP_008447280.1| (PREDICTED: INO80 complex subunit D-like isoform X2 [Cucumis melo])

HSP 1 Score: 280.4 bits (716), Expect = 2.9e-72
Identity = 136/158 (86.08%), Postives = 145/158 (91.77%), Query Frame = 1


Query: 1   MAESNSPGSFQSPPAPPHPMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYREL 60
           MA+SNSPGSFQ PP  P P++IDGA+ D ALAS    +RREVLERRSRR KQLCR+++EL
Sbjct: 1   MADSNSPGSFQPPPVTPFPILIDGADRDRALASSMVCSRREVLERRSRRAKQLCRIFKEL 60

Query: 61  YWALMEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSVTGSDEIRR 120
           YW L+EELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGS TGSDEIRR
Sbjct: 61  YWFLLEELKRKYREYYWTYGKSPFKEDEKEAEGIGDYPEGIGENGKLGLGSSTGSDEIRR 120

Query: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIK 159
           CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIK
Sbjct: 121 CDVTGCKAKAMALTKYCHAHILSDKKQRLYKGCTFVIK 158

[Close]

BLAST of CmoCh17G012220.1 vs. NCBI nr
Match: gi|747075310|ref|XP_011084684.1| (PREDICTED: INO80 complex subunit D-like [Sesamum indicum])

HSP 1 Score: 270.8 bits (691), Expect = 2.3e-69
Identity = 145/235 (61.70%), Postives = 169/235 (71.91%), Query Frame = 1


Query: 19  PMVIDGANHDLALASCEFFTRREVLERRSRRVKQLCRVYRELYWALMEELKRKYREYYWT 78
           P+ IDG+ HD AL+  EF TR EV+ RR+RRVKQL R+YR+ YWALMEELK KYREYYW 
Sbjct: 53  PIRIDGSEHDAALSKSEFLTRPEVINRRARRVKQLARIYRDHYWALMEELKLKYREYYWE 112

Query: 79  YGKSPF---KEDEKEAEGIGDYPEGIGEN---GKLGL-GSVTGSDEIRRCDVTGCKAKAM 138
           YGKSPF   +E+EK     GD      EN   G LG+ G    S+   RC V GCKAKAM
Sbjct: 113 YGKSPFLDDEENEKMNSNRGDCTGSTAENPGNGNLGINGGSVNSNVASRCGVHGCKAKAM 172

Query: 139 ALTKYCHAHILSDKKQRLYKGCTFVIKSMQSGPLLCSKPVLRSTVPCYCPGHLQKGEKCL 198
           ALT++CH HILSD KQ+LYK C+F IKS  +GP+LC KP+LRSTVP YCP H QK EK +
Sbjct: 173 ALTRFCHMHILSDAKQKLYKACSFSIKSSTTGPILCGKPILRSTVPSYCPLHFQKAEKHM 232

Query: 199 ARDLRKAGLNVSSTSKLRPDFHVLVAECVRQIQVKRRAARKAT-----AVKIESN 242
            R L+KAGLNVSSTSKL P FHV++AE VRQIQ KRRAA+KA       VK E+N
Sbjct: 233 VRALKKAGLNVSSTSKLAPKFHVIIAEYVRQIQQKRRAAQKANLENAEVVKEENN 287

The following BLAST results are available for this feature:

BLAST of CmoCh17G012220.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
IN80D_DICDI	1.1e-07	37.68	INO80 complex subunit D OS=Dictyostelium discoideum GN=DDB_G0288447 PE=3 SV=1	[more]

BLAST of CmoCh17G012220.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K4I2_CUCSA	6.1e-117	87.14	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G337070 PE=4 SV=1	[more]
W9SSR1_9ROSA	1.2e-75	64.47	Uncharacterized protein OS=Morus notabilis GN=L484_011783 PE=4 SV=1	[more]
F6I221_VITVI	2.2e-66	60.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0207g00060 PE=4 SV=...	[more]
F6I219_VITVI	2.9e-66	60.00	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0207g00020 PE=4 SV=...	[more]
A0A067JSQ3_JATCU	3.7e-66	57.56	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18075 PE=4 SV=1	[more]

BLAST of CmoCh17G012220.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G31600.1	1.7e-46	44.72	unknown protein	[more]
AT1G05860.1	2.1e-44	45.00	unknown protein	[more]
AT3G53860.1	6.1e-44	47.87	unknown protein	[more]

BLAST of CmoCh17G012220.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659092905\|ref\|XP_008447279.1\|	2.3e-117	87.55	PREDICTED: INO80 complex subunit D-like isoform X1 [Cucumis melo]	[more]
gi\|449443790\|ref\|XP_004139660.1\|	8.7e-117	87.14	PREDICTED: INO80 complex subunit D [Cucumis sativus]	[more]
gi\|703150749\|ref\|XP_010109941.1\|	1.7e-75	64.47	hypothetical protein L484_011783 [Morus notabilis]	[more]
gi\|659092907\|ref\|XP_008447280.1\|	2.9e-72	86.08	PREDICTED: INO80 complex subunit D-like isoform X2 [Cucumis melo]	[more]
gi\|747075310\|ref\|XP_011084684.1\|	2.3e-69	61.70	PREDICTED: INO80 complex subunit D-like [Sesamum indicum]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR025927	Potential_DNA-bd
IPR026316	NSL2

Vocabulary: **Cellular Component**
Term	Definition
GO:0000123	histone acetyltransferase complex

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0000123	histone acetyltransferase complex
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh17G012220	CmoCh17G012220	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh17G012220.1	CmoCh17G012220.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G012220.1.exon.3	CmoCh17G012220.1.exon.3	exon
CmoCh17G012220.1.exon.2	CmoCh17G012220.1.exon.2	exon
CmoCh17G012220.1.exon.1	CmoCh17G012220.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G012220.1.five_prime_UTR.1	CmoCh17G012220.1.five_prime_UTR.1	five_prime_UTR
CmoCh17G012220.1.five_prime_UTR.2	CmoCh17G012220.1.five_prime_UTR.2	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G012220.1.CDS.1	CmoCh17G012220.1.CDS.1	CDS
CmoCh17G012220.1.CDS.2	CmoCh17G012220.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh17G012220.1.three_prime_UTR.1	CmoCh17G012220.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025927	Potential DNA-binding domain	PFAM	PF13891	zf-C3Hc3H	coord: 122..183 score: 3.8
IPR026316	KAT8 regulatory NSL complex subunit 2	PANTHER	PTHR13453	UNCHARACTERIZED	coord: 14..239 score: 2.9