CmoCh12G007670.1 (mRNA) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh12G007670.1
Type	mRNA
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	NADH-quinone oxidoreductase subunit D
Location	Cmo_Chr12 : 6144499 .. 6144792 (+)
Sequence length	294

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTACAGGATCATCATCGGTCTACTCTACCTCAATTCACCATTTCGAACTTTATACAGAAGCTTTTTTCGTACCAGTTTCTTCTACCTATACTGCAGTGGAAGCACTTAAAGGGGAATTTGGTGTCTTTCTGGTCAGTAATGGAAGCAATCGTCCCTACCGTCGTAAAATAAGAGCACCTGGCTGTGCCCATTCACAAGGACTTGATTCTATGGCCAAACATCACATGCCAGCAGATGTAGTCACCATCATTGGTACTCAAGATATTGTGTCTGGAGAGGTAGATAGATAG

mRNA sequence

ATGACTACAGGATCATCATCGGTCTACTCTACCTCAATTCACCATTTCGAACTTTATACAGAAGCTTTTTTCGTACCAGTTTCTTCTACCTATACTGCAGTGGAAGCACTTAAAGGGGAATTTGGTGTCTTTCTGGTCAGTAATGGAAGCAATCGTCCCTACCGTCGTAAAATAAGAGCACCTGGCTGTGCCCATTCACAAGGACTTGATTCTATGGCCAAACATCACATGCCAGCAGATGTAGTCACCATCATTGGTACTCAAGATATTGTGTCTGGAGAGGTAGATAGATAG

Coding sequence (CDS)

ATGACTACAGGATCATCATCGGTCTACTCTACCTCAATTCACCATTTCGAACTTTATACAGAAGCTTTTTTCGTACCAGTTTCTTCTACCTATACTGCAGTGGAAGCACTTAAAGGGGAATTTGGTGTCTTTCTGGTCAGTAATGGAAGCAATCGTCCCTACCGTCGTAAAATAAGAGCACCTGGCTGTGCCCATTCACAAGGACTTGATTCTATGGCCAAACATCACATGCCAGCAGATGTAGTCACCATCATTGGTACTCAAGATATTGTGTCTGGAGAGGTAGATAGATAG

Homology

[Close]

BLAST of CmoCh12G007670.1 vs. Swiss-Prot
Match: NDUS2_NICSY (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN=NAD7 PE=2 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 4.7e-37
Identity = 77/87 (88.51%), Postives = 79/87 (90.80%), Query Frame = 1


Query: 11  TSIHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRAPGCAHSQGLD 70
           +SIHHFE YTE F VP  STYTAVEA KGEFGVFLVSNGSNRPYRRKIRAP  AHSQGLD
Sbjct: 308 SSIHHFEPYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPCFAHSQGLD 367

Query: 71  SMAKHHMPADVVTIIGTQDIVSGEVDR 98
           SM+KHHMPADVVTIIGTQDIVSGEVDR
Sbjct: 368 SMSKHHMPADVVTIIGTQDIVSGEVDR 394

[Close]

BLAST of CmoCh12G007670.1 vs. Swiss-Prot
Match: NDUS2_ARATH (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana GN=NAD7 PE=2 SV=2)

HSP 1 Score: 149.1 bits (375), Expect = 2.6e-35
Identity = 75/87 (86.21%), Postives = 77/87 (88.51%), Query Frame = 1


Query: 11  TSIHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRAPGCAHSQGLD 70
           +SIHHFELYTE F VP SSTYTAVEA KGEFGVFLVSNGSNRPYR KIRAPG AH QGLD
Sbjct: 308 SSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRCKIRAPGFAHLQGLD 367

Query: 71  SMAKHHMPADVVTIIGTQDIVSGEVDR 98
            M+KHHM ADVVTIIGTQDIV GEVDR
Sbjct: 368 FMSKHHMLADVVTIIGTQDIVFGEVDR 394

[Close]

BLAST of CmoCh12G007670.1 vs. Swiss-Prot
Match: NDUS2_NEPOL (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nephroselmis olivacea GN=NAD7 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 1.9e-30
Identity = 65/85 (76.47%), Postives = 73/85 (85.88%), Query Frame = 1


Query: 13  IHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRAPGCAHSQGLDSM 72
           IHHF+L+TE + VP S TYT+VEA KGEFGV+LVSNG+NRPYR KIRAPG  H QGLD M
Sbjct: 314 IHHFKLFTEGYTVPNSETYTSVEAPKGEFGVYLVSNGTNRPYRCKIRAPGFLHLQGLDMM 373

Query: 73  AKHHMPADVVTIIGTQDIVSGEVDR 98
           +K+HM ADVVTIIGTQDIV GEVDR
Sbjct: 374 SKNHMLADVVTIIGTQDIVFGEVDR 398

[Close]

BLAST of CmoCh12G007670.1 vs. Swiss-Prot
Match: NDUS2_PROWI (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Prototheca wickerhamii GN=NAD7 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 7.3e-30
Identity = 64/85 (75.29%), Postives = 71/85 (83.53%), Query Frame = 1


Query: 13  IHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRAPGCAHSQGLDSM 72
           IHHF+ YT  F VP   TYTAVEA KGEFGV+LVSNG+++PYR KIRAPG AH QGLD M
Sbjct: 316 IHHFKFYTGGFVVPAGETYTAVEAPKGEFGVYLVSNGTSKPYRCKIRAPGFAHLQGLDFM 375

Query: 73  AKHHMPADVVTIIGTQDIVSGEVDR 98
           A++HM ADVVTIIGTQDIV GEVDR
Sbjct: 376 ARNHMLADVVTIIGTQDIVFGEVDR 400

[Close]

BLAST of CmoCh12G007670.1 vs. Swiss-Prot
Match: NDUS2_RECAM (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Reclinomonas americana GN=NAD7 PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-29
Identity = 62/85 (72.94%), Postives = 73/85 (85.88%), Query Frame = 1


Query: 13  IHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRAPGCAHSQGLDSM 72
           IHHF+LYTE + VP+  TYTAVEA KGEFGV+LVS+GS++PYR KI+APG +H QGL+ M
Sbjct: 312 IHHFKLYTEGYSVPIGETYTAVEAPKGEFGVYLVSDGSSKPYRCKIKAPGFSHLQGLNFM 371

Query: 73  AKHHMPADVVTIIGTQDIVSGEVDR 98
           +K HM ADVVTIIGTQDIV GEVDR
Sbjct: 372 SKGHMIADVVTIIGTQDIVFGEVDR 396

[Close]

BLAST of CmoCh12G007670.1 vs. TrEMBL
Match: D7TKS7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0246g00010 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 4.9e-41
Identity = 89/97 (91.75%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1   MTTGSSSVYSTSIHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRA 60
           MTTGS SVYSTSIHHFE YTE FFVP  STYTAVEA KGEFGVFLVSNGSNRPYRRKIRA
Sbjct: 290 MTTGS-SVYSTSIHHFEPYTEGFFVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRA 349

Query: 61  PGCAHSQGLDSMAKHHMPADVVTIIGTQDIVSGEVDR 98
           PG AHSQGLDSM+KHHMPADVVTIIGTQDIVSGEVDR
Sbjct: 350 PGSAHSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 385

[Close]

BLAST of CmoCh12G007670.1 vs. TrEMBL
Match: D7TSH3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0332g00140 PE=4 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 4.9e-41
Identity = 89/97 (91.75%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1   MTTGSSSVYSTSIHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRA 60
           MTTGS SVYSTSIHHFE YTE FFVP  STYTAVEA KGEFGVFLVSNGSNRPYRRKIRA
Sbjct: 35  MTTGS-SVYSTSIHHFEPYTEGFFVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRA 94

Query: 61  PGCAHSQGLDSMAKHHMPADVVTIIGTQDIVSGEVDR 98
           PG AHSQGLDSM+KHHMPADVVTIIGTQDIVSGEVDR
Sbjct: 95  PGSAHSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 130

[Close]

BLAST of CmoCh12G007670.1 vs. TrEMBL
Match: A0A151UDY3_CAJCA (NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Cajanus cajan GN=KK1_046510 PE=4 SV=1)

HSP 1 Score: 174.5 bits (441), Expect = 6.4e-41
Identity = 89/97 (91.75%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1   MTTGSSSVYSTSIHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRA 60
           MTTGS SVYSTSIHHFELYTE F VP  STYTAVEA KGEFGVFLVSNGSNRPYRRKIRA
Sbjct: 32  MTTGS-SVYSTSIHHFELYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRA 91

Query: 61  PGCAHSQGLDSMAKHHMPADVVTIIGTQDIVSGEVDR 98
           PG AHSQGLDSM+KHHMPADVVTIIGTQDIVSGEVDR
Sbjct: 92  PGSAHSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 127

[Close]

BLAST of CmoCh12G007670.1 vs. TrEMBL
Match: B9TA68_RICCO (NADH-ubiquinone oxidoreductase fe-s protein, putative OS=Ricinus communis GN=RCOM_2058780 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 8.3e-41
Identity = 89/97 (91.75%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1  MTTGSSSVYSTSIHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRA 60
          MTTGS SVYSTSIHHFELYTE F VP SSTYTAVEA KGEFGVFLVSNGSNRPYRRKIRA
Sbjct: 1  MTTGS-SVYSTSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRA 60

Query: 61 PGCAHSQGLDSMAKHHMPADVVTIIGTQDIVSGEVDR 98
          PG AHSQGLDSM+KHHMPADVVTIIGTQDIV GEVDR
Sbjct: 61 PGSAHSQGLDSMSKHHMPADVVTIIGTQDIVFGEVDR 96

[Close]

BLAST of CmoCh12G007670.1 vs. TrEMBL
Match: A0A078I428_BRANA (BnaCnng13090D protein OS=Brassica napus GN=BnaCnng13090D PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 1.1e-40
Identity = 89/97 (91.75%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1  MTTGSSSVYSTSIHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRA 60
          MTTGS SVYSTSIHHFELYTE F VP SSTYTAVEA KGEFGVFLVSNGSNRPYRRKIRA
Sbjct: 1  MTTGS-SVYSTSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRA 60

Query: 61 PGCAHSQGLDSMAKHHMPADVVTIIGTQDIVSGEVDR 98
          PG AHSQGLDSM+KHHMPADVVTIIGTQDIV GEVDR
Sbjct: 61 PGFAHSQGLDSMSKHHMPADVVTIIGTQDIVFGEVDR 96

[Close]

BLAST of CmoCh12G007670.1 vs. TAIR10
Match: ATMG00510.1 (ATMG00510.1 NADH dehydrogenase subunit 7)

HSP 1 Score: 161.0 bits (406), Expect = 3.7e-40
Identity = 79/87 (90.80%), Postives = 81/87 (93.10%), Query Frame = 1


Query: 11  TSIHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRAPGCAHSQGLD 70
           +SIHHFELYTE F VP SSTYTAVEA KGEFGVFLVSNGSNRPYRRKIRAPG AHSQGLD
Sbjct: 308 SSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRAPGSAHSQGLD 367

Query: 71  SMAKHHMPADVVTIIGTQDIVSGEVDR 98
           SM+KHHMPADVVTIIGTQDIV GEVDR
Sbjct: 368 SMSKHHMPADVVTIIGTQDIVFGEVDR 394

[Close]

BLAST of CmoCh12G007670.1 vs. TAIR10
Match: ATCG01110.1 (ATCG01110.1 NAD(P)H dehydrogenase subunit H)

HSP 1 Score: 67.0 bits (162), Expect = 7.2e-12
Identity = 33/67 (49.25%), Postives = 44/67 (65.67%), Query Frame = 1


Query: 31  YTAVEALKGEFGVFLVSNGSNRPYRRKIRAPGCAHSQGLDSMAKHHMPADVVTIIGTQDI 90
           Y  VEA KGE G+FL+ + S  P+R KIR PG  + Q L  + K    AD++TI+G+ DI
Sbjct: 327 YVRVEAPKGELGIFLIGDQSGFPWRWKIRPPGFINLQILPELVKRMKLADIMTILGSIDI 386

Query: 91  VSGEVDR 98
           + GEVDR
Sbjct: 387 IMGEVDR 393

[Close]

BLAST of CmoCh12G007670.1 vs. NCBI nr
Match: gi|297740917|emb|CBI31099.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 174.9 bits (442), Expect = 7.0e-41
Identity = 89/97 (91.75%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1   MTTGSSSVYSTSIHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRA 60
           MTTGS SVYSTSIHHFE YTE FFVP  STYTAVEA KGEFGVFLVSNGSNRPYRRKIRA
Sbjct: 290 MTTGS-SVYSTSIHHFEPYTEGFFVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRA 349

Query: 61  PGCAHSQGLDSMAKHHMPADVVTIIGTQDIVSGEVDR 98
           PG AHSQGLDSM+KHHMPADVVTIIGTQDIVSGEVDR
Sbjct: 350 PGSAHSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 385

[Close]

BLAST of CmoCh12G007670.1 vs. NCBI nr
Match: gi|296087071|emb|CBI33445.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 174.9 bits (442), Expect = 7.0e-41
Identity = 89/97 (91.75%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1   MTTGSSSVYSTSIHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRA 60
           MTTGS SVYSTSIHHFE YTE FFVP  STYTAVEA KGEFGVFLVSNGSNRPYRRKIRA
Sbjct: 35  MTTGS-SVYSTSIHHFEPYTEGFFVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRA 94

Query: 61  PGCAHSQGLDSMAKHHMPADVVTIIGTQDIVSGEVDR 98
           PG AHSQGLDSM+KHHMPADVVTIIGTQDIVSGEVDR
Sbjct: 95  PGSAHSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 130

[Close]

BLAST of CmoCh12G007670.1 vs. NCBI nr
Match: gi|1012366334|gb|KYP77515.1| (NADH-ubiquinone oxidoreductase 49 kDa subunit [Cajanus cajan])

HSP 1 Score: 174.5 bits (441), Expect = 9.1e-41
Identity = 89/97 (91.75%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1   MTTGSSSVYSTSIHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRA 60
           MTTGS SVYSTSIHHFELYTE F VP  STYTAVEA KGEFGVFLVSNGSNRPYRRKIRA
Sbjct: 32  MTTGS-SVYSTSIHHFELYTEGFSVPAPSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRA 91

Query: 61  PGCAHSQGLDSMAKHHMPADVVTIIGTQDIVSGEVDR 98
           PG AHSQGLDSM+KHHMPADVVTIIGTQDIVSGEVDR
Sbjct: 92  PGSAHSQGLDSMSKHHMPADVVTIIGTQDIVSGEVDR 127

[Close]

BLAST of CmoCh12G007670.1 vs. NCBI nr
Match: gi|223523942|gb|EEF27243.1| (NADH-ubiquinone oxidoreductase fe-s protein, putative [Ricinus communis])

HSP 1 Score: 174.1 bits (440), Expect = 1.2e-40
Identity = 89/97 (91.75%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1  MTTGSSSVYSTSIHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRA 60
          MTTGS SVYSTSIHHFELYTE F VP SSTYTAVEA KGEFGVFLVSNGSNRPYRRKIRA
Sbjct: 1  MTTGS-SVYSTSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRA 60

Query: 61 PGCAHSQGLDSMAKHHMPADVVTIIGTQDIVSGEVDR 98
          PG AHSQGLDSM+KHHMPADVVTIIGTQDIV GEVDR
Sbjct: 61 PGSAHSQGLDSMSKHHMPADVVTIIGTQDIVFGEVDR 96

[Close]

BLAST of CmoCh12G007670.1 vs. NCBI nr
Match: gi|674887141|emb|CDY45550.1| (BnaCnng13090D [Brassica napus])

HSP 1 Score: 173.7 bits (439), Expect = 1.6e-40
Identity = 89/97 (91.75%), Postives = 90/97 (92.78%), Query Frame = 1


Query: 1  MTTGSSSVYSTSIHHFELYTEAFFVPVSSTYTAVEALKGEFGVFLVSNGSNRPYRRKIRA 60
          MTTGS SVYSTSIHHFELYTE F VP SSTYTAVEA KGEFGVFLVSNGSNRPYRRKIRA
Sbjct: 1  MTTGS-SVYSTSIHHFELYTEGFSVPASSTYTAVEAPKGEFGVFLVSNGSNRPYRRKIRA 60

Query: 61 PGCAHSQGLDSMAKHHMPADVVTIIGTQDIVSGEVDR 98
          PG AHSQGLDSM+KHHMPADVVTIIGTQDIV GEVDR
Sbjct: 61 PGFAHSQGLDSMSKHHMPADVVTIIGTQDIVFGEVDR 96

The following BLAST results are available for this feature:

BLAST of CmoCh12G007670.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NDUS2_NICSY	4.7e-37	88.51	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nicotiana sylvestris GN...	[more]
NDUS2_ARATH	2.6e-35	86.21	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Arabidopsis thaliana GN...	[more]
NDUS2_NEPOL	1.9e-30	76.47	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2 OS=Nephroselmis olivacea G...	[more]
NDUS2_PROWI	7.3e-30	75.29	NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Prototheca wickerhamii GN=NAD7 ...	[more]
NDUS2_RECAM	3.6e-29	72.94	NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Reclinomonas americana GN=NAD7 ...	[more]

BLAST of CmoCh12G007670.1 vs. TrEMBL


Match Name	E-value	Identity	Description
D7TKS7_VITVI	4.9e-41	91.75	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0246g00010 PE=4 SV=...	[more]
D7TSH3_VITVI	4.9e-41	91.75	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s0332g00140 PE=4 SV=...	[more]
A0A151UDY3_CAJCA	6.4e-41	91.75	NADH-ubiquinone oxidoreductase 49 kDa subunit OS=Cajanus cajan GN=KK1_046510 PE=...	[more]
B9TA68_RICCO	8.3e-41	91.75	NADH-ubiquinone oxidoreductase fe-s protein, putative OS=Ricinus communis GN=RCO...	[more]
A0A078I428_BRANA	1.1e-40	91.75	BnaCnng13090D protein OS=Brassica napus GN=BnaCnng13090D PE=4 SV=1	[more]

BLAST of CmoCh12G007670.1 vs. TAIR10


Match Name	E-value	Identity	Description
ATMG00510.1	3.7e-40	90.80	ATMG00510.1 NADH dehydrogenase subunit 7	[more]
ATCG01110.1	7.2e-12	49.25	ATCG01110.1 NAD(P)H dehydrogenase subunit H	[more]

BLAST of CmoCh12G007670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|297740917\|emb\|CBI31099.3\|	7.0e-41	91.75	unnamed protein product [Vitis vinifera]	[more]
gi\|296087071\|emb\|CBI33445.3\|	7.0e-41	91.75	unnamed protein product [Vitis vinifera]	[more]
gi\|1012366334\|gb\|KYP77515.1\|	9.1e-41	91.75	NADH-ubiquinone oxidoreductase 49 kDa subunit [Cajanus cajan]	[more]
gi\|223523942\|gb\|EEF27243.1\|	1.2e-40	91.75	NADH-ubiquinone oxidoreductase fe-s protein, putative [Ricinus communis]	[more]
gi\|674887141\|emb\|CDY45550.1\|	1.6e-40	91.75	BnaCnng13090D [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001135	NADH_Q_OxRdtase_suD

Vocabulary: **Molecular Function**
Term	Definition
GO:0016651	oxidoreductase activity, acting on NAD(P)H
GO:0048038	quinone binding
GO:0051287	NAD binding

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
biological_process	GO:0006120	mitochondrial electron transport, NADH to ubiquinone
biological_process	GO:0015992	proton transport
biological_process	GO:0006814	sodium ion transport
biological_process	GO:0006744	ubiquinone biosynthetic process
cellular_component	GO:0005739	mitochondrion
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H
molecular_function	GO:0048038	quinone binding
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmoCh12G007670	CmoCh12G007670	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmoCh12G007670.1	CmoCh12G007670.1-protein	polypeptide

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh12G007670.1.exon.1	CmoCh12G007670.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmoCh12G007670.1.CDS.1	CmoCh12G007670.1.CDS.1	CDS

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001135	NADH-quinone oxidoreductase, subunit D	PFAM	PF00346	Complex1_49kDa	coord: 9..97 score: 1.6
None	No IPR available	PANTHER	PTHR11993	NADH-UBIQUINONE OXIDOREDUCTASE 49 KDA SUBUNIT	coord: 9..92 score: 2.5