CmoCh14G005700.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.GGATCTATATACCAACCTCTTCTTTAATCTTTATAAGCATACTCCTCAGTCATGGATGCACACACTGAAATACAGAGCTATGCAGGTTCTGACAACAAGGGTCGGCGGCGTAGGGCTGCTGGTGGCTGCGGCGGTGGTTATGCTGACGGCAATGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTGGCAAGATGGGTTGGACGACCAATGTGAACTACACAATCTGGGCTGAGGGAAAACACTTCTATTACGATGACTGGCTCTGTAAGCACTTCAATTTATAGATCTGATGCGGATTTGTGTAGCTAATGAGTTGGTTTGTGGGTAATTTGGCGGTTGTTTGTGTTAGTTTTTGTGTACGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAAACAGAGTACGAGAATTGCAATTCCGATCAGCCACTCCATAATTTCACCACCGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCAGACCTTATTACTTCATTAGCGGTAAAGGGTTTTGCTATGGAGGCATGAAGCTCGCTATCCATGTCCGGCACCTGCCTCCGCCGCCCTCGGCCTCCCCCTTCAACGCTAAGAGCAGTGCTCTAAGATCTTCTTACATCGGCCATACCCCATTCGTCTTGACCGCTGTTTTCGCCATCGCCGCTCTCCGGGAAGCTTTCCGCCGATTCTGGTAGAGACCACTCTTACTGAGTTCACATTCAACTTACTACACTTTTGTCTTGCCAATTTGTG GGATCTATATACCAACCTCTTCTTTAATCTTTATAAGCATACTCCTCAGTCATGGATGCACACACTGAAATACAGAGCTATGCAGGTTCTGACAACAAGGGTCGGCGGCGTAGGGCTGCTGGTGGCTGCGGCGGTGGTTATGCTGACGGCAATGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTGGCAAGATGGGTTGGACGACCAATGTGAACTACACAATCTGGGCTGAGGGAAAACACTTCTATTACGATGACTGGCTCTTTTTTGTGTACGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAAACAGAGTACGAGAATTGCAATTCCGATCAGCCACTCCATAATTTCACCACCGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCAGACCTTATTACTTCATTAGCGGTAAAGGGTTTTGCTATGGAGGCATGAAGCTCGCTATCCATGTCCGGCACCTGCCTCCGCCGCCCTCGGCCTCCCCCTTCAACGCTAAGAGCAGTGCTCTAAGATCTTCTTACATCGGCCATACCCCATTCGTCTTGACCGCTGTTTTCGCCATCGCCGCTCTCCGGGAAGCTTTCCGCCGATTCTGGTAGAGACCACTCTTACTGAGTTCACATTCAACTTACTACACTTTTGTCTTGCCAATTTGTG ATGCACACACTGAAATACAGAGCTATGCAGGTTCTGACAACAAGGGTCGGCGGCGTAGGGCTGCTGGTGGCTGCGGCGGTGGTTATGCTGACGGCAATGCCGGAAGTTTCGGCGACACGGTGGACTGTCGGTGGCAAGATGGGTTGGACGACCAATGTGAACTACACAATCTGGGCTGAGGGAAAACACTTCTATTACGATGACTGGCTCTTTTTTGTGTACGACAGGAACCAAATGAATGTGTTGGAGGTGAACAAAACAGAGTACGAGAATTGCAATTCCGATCAGCCACTCCATAATTTCACCACCGGAGCTGGAAGAGATGTGGTTCATTTGAATGTCACCAGACCTTATTACTTCATTAGCGGTAAAGGGTTTTGCTATGGAGGCATGAAGCTCGCTATCCATGTCCGGCACCTGCCTCCGCCGCCCTCGGCCTCCCCCTTCAACGCTAAGAGCAGTGCTCTAAGATCTTCTTACATCGGCCATACCCCATTCGTCTTGACCGCTGTTTTCGCCATCGCCGCTCTCCGGGAAGCTTTCCGCCGATTCTGGTAG
BLAST of CmoCh14G005700.1 vs. Swiss-Prot
Match: LAML_ARATH (Lamin-like protein OS=Arabidopsis thaliana GN=At5g15350 PE=1 SV=1) HSP 1 Score: 174.5 bits (441), Expect = 1.1e-42 Identity = 83/164 (50.61%), Postives = 110/164 (67.07%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. Swiss-Prot
Match: BCB3_ARATH (Uclacyanin-3 OS=Arabidopsis thaliana GN=UCC3 PE=2 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 4.0e-13 Identity = 55/149 (36.91%), Postives = 78/149 (52.35%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. Swiss-Prot
Match: ENL2_ARATH (Early nodulin-like protein 2 OS=Arabidopsis thaliana GN=At4g27520 PE=1 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 4.2e-10 Identity = 44/138 (31.88%), Postives = 68/138 (49.28%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. Swiss-Prot
Match: MAVI_CUCPE (Mavicyanin OS=Cucurbita pepo PE=1 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 5.5e-10 Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. Swiss-Prot
Match: BCP_PEA (Blue copper protein OS=Pisum sativum PE=2 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 7.1e-10 Identity = 47/139 (33.81%), Postives = 64/139 (46.04%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. TrEMBL
Match: A0A0A0LC11_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824220 PE=4 SV=1) HSP 1 Score: 310.5 bits (794), Expect = 1.4e-81 Identity = 149/179 (83.24%), Postives = 159/179 (88.83%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. TrEMBL
Match: W9QQU4_9ROSA (Lamin-like protein OS=Morus notabilis GN=L484_020958 PE=4 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 4.3e-62 Identity = 124/165 (75.15%), Postives = 134/165 (81.21%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. TrEMBL
Match: A9PAA9_POPTR (Plastocyanin-like domain-containing family protein OS=Populus trichocarpa GN=POPTR_0017s12460g PE=2 SV=1) HSP 1 Score: 243.0 bits (619), Expect = 2.8e-61 Identity = 119/171 (69.59%), Postives = 138/171 (80.70%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. TrEMBL
Match: V4SAD5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012929mg PE=4 SV=1) HSP 1 Score: 238.0 bits (606), Expect = 8.9e-60 Identity = 119/170 (70.00%), Postives = 131/170 (77.06%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. TrEMBL
Match: A0A067JTG9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19891 PE=4 SV=1) HSP 1 Score: 236.1 bits (601), Expect = 3.4e-59 Identity = 114/163 (69.94%), Postives = 130/163 (79.75%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. TAIR10
Match: AT5G15350.1 (AT5G15350.1 early nodulin-like protein 17) HSP 1 Score: 174.5 bits (441), Expect = 6.1e-44 Identity = 83/164 (50.61%), Postives = 110/164 (67.07%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. TAIR10
Match: AT3G01070.1 (AT3G01070.1 early nodulin-like protein 16) HSP 1 Score: 170.2 bits (430), Expect = 1.2e-42 Identity = 91/165 (55.15%), Postives = 113/165 (68.48%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. TAIR10
Match: AT4G12880.1 (AT4G12880.1 early nodulin-like protein 19) HSP 1 Score: 145.2 bits (365), Expect = 4.0e-35 Identity = 65/126 (51.59%), Postives = 88/126 (69.84%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. TAIR10
Match: AT2G27035.1 (AT2G27035.1 early nodulin-like protein 20) HSP 1 Score: 110.5 bits (275), Expect = 1.1e-24 Identity = 65/162 (40.12%), Postives = 93/162 (57.41%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. TAIR10
Match: AT3G60280.1 (AT3G60280.1 uclacyanin 3) HSP 1 Score: 76.3 bits (186), Expect = 2.3e-14 Identity = 55/149 (36.91%), Postives = 78/149 (52.35%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. NCBI nr
Match: gi|659085323|ref|XP_008443359.1| (PREDICTED: lamin-like protein [Cucumis melo]) HSP 1 Score: 314.7 bits (805), Expect = 1.1e-82 Identity = 152/180 (84.44%), Postives = 161/180 (89.44%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. NCBI nr
Match: gi|449437808|ref|XP_004136682.1| (PREDICTED: lamin-like protein [Cucumis sativus]) HSP 1 Score: 310.5 bits (794), Expect = 2.0e-81 Identity = 149/179 (83.24%), Postives = 159/179 (88.83%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. NCBI nr
Match: gi|703073526|ref|XP_010089568.1| (Lamin-like protein [Morus notabilis]) HSP 1 Score: 245.7 bits (626), Expect = 6.2e-62 Identity = 124/165 (75.15%), Postives = 134/165 (81.21%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. NCBI nr
Match: gi|224141443|ref|XP_002324082.1| (plastocyanin-like domain-containing family protein [Populus trichocarpa]) HSP 1 Score: 243.0 bits (619), Expect = 4.0e-61 Identity = 119/171 (69.59%), Postives = 138/171 (80.70%), Query Frame = 1
BLAST of CmoCh14G005700.1 vs. NCBI nr
Match: gi|568858355|ref|XP_006482719.1| (PREDICTED: lamin-like protein [Citrus sinensis]) HSP 1 Score: 239.2 bits (609), Expect = 5.8e-60 Identity = 120/170 (70.59%), Postives = 131/170 (77.06%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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