CmoCh16G012630.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh16G012630.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	50S ribosomal protein L28
Location	Cmo_Chr16 : 9006969 .. 9009789 (+)
Sequence length	890

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTATGAACCTCTTTTCTTTCCTTTATTTTTTTCAAAATCTATGGTCGATTCTCTCTGAATTTGGATGCATTTTATTGATTTAATTCCGTGGTTCGAAACCATTAGTCCCTTTCCCAATATGAGCATAGCTTAACGGTTAAAGGATATCATGTTAAGCCCAAGCCTGCCGCTAGCCGATATTGAACTCTTTGAACTTTCCCTTTTGAGCTTCCCCTCAAGGTTTTAAAACGCGTCCACTATGGAGAGGTTTCCACACCCTTGTAAGAAATGTTTCGTTCTCCTCTCCAACCAATGTGGGATCTCATAATCCACCCCCTTGGAGGTTAGCGTCCTTGCTCTAACACACTGCCCAGTGTTTGATTCTGATACCATTTGTAATAGCCTAAGTCCACCTCTAACAAATATTGTCTTCTTTGAGATTTCCCTACTGGGCTTCCCCTCAAGGTTTTAAAATGCATCTACTATGGAGAAGTTTCTACACTCTTGTAAGAAATGTTTCATCCCCCTCTCCAACCAATGTAGGATCTCACAATCCACCTCCTTGGAGGTTAGTGTGACACACCGCCCAGTGTCTGGCTCTGATACCATTTATAATAGCCTAAGCCCACTGCTAACAGATATTGTTCTCTTTGAGATTTCCCTGCTGGGCTTCCTCTCAAGGTTTTAAAACGTGTCTACTAGGGAGAGATTTCCACACCCTTGTAAGGAATGTTTCGTTCCCCTCTCCAACCAAGGTGGGATCTCATAATCCACCCCCTTGGAGGTCAGCGTCCTCACTGACACATCACCCGGTGTCTGGCTCTGATACCATTTGTAATAGTCTAAGCCCACCGCTAGCAGATATTGTCCTCTTTAGGATTTCTCTGTTGGGCTTCCCCTCAAGGTTTTAAAACGCGTCTACTAGGGAGAGGTTTCCACACCCTTATAAGGAATGTTTCGTTCTCCTCTTCAACCAATGTGAGATCTCACACATCAACCTCTACCTTTTTTTTTTTTTCCTTCGAACTAGTTCAAATTTCCACACCCACACCAAAAAAAAAAAAAGAGAGAGAGAGAGAGATCTTTAGTCCCTTTTAATTGCATAGCTAGATTTATTGTTTTTTACAATTGCAAGTGAAGGCGCCATAAATGAATAAATTCATAGCATCAAAGACATTTGGCAGAAAATTCTTGCTGTTACTATTTCAAAACTTTACGTCTTTGTGTTCATGCTTCTGATTTTTTCTTATCTGTTTGTTGCTGCCTTCTTGATGAGTGTTTGGATTTTGGATGCGGGGTTAGCATATGAATCAATTGTTCTGCTAAAATTCTTAACCACACTACTTGATTACGACTTGTAGTTAGAATCAAGTGGAGATGTTGTAATTGCTTTGCTCTGAGGTTTTTATGCCCCACTCCTTTTGTCAATCTATGAACATGTGGAAGAACCCTAAGATAGGGTGATTGGGGGCGTAAAGTCGGGCTTCAGCGTGTGTCTCGCTTCCTAAGCCCAACAGCCCCGACCCTCTGTTTGACAATCCAAGTTCGAGAAACCAACCGGCTCAAACAACATCCTACTATTCAACCCCTCTGCTCACTATTTCGACCCAAGCTTCCTAAACTTGTGCCCCCAAATACAGAACCTGTGAACCCAAATGGTCCATTAGATTTTGGGAAGAGAAAATGAACTTATAGTGGTGTTTCCTTCTGTGTGTGAACGTTATTGGTTTTTGCTTTATGTTTGTAGCCTTATATTTACATGTCAAGGGTATGCCTCTCTTGCTCTTGTATTAAGAAATTCGAGAGCACGATATAATAATTTTGTTTTCTTCCTTTGTTTCGGCCTTATGTCATATAAGGGTTCGGTGCGTTTTACGATTATTTACGATTATTTTGTCATGCTATCAATTTTCAATTTTGGAGTATTAGCCGTTATGTGCTGGTGCTTATAGGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGAATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCGGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGACGGATGTATGGTAGTTCGACCCAACATGATCAGATCGAAGAGGGACAAGCAGACCGCGCTGGATCTAGCGAGGAAGTTGCAGGTTCGGAAGGAGGCTCCCATGGTGATGATGGTCCACAGCAATGTGTTGCCAACGCCTAATTAATCATAGGACACCTTTTTTCCAACTTGGGAATTCTTCAAGCCTTGACTTGTTCCTACCTTTTCCAAGAGTTGTTTACTCTCATCTTCACTGAAATCCTTTGTAGCTTATTTGGTTTAATGTTAACTACTTCAGATAGAAATGAGAATTGTTTTTTGGAAATTGAGATGTGAAATCTTAAAACTTATTGTTCAATAAGATTGGGCTTAATATATGATTTCCCCAT

mRNA sequence

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGAATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCGGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGACGGATGTATGGTAGTTCGACCCAACATGATCAGATCGAAGAGGGACAAGCAGACCGCGCTGGATCTAGCGAGGAAGTTGCAGGTTCGGAAGGAGGCTCCCATGGTGATGATGGTCCACAGCAATGTGTTGCCAACGCCTAATTAATCATAGGACACCTTTTTTCCAACTTGGGAATTCTTCAAGCCTTGACTTGTTCCTACCTTTTCCAAGAGTTGTTTACTCTCATCTTCACTGAAATCCTTTGTAGCTTATTTGGTTTAATGTTAACTACTTCAGATAGAAATGAGAATTGTTTTTTGGAAATTGAGATGTGAAATCTTAAAACTTATTGTTCAATAAGATTGGGCTTAATATATGATTTCCCCAT

Coding sequence (CDS)

ATGGCCTTTAGAGGAAAGGAAATGATGAAGAAGATATTGAAGAAGGTTGGAGAAAACAATCTTGCGCCTGGAGTGAAGGATTCATTGAAGAAATGTATTCCAGACTCCAAAATAGTGATGAATAGGGCTAAGCGCGGTATTTTTGCTGGCCGTCACATCCAATTCGGTAACCGTATCAGTGAAGATGGTGGCAACAAGTCAAGAAGGAACTGGAAACCAAATGTCCAAGAGAAGCGACTTTTCAGTTATATTCTAGACCGCCATATTCGAGTTAAAGTCACCACTCATGCCCTTCGATGCATCGACAAGGCCGGTGGAATTGATGAGTATCTGCTGAAAACTCCATACCACAAAATGGACACTGAAATTGGGCTGTTTTGGAAGGCAAAAATCGAGAAGCTGTACGAAGAACTCGGGCAGATGGAGGTCGTTTTCTTCTCACCGGAGGACGAAGCTAAATTTGAACAGGGCTTTAGAGACCTGAAATTATCCGAGAGGGCAGCACGAAAGGAGGCGAGAAGACGGATGTATGGTAGTTCGACCCAACATGATCAGATCGAAGAGGGACAAGCAGACCGCGCTGGATCTAGCGAGGAAGTTGCAGGTTCGGAAGGAGGCTCCCATGGTGATGATGGTCCACAGCAATGTGTTGCCAACGCCTAA

Homology

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BLAST of CmoCh16G012630.1 vs. Swiss-Prot
Match: RM24_YEAST (54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MRPL24 PE=1 SV=2)

HSP 1 Score: 72.0 bits (175), Expect = 9.1e-12
Identity = 37/88 (42.05%), Postives = 53/88 (60.23%), Query Frame = 1


Query: 30  KKCIPDSKI----VMNRAKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYIL 89
           +K  PD K     +  ++ +G++ G  +QFGN ISE    K+R+ W PNV +K L+S  L
Sbjct: 52  RKKFPDYKYGESNIFKQSNKGLYGGSFVQFGNNISESKA-KTRKKWLPNVVKKGLWSETL 111

Query: 90  DRHIRVKVTTHALRCIDKAGGIDEYLLK 114
           +R I +K+T   L+ I K GGID YL K
Sbjct: 112 NRKISIKMTAKVLKTISKEGGIDNYLTK 138

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BLAST of CmoCh16G012630.1 vs. Swiss-Prot
Match: RL28_MAGMM (50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rpmB PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.0e-10
Identity = 31/71 (43.66%), Postives = 46/71 (64.79%), Query Frame = 1


Query: 43  AKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           A++    G+  Q GN++S     K+RR W PN+Q K L+S  L + ++V ++T ALR +D
Sbjct: 2   ARKRTLGGKAPQAGNKVSHSQ-RKTRRQWMPNIQTKALWSITLGQSVKVTISTSALRSVD 61

Query: 103 KAGGIDEYLLK 114
            AGG+D YLLK
Sbjct: 62  NAGGLDNYLLK 71

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BLAST of CmoCh16G012630.1 vs. Swiss-Prot
Match: RL28_GLUDA (50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rpmB PE=3 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 2.5e-09
Identity = 31/80 (38.75%), Postives = 50/80 (62.50%), Query Frame = 1


Query: 43  AKRGIFAGRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCID 102
           ++R    G+ +  GN +S    NKSRR + PN+QE  L S IL   +R++++T+ +R ++
Sbjct: 2   SRRCQITGKGVLTGNNVSH-ANNKSRRRFLPNLQETSLLSDILGSAVRLRLSTNGIRTVE 61

Query: 103 KAGGIDEYLLKTPYHKMDTE 123
             GG+D +LL TP  K+ TE
Sbjct: 62  HNGGLDAFLLSTPNRKLPTE 80

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BLAST of CmoCh16G012630.1 vs. Swiss-Prot
Match: RL28_RHOCS (50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN=rpmB PE=3 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 2.1e-08
Identity = 33/87 (37.93%), Postives = 52/87 (59.77%), Query Frame = 1


Query: 50  GRHIQFGNRISEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDE 109
           G+ +Q GN +S    NKSRR W PN+QE  L S  L R +R++++T+ +R I+  GG+D 
Sbjct: 9   GKGVQTGNNVSH-ANNKSRRRWLPNLQETSLLSDTLGRMVRLRLSTNGIRTIEHKGGLDA 68

Query: 110 YLLKTPYHKMDTEIGLFWKAKIEKLYE 137
            LL  P  +++ +     K +I+K  E
Sbjct: 69  ALLDIPDARLNQDARRV-KKQIQKAIE 93

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BLAST of CmoCh16G012630.1 vs. Swiss-Prot
Match: RM24_SCHPO (54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl24 PE=3 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 2.7e-08
Identity = 39/107 (36.45%), Postives = 56/107 (52.34%), Query Frame = 1


Query: 8   MMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRISEDGGNKS 67
           M  K+L+K+    L   VK  +    P SK   N     ++ G   + GN      G+K+
Sbjct: 1   MASKLLRKLAYPTLP--VKGKIYD--PFSKFQQN-----LYGGSKTEAGNNKIPKFGHKT 60

Query: 68  RRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKT 115
           RR W PN   K L+S +L+    + VT+  LR IDK GG+DEYL+K+
Sbjct: 61  RRVWIPNGHSKWLYSNVLEEKFHLYVTSRVLRTIDKEGGLDEYLVKS 98

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BLAST of CmoCh16G012630.1 vs. TrEMBL
Match: A0A0A0L1P8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 4.0e-99
Identity = 189/220 (85.91%), Postives = 202/220 (91.82%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVM RA RGI+AGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GLFWK+KIE LYEELG+MEVVFFSPEDE KFEQ F++LKLSERAAR+EARR+MYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TQHDQIEEGQADRAGSSEE-VAGSEGGSHGDDGPQQCVAN 220
            + +QI+EG     GSSEE  A SEGGSHGDD  QQ VAN
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 220

[Close]

BLAST of CmoCh16G012630.1 vs. TrEMBL
Match: A0A0D2PMQ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1)

HSP 1 Score: 330.9 bits (847), Expect = 1.2e-87
Identity = 165/200 (82.50%), Postives = 187/200 (93.50%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKK+LKKVGE NLA GVK+ L+K IPDSK+VMNRAKRG++AGRHIQFGNRIS
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GLFWKAKIEK+YEELGQMEVVFFSPEDEAKFEQGF++LKL+ERAAR++ARR+MYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 181 TQHDQIEEGQA-DRAGSSEE 200
            + ++IE  ++ D  G++ E
Sbjct: 181 GKLEEIENRRSHDGTGNAGE 200

[Close]

BLAST of CmoCh16G012630.1 vs. TrEMBL
Match: V4UM17_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009422mg PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.6e-87
Identity = 165/222 (74.32%), Postives = 194/222 (87.39%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRI 60
           MAFRGKEMMKK+++KVG E NLAPGVK+SLKKC+PDS+IVMNRAKRG+FAG+HIQFGNR+
Sbjct: 1   MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60

Query: 61  SEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RRNWKPNVQEKRLFSYI+DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGS 180
           DTE+GL+WK KIEKLYEELGQ EV FF+PE+EAK EQ F+D+KL++RAAR+E RR+MYG 
Sbjct: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG 180

Query: 181 STQHDQIEEGQADRAGSSEEVAG-SEGGSHGDDGPQQCVANA 221
           S++  QIE+G AD   ++EE A     G   +  P+  VAN+
Sbjct: 181 SSKQKQIEQGSADTQETAEEAAKILSEGIPNEYAPEDLVANS 222

[Close]

BLAST of CmoCh16G012630.1 vs. TrEMBL
Match: A0A067FV36_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039022mg PE=3 SV=1)

HSP 1 Score: 330.5 bits (846), Expect = 1.6e-87
Identity = 165/222 (74.32%), Postives = 194/222 (87.39%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRI 60
           MAFRGKEMMKK+++KVG E NLAPGVK+SLKKC+PDS+IVMNRAKRG+FAG+HIQFGNR+
Sbjct: 1   MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60

Query: 61  SEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RRNWKPNVQEKRLFSYI+DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGS 180
           DTE+GL+WK KIEKLYEELGQ EV FF+PE+EAK EQ F+D+KL++RAAR+E RR+MYG 
Sbjct: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG 180

Query: 181 STQHDQIEEGQADRAGSSEEVAG-SEGGSHGDDGPQQCVANA 221
           S++  QIE+G AD   ++EE A     G   +  P+  VAN+
Sbjct: 181 SSKQKQIEQGSADTQETAEEAAKILSEGIPNEYAPEDLVANS 222

[Close]

BLAST of CmoCh16G012630.1 vs. TrEMBL
Match: A0A059AZQ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01931 PE=3 SV=1)

HSP 1 Score: 327.8 bits (839), Expect = 1.0e-86
Identity = 166/215 (77.21%), Postives = 188/215 (87.44%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKK+LK+VGENNLAPGVK++L+KCIP S+IVM RA RGIFAGRHI+FGN++S
Sbjct: 1   MAFRGKEMMKKVLKRVGENNLAPGVKETLEKCIPKSQIVMGRAHRGIFAGRHIRFGNQVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GL+WK+KIEKLYEELG+MEVVFFSPEDE KFEQGF+ LKL ERAAR++ RR+MYG+S
Sbjct: 121 TEMGLYWKSKIEKLYEELGKMEVVFFSPEDETKFEQGFKQLKLEERAARRDFRRQMYGTS 180

Query: 181 TQHDQIEEGQA-DRAGSSEEVAGSEGGSHGDDGPQ 215
            +     EGQA D+A   E     +G  H DD  Q
Sbjct: 181 GKEKLAGEGQASDQATQEESPRIGDGHWHADDHDQ 215

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BLAST of CmoCh16G012630.1 vs. TAIR10
Match: AT4G31460.1 (AT4G31460.1 Ribosomal L28 family)

HSP 1 Score: 283.9 bits (725), Expect = 8.6e-77
Identity = 141/208 (67.79%), Postives = 167/208 (80.29%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKK++KKVG  N+ P +K+ LK C+PD+K+VM RAKRG++AGRHIQ+GNR+S
Sbjct: 1   MAFRGKEMMKKLVKKVGAENITPELKEKLKACVPDTKVVMGRAKRGLYAGRHIQYGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYI D HI+VKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRCWKPNVQEKRLFSYIFDSHIKVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARR--RMYG 180
           TE+GL+WK K+E  Y ELGQMEV FF+PEDEAK EQGF+DL ++++ AR+EARR  R  G
Sbjct: 121 TEMGLYWKTKVEARYAELGQMEVAFFNPEDEAKLEQGFKDLNIAKKDARREARRTFRKKG 180

Query: 181 SSTQHDQIEEGQADRAGSSEEVAGSEGG 207
              + D  EE   +  G SE     + G
Sbjct: 181 GGNKGD--EEASIEGGGGSESHQEDDNG 206

[Close]

BLAST of CmoCh16G012630.1 vs. NCBI nr
Match: gi|449456779|ref|XP_004146126.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus])

HSP 1 Score: 369.0 bits (946), Expect = 5.7e-99
Identity = 189/220 (85.91%), Postives = 202/220 (91.82%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVM RA RGI+AGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GLFWK+KIE LYEELG+MEVVFFSPEDE KFEQ F++LKLSERAAR+EARR+MYGSS
Sbjct: 121 TELGLFWKSKIETLYEELGKMEVVFFSPEDEVKFEQRFKELKLSERAARREARRQMYGSS 180

Query: 181 TQHDQIEEGQADRAGSSEE-VAGSEGGSHGDDGPQQCVAN 220
            + +QI+EG     GSSEE  A SEGGSHGDD  QQ VAN
Sbjct: 181 AKLNQIKEGGEKGNGSSEEAAASSEGGSHGDDSHQQWVAN 220

[Close]

BLAST of CmoCh16G012630.1 vs. NCBI nr
Match: gi|659095444|ref|XP_008448584.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo])

HSP 1 Score: 359.0 bits (920), Expect = 5.9e-96
Identity = 188/221 (85.07%), Postives = 200/221 (90.50%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKKILKKVGENNLAPGVK+SLKK +PDSKIVM RA RGI+AGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKKILKKVGENNLAPGVKESLKKWVPDSKIVMGRANRGIYAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKSRRKWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYQKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GLFWKAKIE LYEELG+MEVVFFSPEDEAKFEQ F+DLKLSERAARKEARR++YGSS
Sbjct: 121 TELGLFWKAKIETLYEELGKMEVVFFSPEDEAKFEQRFKDLKLSERAARKEARRKIYGSS 180

Query: 181 TQH-DQIEEGQADRAGSSEEVAGSEGGSHG-DDGPQQCVAN 220
           T   +QI+EG  D   SSEE A SEGGSHG DD  QQ VAN
Sbjct: 181 TNKLNQIKEGGEDTNVSSEEAASSEGGSHGDDDSHQQWVAN 221

[Close]

BLAST of CmoCh16G012630.1 vs. NCBI nr
Match: gi|823122027|ref|XP_012469124.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii])

HSP 1 Score: 330.9 bits (847), Expect = 1.7e-87
Identity = 165/200 (82.50%), Postives = 187/200 (93.50%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMKK+LKKVGE NLA GVK+ L+K IPDSK+VMNRAKRG++AGRHIQFGNRIS
Sbjct: 1   MAFRGKEMMKKLLKKVGEKNLAHGVKEQLQKSIPDSKVVMNRAKRGLYAGRHIQFGNRIS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNKSRR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD
Sbjct: 61  EDGGNKSRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GLFWKAKIEK+YEELGQMEVVFFSPEDEAKFEQGF++LKL+ERAAR++ARR+MYG S
Sbjct: 121 TEMGLFWKAKIEKMYEELGQMEVVFFSPEDEAKFEQGFKELKLAERAARRDARRQMYGWS 180

Query: 181 TQHDQIEEGQA-DRAGSSEE 200
            + ++IE  ++ D  G++ E
Sbjct: 181 GKLEEIENRRSHDGTGNAGE 200

[Close]

BLAST of CmoCh16G012630.1 vs. NCBI nr
Match: gi|1009136027|ref|XP_015885311.1| (PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba])

HSP 1 Score: 330.9 bits (847), Expect = 1.7e-87
Identity = 163/199 (81.91%), Postives = 184/199 (92.46%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVGENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRIS 60
           MAFRGKEMMK I+KKVGE N+APGVK+SLKKCIPDSKIVMNRAKRGIFAGRHI+FGNR+S
Sbjct: 1   MAFRGKEMMKNIMKKVGEKNMAPGVKESLKKCIPDSKIVMNRAKRGIFAGRHIRFGNRVS 60

Query: 61  EDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKMD 120
           EDGGNK+RR+WKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPY KMD
Sbjct: 61  EDGGNKTRRSWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYSKMD 120

Query: 121 TEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGSS 180
           TE+GLFWKAKIEKLYEELGQ EVVFFSPEDE KFEQ F++L+L+E+AA+KEAR++M+G S
Sbjct: 121 TEMGLFWKAKIEKLYEELGQKEVVFFSPEDETKFEQEFKELRLNEKAAQKEARKQMFGWS 180

Query: 181 TQHDQIEEGQADRAGSSEE 200
            +  Q+EEG+A    + EE
Sbjct: 181 GKLKQMEEGEAKNEETKEE 199

[Close]

BLAST of CmoCh16G012630.1 vs. NCBI nr
Match: gi|567916350|ref|XP_006450181.1| (hypothetical protein CICLE_v10009422mg [Citrus clementina])

HSP 1 Score: 330.5 bits (846), Expect = 2.3e-87
Identity = 165/222 (74.32%), Postives = 194/222 (87.39%), Query Frame = 1


Query: 1   MAFRGKEMMKKILKKVG-ENNLAPGVKDSLKKCIPDSKIVMNRAKRGIFAGRHIQFGNRI 60
           MAFRGKEMMKK+++KVG E NLAPGVK+SLKKC+PDS+IVMNRAKRG+FAG+HIQFGNR+
Sbjct: 1   MAFRGKEMMKKLVRKVGGEKNLAPGVKESLKKCVPDSRIVMNRAKRGLFAGKHIQFGNRV 60

Query: 61  SEDGGNKSRRNWKPNVQEKRLFSYILDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120
           SEDGGNK+RRNWKPNVQEKRLFSYI+DRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM
Sbjct: 61  SEDGGNKTRRNWKPNVQEKRLFSYIMDRHIRVKVTTHALRCIDKAGGIDEYLLKTPYHKM 120

Query: 121 DTEIGLFWKAKIEKLYEELGQMEVVFFSPEDEAKFEQGFRDLKLSERAARKEARRRMYGS 180
           DTE+GL+WK KIEKLYEELGQ EV FF+PE+EAK EQ F+D+KL++RAAR+E RR+MYG 
Sbjct: 121 DTEMGLYWKTKIEKLYEELGQTEVAFFTPEEEAKLEQDFKDMKLAQRAARRELRRQMYGG 180

Query: 181 STQHDQIEEGQADRAGSSEEVAG-SEGGSHGDDGPQQCVANA 221
           S++  QIE+G AD   ++EE A     G   +  P+  VAN+
Sbjct: 181 SSKQKQIEQGSADTQETAEEAAKILSEGIPNEYAPEDLVANS 222

The following BLAST results are available for this feature:

BLAST of CmoCh16G012630.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RM24_YEAST	9.1e-12	42.05	54S ribosomal protein L24, mitochondrial OS=Saccharomyces cerevisiae (strain ATC...	[more]
RL28_MAGMM	5.0e-10	43.66	50S ribosomal protein L28 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 1...	[more]
RL28_GLUDA	2.5e-09	38.75	50S ribosomal protein L28 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037...	[more]
RL28_RHOCS	2.1e-08	37.93	50S ribosomal protein L28 OS=Rhodospirillum centenum (strain ATCC 51521 / SW) GN...	[more]
RM24_SCHPO	2.7e-08	36.45	54S ribosomal protein L24, mitochondrial OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of CmoCh16G012630.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L1P8_CUCSA	4.0e-99	85.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G005030 PE=3 SV=1	[more]
A0A0D2PMQ4_GOSRA	1.2e-87	82.50	Uncharacterized protein OS=Gossypium raimondii GN=B456_001G069100 PE=3 SV=1	[more]
V4UM17_9ROSI	1.6e-87	74.32	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10009422mg PE=3 SV=1	[more]
A0A067FV36_CITSI	1.6e-87	74.32	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g039022mg PE=3 SV=1	[more]
A0A059AZQ3_EUCGR	1.0e-86	77.21	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H01931 PE=3 SV=1	[more]

BLAST of CmoCh16G012630.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G31460.1	8.6e-77	67.79	Ribosomal L28 family	[more]

BLAST of CmoCh16G012630.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456779\|ref\|XP_004146126.1\|	5.7e-99	85.91	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis sativus]	[more]
gi\|659095444\|ref\|XP_008448584.1\|	5.9e-96	85.07	PREDICTED: 54S ribosomal protein L24, mitochondrial [Cucumis melo]	[more]
gi\|823122027\|ref\|XP_012469124.1\|	1.7e-87	82.50	PREDICTED: 54S ribosomal protein L24, mitochondrial [Gossypium raimondii]	[more]
gi\|1009136027\|ref\|XP_015885311.1\|	1.7e-87	81.91	PREDICTED: 54S ribosomal protein L24, mitochondrial [Ziziphus jujuba]	[more]
gi\|567916350\|ref\|XP_006450181.1\|	2.3e-87	74.32	hypothetical protein CICLE_v10009422mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001383	Ribosomal_L28
IPR026569	Ribo_L28/L24

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005622	intracellular
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh16G012630	CmoCh16G012630	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh16G012630.1	CmoCh16G012630.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G012630.1.exon.2	CmoCh16G012630.1.exon.2	exon
CmoCh16G012630.1.exon.1	CmoCh16G012630.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G012630.1.CDS.1	CmoCh16G012630.1.CDS.1	CDS
CmoCh16G012630.1.CDS.2	CmoCh16G012630.1.CDS.2	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh16G012630.1.three_prime_UTR.1	CmoCh16G012630.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001383	Ribosomal protein L28	HAMAP	MF_00373	Ribosomal_L28	coord: 42..110 score: 14
IPR026569	Ribosomal protein L28/L24	PANTHER	PTHR13528	39S RIBOSOMAL PROTEIN L28, MITOCHONDRIAL	coord: 23..177 score: 6.3
IPR026569	Ribosomal protein L28/L24	PFAM	PF00830	Ribosomal_L28	coord: 47..103 score: 9.9
None	No IPR available	GENE3D	G3DSA:2.30.170.40		coord: 43..118 score: 2.6
None	No IPR available	unknown	SSF143800	L28p-like	coord: 43..119 score: 3.92