CmoCh14G004160.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G004160.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	WRC protein
Location	Cmo_Chr14 : 1976921 .. 1979030 (+)
Sequence length	1360

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCTCTTCCACCCTGGCATCGCTCTCCCTCTCCGTACTCCCAGTCCCCACCTGCCTCTCCGATTCCTACCGGCTACCTGCTCTTCCGGTTGCCCTCCCCACCCCGGTGCAACTCATTAAGGCCTTACCCACACAAATTCCATTACCAAAAAATCAAAGATAAGACCATACACACACACACACTACACTTTTCCCTTCTTCTTCTTCCTCCTTTTTCTGCACAAATAATCCGACAATTTGGGTTGTCCGCCGGCGACATGAGGATCAGAAAACGGCAGGTCCCATTACCCTTCTCCTCTCTCTCTCCTCTCCCTCTCTCAGATCCCCTCCTCCGCCGCACTCCGCCGGTGCAACTCCATCTCCAACTCCCCTCCTCCGATCCTCCAAATCTACACCCCTACGCCTGCGATTCCGCCGCCTACCACACTAATAATGCCTTGGTCAGTAATCAAATACCCCCCTCCCTCTTTTTTCTTCACTCGATTTGGGATTTTTCTGTTTTCTTTTGGGCGGCGCGTTCTATTGAAGAATGGTCCCTGAAATCGCTCATGGGGTTGTCGGATTTTTCGTGTGCAGGGGAAGAAGGATCAGCTAGAACAACACGATTCCAGGTAACGATTCAAAGCCCCCATTTCTGTTCTTCCTCCAAATAAAAAAACCCAAAATACCGCTTAATCCATTTACTTTTATGTTTAGGAGAGTAAAAAAGGACAGCGGAAATCACTGTTCTGATGTTTTTTTTTTTTTTAATATGATTTCGTTGGCTTTTGCCTGTGAAAACATCTGGGGCTCTGCATGTTCTTCGCTGTTCCACAGCTCCTGTCTTCTTCTGAAATCATGGCTTACAGTAATTACACATTTTCTTGTGGGTTTCCTTCTTTTAATGTTACCCATGTGAATTTCATAGCTATGTGTATCTCTGAATTATTTTAGGGAAACGACTGTGTTTGGTGCAGAAGCAAGCAATGGTGTTCTTCCACTGTCCTCCTCTTCTCCTCAAGGTTCACCCCTTTTGTTTTTTTCATATCACTTTCTGGGCTGCTTGGTTTTCCTTTGCTGTACTGTAATGATTTGATTATGTTTGTGTGAATAAATGTGCACCATGATCATGAGTTTTCACTAGTGATTTGATGGGAAGTCCAATCTTCAAATTATGTGAAAATTATATGAAATAATTAGTGTTTTATCTACTAAAAATTACGATATGATACTCAATTTGTGTAATGTTGTGGTCGGTTTTTGTTTTCGAGTTTCGATTCAGCTTAGATTTTGTTTATTTATGTTTGATTGTAGTGGGTGATGGGCAATGGTGCGAGAGGGATAAGGATTTTCCATTAAAGAAGAGAAGAGGGAGCTTTGAGAGGCAAAGTGACGATGATCAGAACAATGCCGATGATCAAACCACCACCGCCGCCGCCGCCGCCGCCATGGAGTCACTGCCAGATCATAAGAAGACAACGAAGAACAAGAAACAACCCAAACTGGGTTTGAATCTCGCCGGAAAAAAGAGGTCGAGAGGCGGCGCGTTAATGGAGGGATCCCGGTGCAGCCGCGTCAATGGAAGAGGATGGCGATGTTGCCAACAAACTCTCGTCGGTTATTCTCTCTGTGAACATCACTTGGGAAAAGGCCGTCTCCGCAGCATGAACAACGTACGCAGCCGCTCTTTGGCCGCCGCCGCCGCCACACTGAAAAACATTGTCACCGTCGATAAAGACGAGAAAAAGCCACCTCCATGCCCACCACCGCCGTCGCCATCATTGACGTTAGCCAGCAAGAAGAGAACGAAACTGGGTTTGGTGAAAGCTCGGTCAATAAGCAGCTTACTCGGCCAACCAGACGGCATGGCGGCAATACCGCCGCCTCCGCCCCCGTCTCAGTCAACATTGCCTAACGACAACATTAACCAGTAGAAAACTATAATTTATTACAAAGTGACCCCTCATCTTTTAAGTAATTTAAAATTTTCAATTAGGCTGTTTTGTAAAAAGAAAAAAAAAAAAAAACAATATTTATTGTCTTATTAATATATTTGAACATTATTAAAATTCATCTATTTCATAAATTAAATTTATTTCACGACTTCAAATAAATATATACTAAAAAATAAA

mRNA sequence

CTCTCTTCCACCCTGGCATCGCTCTCCCTCTCCGTACTCCCAGTCCCCACCTGCCTCTCCGATTCCTACCGGCTACCTGCTCTTCCGGTTGCCCTCCCCACCCCGGTGCAACTCATTAAGGCCTTACCCACACAAATTCCATTACCAAAAAATCAAAGATAAGACCATACACACACACACACTACACTTTTCCCTTCTTCTTCTTCCTCCTTTTTCTGCACAAATAATCCGACAATTTGGGTTGTCCGCCGGCGACATGAGGATCAGAAAACGGCAGGTCCCATTACCCTTCTCCTCTCTCTCTCCTCTCCCTCTCTCAGATCCCCTCCTCCGCCGCACTCCGCCGGTGCAACTCCATCTCCAACTCCCCTCCTCCGATCCTCCAAATCTACACCCCTACGCCTGCGATTCCGCCGCCTACCACACTAATAATGCCTTGGGGAAGAAGGATCAGCTAGAACAACACGATTCCAGGGAAACGACTGTGTTTGGTGCAGAAGCAAGCAATGGTGTTCTTCCACTGTCCTCCTCTTCTCCTCAAGTGGGTGATGGGCAATGGTGCGAGAGGGATAAGGATTTTCCATTAAAGAAGAGAAGAGGGAGCTTTGAGAGGCAAAGTGACGATGATCAGAACAATGCCGATGATCAAACCACCACCGCCGCCGCCGCCGCCGCCATGGAGTCACTGCCAGATCATAAGAAGACAACGAAGAACAAGAAACAACCCAAACTGGGTTTGAATCTCGCCGGAAAAAAGAGGTCGAGAGGCGGCGCGTTAATGGAGGGATCCCGGTGCAGCCGCGTCAATGGAAGAGGATGGCGATGTTGCCAACAAACTCTCGTCGGTTATTCTCTCTGTGAACATCACTTGGGAAAAGGCCGTCTCCGCAGCATGAACAACGTACGCAGCCGCTCTTTGGCCGCCGCCGCCGCCACACTGAAAAACATTGTCACCGTCGATAAAGACGAGAAAAAGCCACCTCCATGCCCACCACCGCCGTCGCCATCATTGACGTTAGCCAGCAAGAAGAGAACGAAACTGGGTTTGGTGAAAGCTCGGTCAATAAGCAGCTTACTCGGCCAACCAGACGGCATGGCGGCAATACCGCCGCCTCCGCCCCCGTCTCAGTCAACATTGCCTAACGACAACATTAACCAGTAGAAAACTATAATTTATTACAAAGTGACCCCTCATCTTTTAAGTAATTTAAAATTTTCAATTAGGCTGTTTTGTAAAAAGAAAAAAAAAAAAAAACAATATTTATTGTCTTATTAATATATTTGAACATTATTAAAATTCATCTATTTCATAAATTAAATTTATTTCACGACTTCAAATAAATATATACTAAAAAATAAA

Coding sequence (CDS)

ATGAGGATCAGAAAACGGCAGGTCCCATTACCCTTCTCCTCTCTCTCTCCTCTCCCTCTCTCAGATCCCCTCCTCCGCCGCACTCCGCCGGTGCAACTCCATCTCCAACTCCCCTCCTCCGATCCTCCAAATCTACACCCCTACGCCTGCGATTCCGCCGCCTACCACACTAATAATGCCTTGGGGAAGAAGGATCAGCTAGAACAACACGATTCCAGGGAAACGACTGTGTTTGGTGCAGAAGCAAGCAATGGTGTTCTTCCACTGTCCTCCTCTTCTCCTCAAGTGGGTGATGGGCAATGGTGCGAGAGGGATAAGGATTTTCCATTAAAGAAGAGAAGAGGGAGCTTTGAGAGGCAAAGTGACGATGATCAGAACAATGCCGATGATCAAACCACCACCGCCGCCGCCGCCGCCGCCATGGAGTCACTGCCAGATCATAAGAAGACAACGAAGAACAAGAAACAACCCAAACTGGGTTTGAATCTCGCCGGAAAAAAGAGGTCGAGAGGCGGCGCGTTAATGGAGGGATCCCGGTGCAGCCGCGTCAATGGAAGAGGATGGCGATGTTGCCAACAAACTCTCGTCGGTTATTCTCTCTGTGAACATCACTTGGGAAAAGGCCGTCTCCGCAGCATGAACAACGTACGCAGCCGCTCTTTGGCCGCCGCCGCCGCCACACTGAAAAACATTGTCACCGTCGATAAAGACGAGAAAAAGCCACCTCCATGCCCACCACCGCCGTCGCCATCATTGACGTTAGCCAGCAAGAAGAGAACGAAACTGGGTTTGGTGAAAGCTCGGTCAATAAGCAGCTTACTCGGCCAACCAGACGGCATGGCGGCAATACCGCCGCCTCCGCCCCCGTCTCAGTCAACATTGCCTAACGACAACATTAACCAGTAG

Homology

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BLAST of CmoCh14G004160.1 vs. TrEMBL
Match: A0A0A0LGX5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G806230 PE=4 SV=1)

HSP 1 Score: 288.5 bits (737), Expect = 9.4e-75
Identity = 188/317 (59.31%), Postives = 219/317 (69.09%), Query Frame = 1


Query: 1   MRIRKRQVPLP-FSSLSPLPLSDPLLRRTPPVQLHLQLPSSDPPNLHPYACDSAAYHTNN 60
           MRIRKRQ+PLP FSSLS            PPVQL   LPSSDPP ++P          NN
Sbjct: 1   MRIRKRQLPLPTFSSLSD-----------PPVQL--PLPSSDPP-INPL--------DNN 60

Query: 61  ALGKKDQLEQHDSRETTVFGAEA-SNGVLPLSSSSPQVGDGQWCERDKDFPLKKRRGSFE 120
              K+  L+Q+DSRET + GAE  +N +LP SSSS   G G+WCE++K FPLKKRRGSFE
Sbjct: 61  Q--KQKLLQQYDSRETILIGAETINNALLPHSSSSSSQGGGRWCEKEKAFPLKKRRGSFE 120

Query: 121 RQSDDDQNN----ADDQTTTAAA-AAAMESLPDHKKTTKNKKQPKLGLN-LAGKKRSRGG 180
           R SD+D ++    +D Q  T       M     +KK T ++KQ K+GL+ + GKKRSRGG
Sbjct: 121 RSSDEDNDDHSKDSDHQVATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGG 180

Query: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKNIV 240
           ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVR+RSL   AAT KNIV
Sbjct: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL--VAATPKNIV 240

Query: 241 TVDKDEKKPPPCP--------PPPSPSLTLASKKRTKLGLVKARSISSLLGQPDGMAAIP 300
            V+KDEKKP P P        PPP  S +L SKKR KLG+VKARS+SSLLGQP+ MA   
Sbjct: 241 VVEKDEKKPSPSPPPSPFPSSPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVAT 289

Query: 301 PPPPPSQSTLPNDNINQ 302
           P  PP  STL +DNI++
Sbjct: 301 PLSPP--STLHDDNIDK 289

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BLAST of CmoCh14G004160.1 vs. TrEMBL
Match: A0A067JP86_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25554 PE=4 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 8.0e-50
Identity = 143/310 (46.13%), Postives = 183/310 (59.03%), Query Frame = 1


Query: 1   MRIRKRQVPLPFSSLSPLPLSDPLLRRTPPVQLHLQ-------LPSSDPPNL----HPYA 60
           MRIRKR+VP P SSLSP+PLSDP LRR+P VQL L+        PSS  P +    +PY 
Sbjct: 1   MRIRKRKVPFPLSSLSPVPLSDPNLRRSPVVQLQLEDDTAAYFNPSSSNPPIGDGNNPYQ 60

Query: 61  CD--SAAYHTNNALGKKDQLEQHDSRETTVFGAEASNG-VLPLSSSSPQVGDGQWCERDK 120
            +    A  +    G +D    + +R  ++F AE     V   S+SS Q  DG+WCE +K
Sbjct: 61  EEVKKEAKDSPKDEGGRDGETSNYTRRGSLFNAETETEMVFQESNSSHQ--DGRWCEGEK 120

Query: 121 DFPLKKRRGSFERQSDDDQNNADDQTTTAAAAAAMESLPDHKKTTKN---KKQPKLGLNL 180
            FPLKKRRG+ ER   +++       T       ++   D+    +    +K+ K     
Sbjct: 121 AFPLKKRRGNLERSKQEEETKEKKMKTKMNKKCQLQHNSDNNNNNQEIEEEKEIKESNTS 180

Query: 181 AGKKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAA 240
             KK+ RGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSM +VR+RS+A+
Sbjct: 181 TSKKKVRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMTSVRNRSMAS 240

Query: 241 AAATL-----------------KNIVTVDKDEKKPPPCPPPPSPSLTLASKKRTKLGLVK 277
           +AA                   K++V +D ++K      P     LT+ SKK+ KLG+VK
Sbjct: 241 SAAKKASSCALSPLPPQEDKERKDMVELDGEDKGNDDKKP-----LTI-SKKKMKLGVVK 300

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BLAST of CmoCh14G004160.1 vs. TrEMBL
Match: A0A061EXI8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_024932 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 1.4e-49
Identity = 160/372 (43.01%), Postives = 191/372 (51.34%), Query Frame = 1


Query: 1   MRIRKRQVPLPFSSLSPLPL-SDPLLRRTPPVQLHLQL-------------PSSDPPN-- 60
           MRIRKRQVPLPFSS+SP+PL SDP   R P VQL LQ              PSSD PN  
Sbjct: 1   MRIRKRQVPLPFSSISPVPLPSDPNFNRPPVVQLPLQQQQPPLPTPRFDLRPSSDRPNHP 60

Query: 61  ---LHPYACDSAAY----------HTNNALGKKDQ----LEQ----------------HD 120
              L     DS+A+          + NN   KK +    L+Q                +D
Sbjct: 61  IGQLQTQGRDSSAFPAGTTTHGEDNNNNKKPKKKEDYLVLKQGGGGEEEERGGEGEKSND 120

Query: 121 SRETTVFGAEASNGVLPLSSSSPQVGDGQWCERDKDFPLKKRRGSFERQS--DDDQ---- 180
           +RE +V GAE  +G  P SSSS Q   G+W E +K FPLKKRRGSFER+   DDD     
Sbjct: 121 TREKSVLGAELGSGFPPQSSSSHQAL-GRWGEGEKAFPLKKRRGSFERRGNYDDDTIMEK 180

Query: 181 ------NNADDQTTTAAAAAAMESLPDHKKTTKNKKQPKLGLNL---AGKKRSRGGALME 240
                  N +   T        +   +H++  K  K     ++    + KKR RGGALME
Sbjct: 181 DNNKKVTNINKMKTKMNKKFVQQQNDNHEQEEKEIKDSTASVDSNPSSAKKRGRGGALME 240

Query: 241 GSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKNIVTVDK 284
           GSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSM +VRSRSLA + A  K     + 
Sbjct: 241 GSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMTSVRSRSLAGSNAAKKEEQQPNN 300

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BLAST of CmoCh14G004160.1 vs. TrEMBL
Match: A0A0D2QCR9_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G156300 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 2.2e-47
Identity = 144/319 (45.14%), Postives = 166/319 (52.04%), Query Frame = 1


Query: 1   MRIRKRQVPLPFSSLSPLPL-SDPLLRRTPPVQLHLQLPSSDPPNLHP----------YA 60
           MRIRKRQ  LPFSS+SP PL SDP   R+P VQ H  L    PP  HP            
Sbjct: 1   MRIRKRQAQLPFSSISPPPLSSDPNFNRSPVVQ-HPPLRKPPPPADHPNHPIRRQKPTQG 60

Query: 61  CDSAAY------HTNNALGKKD-----------------QLEQHDSRETTVFGAEASNGV 120
            DS+A+      H    L KK+                 +   + +R+   F  E   G 
Sbjct: 61  RDSSAFPETTTSHGGEELKKKEDYLVLKQEGEEERGENGEKSNYTARKKNDFDEELGTGS 120

Query: 121 LPLSSSSPQVGDGQWCERDKDFPLKKRRGSFER--QSDDDQNNADDQTTTAAAAAAMESL 180
           L L       G G+WCE +K FPLKKRRGSFER  Q  DD  N                 
Sbjct: 121 LSLQ------GVGKWCEGEKAFPLKKRRGSFERIMQKKDDIIN----------------- 180

Query: 181 PDHKKTTKNKKQPKLGLNLAGKKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHH 240
            DH                +GKK+ R GALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHH
Sbjct: 181 -DHNYN-------------SGKKKGRNGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHH 240

Query: 241 LGKGRLRSMNNVRSRSLAAAAATLKNIVTVDKDEKKPPPCPPPPSPSLTLASKKRTKLGL 284
           LGKGRLRS+ +VRSRSL +      N     K E++PP       P +T   KKR KLG+
Sbjct: 241 LGKGRLRSITSVRSRSLGS-----NNNNNAGKKEEQPPLSKQEEKPLMTTTIKKRVKLGM 276

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BLAST of CmoCh14G004160.1 vs. TrEMBL
Match: A0A067FU33_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019760mg PE=4 SV=1)

HSP 1 Score: 197.2 bits (500), Expect = 2.8e-47
Identity = 145/332 (43.67%), Postives = 182/332 (54.82%), Query Frame = 1


Query: 1   MRIRKRQVPLPFSSLSPLPLS-DPLLRRTPPVQLHLQLPSSDP----PNLHPYACDSAAY 60
           MRIRKRQVPLP SSLSP+P+S DP    +P VQLH   P  DP    P      C   + 
Sbjct: 1   MRIRKRQVPLPLSSLSPIPISSDPHYNGSPVVQLH---PGHDPHQNLPQQADAVCSQPSD 60

Query: 61  HTNNALGKKDQLEQ----------------HDSRETTVFGAE-ASNGVLPLSSSSPQVGD 120
           H+N  +G  + L+Q                 DSR+ ++ GAE A+ GVL   SSS  V  
Sbjct: 61  HSNQPIGSGNTLDQMDKDCLVLEDENGEKSDDSRKNSILGAEIAAAGVLSQLSSSHHVV- 120

Query: 121 GQWCERDKDFPLKKRRGSFERQSDDDQ--------NN----ADDQTTTAAAAAAMESLPD 180
           G+W E +K FPLKKR  S  R++D+D         NN     +DQ          E    
Sbjct: 121 GRWREGEKAFPLKKR--SSRRENDEDNFKKMKTKLNNKKFAGNDQQEQGEQEEEEEQEEQ 180

Query: 181 HKKTTKNKKQPKLGLNLAGKKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLG 240
            ++    +       +   K+ ++GGA+MEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLG
Sbjct: 181 EEREVTKESVDNNSTSSKNKRGTKGGAIMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLG 240

Query: 241 KGRLRSMNNVRSRS--LAAAAATLKNIVTVDKDEKKPPPCPPPPSPS------------- 279
           KGRLRSMN+VRSRS  L ++A++ K+  T      KP     P S +             
Sbjct: 241 KGRLRSMNSVRSRSSNLGSSASSNKSTATTAAATNKPAISSSPSSTTLQESKMKQELVSD 300

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BLAST of CmoCh14G004160.1 vs. TAIR10
Match: AT2G42040.1 (AT2G42040.1 WRC (InterPro:IPR014977))

HSP 1 Score: 131.0 bits (328), Expect = 1.3e-30
Identity = 109/294 (37.07%), Postives = 139/294 (47.28%), Query Frame = 1


Query: 1   MRIRKRQVPLPFSSLSPLPLSDPLLRRTPPVQLH---------------LQLPSSDPPNL 60
           MRIRKRQVPLP SSL P+PLSD    R+P                    LQL    P  +
Sbjct: 1   MRIRKRQVPLPLSSLLPVPLSDLYFNRSPTATARYFRGGYKDGGDDFGSLQLSLPPPSQI 60

Query: 61  HPYACDSAAYHTNNALGKKDQLE--QHDSRETTVFGAEASNGVLPLSSSSPQVGDGQWCE 120
                 S      + + KK++++    D+ +  V     ++G   ++     V   Q  E
Sbjct: 61  ------SDRLIQRDLIKKKEEVKALDDDNGDVDVKSRTDASGSKNVNPRGESVSSIQVVE 120

Query: 121 R-DKDFPLKKRRGSFERQSDDDQNNADDQTTTAAAAAAMESLPDHKKTTKNKKQPKLGLN 180
           + +K   L+KRRG    +  +D+   +D+  +              +  K KK       
Sbjct: 121 KNEKVVSLRKRRGFINFEDYEDE---EDEEASGGGG----------RINKGKK------- 180

Query: 181 LAGKKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLA 240
              K +  GG L EGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGR+RSMN    +S  
Sbjct: 181 ---KAKKSGGGLEEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRVRSMN----KSGG 240

Query: 241 AAAATLKNIVTVDKDEKKPPPCPPPPSPSLTLASKKRTKLGLVKARSISSLLGQ 277
                 K +V   K                    KKR KLG+VKARSISSLLGQ
Sbjct: 241 GRGGEKKAVVVEVK--------------------KKRVKLGMVKARSISSLLGQ 241

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BLAST of CmoCh14G004160.1 vs. NCBI nr
Match: gi|659084724|ref|XP_008443038.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X2 [Cucumis melo])

HSP 1 Score: 294.3 bits (752), Expect = 2.5e-76
Identity = 191/314 (60.83%), Postives = 222/314 (70.70%), Query Frame = 1


Query: 1   MRIRKRQVPLP-FSSLSPLPLSDPLLRRTPPVQLHL--QLPSSDPPNLHPYACDSAAYHT 60
           MRIRKRQ+PLP FSSLS            PPVQLHL     SSDPP ++P          
Sbjct: 1   MRIRKRQLPLPAFSSLSD-----------PPVQLHLPSSSSSSDPP-INPL--------- 60

Query: 61  NNALGKKDQLEQHDSRETTVFGAEA-SNGVLPLSSSSPQVGDGQWCERDKDFPLKKRRGS 120
           +N   K+  L+Q+DSRET + GAE  +N +LP SSSS QVG G+WCE++K FPLKKRRGS
Sbjct: 61  DNNNQKQKLLQQYDSRETILIGAETINNALLPHSSSSSQVGGGRWCEKEKAFPLKKRRGS 120

Query: 121 FERQSDDDQN--NADDQTTTAAA-AAAMESLPDHKKTTKNKKQPKLGLNLA-GKKRSRGG 180
           FER SD+D +  N D Q  T       M     +KK T ++KQ K+GL++  GKKRSRGG
Sbjct: 121 FERSSDEDNDDHNKDIQVATKLQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVGKKRSRGG 180

Query: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKNIV 240
           ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVR+RSL  AAAT KNIV
Sbjct: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL--AAATPKNIV 240

Query: 241 TVDKDEKKP-----PPCPPPPSPSLTLASKKRTKLGLVKARSISSLLGQPDGMAAIPPPP 300
            ++KDEKKP     P  PPPPS S +L +KKR KLG+VKARSISSLLGQPDG+ A P   
Sbjct: 241 VIEKDEKKPSPSQFPSSPPPPS-SFSLTNKKRMKLGVVKARSISSLLGQPDGIVATPLSL 287

Query: 301 PPSQSTLPNDNINQ 302
           P   STL +DNI++
Sbjct: 301 P---STLHDDNIDK 287

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BLAST of CmoCh14G004160.1 vs. NCBI nr
Match: gi|449437904|ref|XP_004136730.1| (PREDICTED: uncharacterized protein LOC101223014 isoform X1 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 1.3e-74
Identity = 190/318 (59.75%), Postives = 221/318 (69.50%), Query Frame = 1


Query: 1   MRIRKRQVPLP-FSSLSPLPLSDPLLRRTPPVQLHLQLPSSDPPNLHPYACDSAAYHTNN 60
           MRIRKRQ+PLP FSSLS            PPVQL   LPSSDPP ++P          NN
Sbjct: 1   MRIRKRQLPLPTFSSLSD-----------PPVQL--PLPSSDPP-INPL--------DNN 60

Query: 61  ALGKKDQLEQHDSRETTVFGAEA-SNGVLP-LSSSSPQVGDGQWCERDKDFPLKKRRGSF 120
              K+  L+Q+DSRET + GAE  +N +LP  SSSS QVG G+WCE++K FPLKKRRGSF
Sbjct: 61  Q--KQKLLQQYDSRETILIGAETINNALLPHSSSSSSQVGGGRWCEKEKAFPLKKRRGSF 120

Query: 121 ERQSDDDQNN----ADDQTTTAAA-AAAMESLPDHKKTTKNKKQPKLGLN-LAGKKRSRG 180
           ER SD+D ++    +D Q  T       M     +KK T ++KQ K+GL+ + GKKRSRG
Sbjct: 121 ERSSDEDNDDHSKDSDHQVATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRG 180

Query: 181 GALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKNI 240
           GALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVR+RSL   AAT KNI
Sbjct: 181 GALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL--VAATPKNI 240

Query: 241 VTVDKDEKKPPPCP--------PPPSPSLTLASKKRTKLGLVKARSISSLLGQPDGMAAI 300
           V V+KDEKKP P P        PPP  S +L SKKR KLG+VKARS+SSLLGQP+ MA  
Sbjct: 241 VVVEKDEKKPSPSPPPSPFPSSPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVA 290

Query: 301 PPPPPPSQSTLPNDNINQ 302
            P  PP  STL +DNI++
Sbjct: 301 TPLSPP--STLHDDNIDK 290

[Close]

BLAST of CmoCh14G004160.1 vs. NCBI nr
Match: gi|778684741|ref|XP_011652086.1| (PREDICTED: uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus])

HSP 1 Score: 288.5 bits (737), Expect = 1.3e-74
Identity = 188/317 (59.31%), Postives = 219/317 (69.09%), Query Frame = 1


Query: 1   MRIRKRQVPLP-FSSLSPLPLSDPLLRRTPPVQLHLQLPSSDPPNLHPYACDSAAYHTNN 60
           MRIRKRQ+PLP FSSLS            PPVQL   LPSSDPP ++P          NN
Sbjct: 1   MRIRKRQLPLPTFSSLSD-----------PPVQL--PLPSSDPP-INPL--------DNN 60

Query: 61  ALGKKDQLEQHDSRETTVFGAEA-SNGVLPLSSSSPQVGDGQWCERDKDFPLKKRRGSFE 120
              K+  L+Q+DSRET + GAE  +N +LP SSSS   G G+WCE++K FPLKKRRGSFE
Sbjct: 61  Q--KQKLLQQYDSRETILIGAETINNALLPHSSSSSSQGGGRWCEKEKAFPLKKRRGSFE 120

Query: 121 RQSDDDQNN----ADDQTTTAAA-AAAMESLPDHKKTTKNKKQPKLGLN-LAGKKRSRGG 180
           R SD+D ++    +D Q  T       M     +KK T ++KQ K+GL+ + GKKRSRGG
Sbjct: 121 RSSDEDNDDHSKDSDHQVATKLQDEKKMMKTKMNKKCTLSQKQSKVGLDAVVGKKRSRGG 180

Query: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKNIV 240
           ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVR+RSL   AAT KNIV
Sbjct: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL--VAATPKNIV 240

Query: 241 TVDKDEKKPPPCP--------PPPSPSLTLASKKRTKLGLVKARSISSLLGQPDGMAAIP 300
            V+KDEKKP P P        PPP  S +L SKKR KLG+VKARS+SSLLGQP+ MA   
Sbjct: 241 VVEKDEKKPSPSPPPSPFPSSPPPPSSFSLTSKKRMKLGVVKARSMSSLLGQPEAMAVAT 289

Query: 301 PPPPPSQSTLPNDNINQ 302
           P  PP  STL +DNI++
Sbjct: 301 PLSPP--STLHDDNIDK 289

[Close]

BLAST of CmoCh14G004160.1 vs. NCBI nr
Match: gi|659084726|ref|XP_008443039.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X3 [Cucumis melo])

HSP 1 Score: 287.7 bits (735), Expect = 2.3e-74
Identity = 190/314 (60.51%), Postives = 221/314 (70.38%), Query Frame = 1


Query: 1   MRIRKRQVPLP-FSSLSPLPLSDPLLRRTPPVQLHL--QLPSSDPPNLHPYACDSAAYHT 60
           MRIRKRQ+PLP FSSLS            PPVQLHL     SSDPP ++P          
Sbjct: 1   MRIRKRQLPLPAFSSLSD-----------PPVQLHLPSSSSSSDPP-INPL--------- 60

Query: 61  NNALGKKDQLEQHDSRETTVFGAEA-SNGVLPLSSSSPQVGDGQWCERDKDFPLKKRRGS 120
           +N   K+  L+Q+DSRET + GAE  +N +LP SSSS Q G G+WCE++K FPLKKRRGS
Sbjct: 61  DNNNQKQKLLQQYDSRETILIGAETINNALLPHSSSSSQ-GGGRWCEKEKAFPLKKRRGS 120

Query: 121 FERQSDDDQN--NADDQTTTAAA-AAAMESLPDHKKTTKNKKQPKLGLNLA-GKKRSRGG 180
           FER SD+D +  N D Q  T       M     +KK T ++KQ K+GL++  GKKRSRGG
Sbjct: 121 FERSSDEDNDDHNKDIQVATKLQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVGKKRSRGG 180

Query: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAAATLKNIV 240
           ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVR+RSL  AAAT KNIV
Sbjct: 181 ALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL--AAATPKNIV 240

Query: 241 TVDKDEKKP-----PPCPPPPSPSLTLASKKRTKLGLVKARSISSLLGQPDGMAAIPPPP 300
            ++KDEKKP     P  PPPPS S +L +KKR KLG+VKARSISSLLGQPDG+ A P   
Sbjct: 241 VIEKDEKKPSPSQFPSSPPPPS-SFSLTNKKRMKLGVVKARSISSLLGQPDGIVATPLSL 286

Query: 301 PPSQSTLPNDNINQ 302
           P   STL +DNI++
Sbjct: 301 P---STLHDDNIDK 286

[Close]

BLAST of CmoCh14G004160.1 vs. NCBI nr
Match: gi|659084722|ref|XP_008443037.1| (PREDICTED: uncharacterized protein LOC103486754 isoform X1 [Cucumis melo])

HSP 1 Score: 287.3 bits (734), Expect = 3.0e-74
Identity = 191/321 (59.50%), Postives = 222/321 (69.16%), Query Frame = 1


Query: 1   MRIRKRQVPLP-FSSLSPLPLSDPLLRRTPPVQLHL--QLPSSDPPNLHPYACDSAAYHT 60
           MRIRKRQ+PLP FSSLS            PPVQLHL     SSDPP ++P          
Sbjct: 1   MRIRKRQLPLPAFSSLSD-----------PPVQLHLPSSSSSSDPP-INPL--------- 60

Query: 61  NNALGKKDQLEQHDSRETTVFGAEA-SNGVLPLSSSSPQV-------GDGQWCERDKDFP 120
           +N   K+  L+Q+DSRET + GAE  +N +LP SSSS QV       G G+WCE++K FP
Sbjct: 61  DNNNQKQKLLQQYDSRETILIGAETINNALLPHSSSSSQVVVVFDVVGGGRWCEKEKAFP 120

Query: 121 LKKRRGSFERQSDDDQN--NADDQTTTAAA-AAAMESLPDHKKTTKNKKQPKLGLNLA-G 180
           LKKRRGSFER SD+D +  N D Q  T       M     +KK T ++KQ K+GL++  G
Sbjct: 121 LKKRRGSFERSSDEDNDDHNKDIQVATKLQDEKKMIKTKMNKKCTLSQKQSKVGLDIVVG 180

Query: 181 KKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRSRSLAAAA 240
           KKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVR+RSL  AA
Sbjct: 181 KKRSRGGALMEGSRCSRVNGRGWRCCQQTLVGYSLCEHHLGKGRLRSMNNVRNRSL--AA 240

Query: 241 ATLKNIVTVDKDEKKP-----PPCPPPPSPSLTLASKKRTKLGLVKARSISSLLGQPDGM 300
           AT KNIV ++KDEKKP     P  PPPPS S +L +KKR KLG+VKARSISSLLGQPDG+
Sbjct: 241 ATPKNIVVIEKDEKKPSPSQFPSSPPPPS-SFSLTNKKRMKLGVVKARSISSLLGQPDGI 294

Query: 301 AAIPPPPPPSQSTLPNDNINQ 302
            A P   P   STL +DNI++
Sbjct: 301 VATPLSLP---STLHDDNIDK 294

The following BLAST results are available for this feature:

BLAST of CmoCh14G004160.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G004160.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LGX5_CUCSA	9.4e-75	59.31	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G806230 PE=4 SV=1	[more]
A0A067JP86_JATCU	8.0e-50	46.13	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25554 PE=4 SV=1	[more]
A0A061EXI8_THECC	1.4e-49	43.01	Uncharacterized protein OS=Theobroma cacao GN=TCM_024932 PE=4 SV=1	[more]
A0A0D2QCR9_GOSRA	2.2e-47	45.14	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G156300 PE=4 SV=1	[more]
A0A067FU33_CITSI	2.8e-47	43.67	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g019760mg PE=4 SV=1	[more]

BLAST of CmoCh14G004160.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G42040.1	1.3e-30	37.07	WRC (InterPro:IPR014977)	[more]

BLAST of CmoCh14G004160.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659084724\|ref\|XP_008443038.1\|	2.5e-76	60.83	PREDICTED: uncharacterized protein LOC103486754 isoform X2 [Cucumis melo]	[more]
gi\|449437904\|ref\|XP_004136730.1\|	1.3e-74	59.75	PREDICTED: uncharacterized protein LOC101223014 isoform X1 [Cucumis sativus]	[more]
gi\|778684741\|ref\|XP_011652086.1\|	1.3e-74	59.31	PREDICTED: uncharacterized protein LOC101223014 isoform X2 [Cucumis sativus]	[more]
gi\|659084726\|ref\|XP_008443039.1\|	2.3e-74	60.51	PREDICTED: uncharacterized protein LOC103486754 isoform X3 [Cucumis melo]	[more]
gi\|659084722\|ref\|XP_008443037.1\|	3.0e-74	59.50	PREDICTED: uncharacterized protein LOC103486754 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR014977	WRC_dom

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated
GO:0032502	developmental process

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032502	developmental process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh14G004160	CmoCh14G004160	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh14G004160.1	CmoCh14G004160.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G004160.1.exon.4	CmoCh14G004160.1.exon.4	exon
CmoCh14G004160.1.exon.3	CmoCh14G004160.1.exon.3	exon
CmoCh14G004160.1.exon.2	CmoCh14G004160.1.exon.2	exon
CmoCh14G004160.1.exon.1	CmoCh14G004160.1.exon.1	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G004160.1.five_prime_UTR.1	CmoCh14G004160.1.five_prime_UTR.1	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G004160.1.CDS.1	CmoCh14G004160.1.CDS.1	CDS
CmoCh14G004160.1.CDS.2	CmoCh14G004160.1.CDS.2	CDS
CmoCh14G004160.1.CDS.3	CmoCh14G004160.1.CDS.3	CDS
CmoCh14G004160.1.CDS.4	CmoCh14G004160.1.CDS.4	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh14G004160.1.three_prime_UTR.1	CmoCh14G004160.1.three_prime_UTR.1	three_prime_UTR

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014977	WRC domain	PFAM	PF08879	WRC	coord: 176..216 score: 3.0
IPR014977	WRC domain	PROFILE	PS51667	WRC	coord: 174..218 score: 21
None	No IPR available	PANTHER	PTHR31602:SF19	SUBFAMILY NOT NAMED	coord: 165..232 score: 4.5