CmoCh11G011070.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATAATACTTTGGCTCCATCTTCGCGTTAAATCCACCTTGTGGAAAAGGCAACGCTCAGAGGTGAAATCGAGCCAACACAAGATTTGGTTTCTTCAGTGGAAGGAAAGAAGGAAGGAAGGAAGGAAGGATCATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGCTCTGCTGATGAAGCCGCTCTTTGCCATGGCTGCGATCTCCATGTTCACCGCGCTAACAAGCTCGCCGGAAAGCACTCGAGATTCTCCCTACTTCAGCCGATCAAAATCGATTCTCCTCTTTGCGATATCTGTCAGGTATTTTTGATTCTGGCTCTGGAAAATGTTTCTGCTGCTGTGCGATTTGATTCTTTGTTTTGAGGTTTCTGTAAAATCGAATCAATGTTGCAGAGAATCTTCGCGTTCTTTTGTACCTTTCTTGGAAATATCTACTCTCTTTCGTCGGTTTCTGATCTCGTTCGTTTCTTCGATTTTTGGAGTTTGAATGATTTGGCGGAGAGGATTCTTATTTCTTTCTGAAATTTCAAATTAAAATCGATTTTGACCTCGGATTTCGTATGTAGGAACGGCGCGCGCTCGTATTCTGTCAACAAGATAGGGCCATTCTTTGCCGAGAATGCGACATTTCGATTCACGGAACGAACGAACGTACGCAGAAGCACAATCGATTTCTTCTCACAGGTGTGAAGCTTTCTTCGACTTCTTTTTCGTACCAAACATCTTCGTCCTCCAATGGCTACAATGCTGCCATGGATGTTAAAACTCGAAGCTCCCACGCTTGCAGCAAGAGCCCTAAAATGGCCGCGCACGAAACCTCGAGTTCTCCTTCCTCTGAAAAAGCTGCTCCGTCGACAAGTAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGAGGTTCGTTCTCGACTAGCAGCATATCGGAATATTTGGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTCGATCCTTCCACCGCCGCTGCCAATCGTTTCTGTAAGGTTTGCAGTACGCCCTCTGCATAGATTGAGAGTACTTTCATGAACTTCCATATTCTTCTTCTTCCTCTTCATCTTCATCATCATCTTCTGATGGTTCCTACTTTGGATTGGTATAGTTTAACGGCGAAATTCTGGCAACTGGGAACCAAAATCTGGAGAGGCAACAGGAATCACTAGGCATCGAAAGATTTGGCAACACCTTGGAATTTGTAGGTAAATTTTCTCAAACTGGATTTTGGAATGGAGTTGGAATCTCCATGAAAACTTGTAGAGGTGAAAAAATGGCGGTGGCTGATAAGATCATCAGCAACTTTTGCTCTGAAAACAATTCTGGTAAAATCAAAAAACAAACAGAAACTAACTTTTTGTTTGTTGCTGCTGATTTGCATGTTTTACCTTACTCCCACTCTTTAGATTGC ATAATACTTTGGCTCCATCTTCGCGTTAAATCCACCTTGTGGAAAAGGCAACGCTCAGAGGTGAAATCGAGCCAACACAAGATTTGGTTTCTTCAGTGGAAGGAAAGAAGGAAGGAAGGAAGGAAGGATCATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGCTCTGCTGATGAAGCCGCTCTTTGCCATGGCTGCGATCTCCATGTTCACCGCGCTAACAAGCTCGCCGGAAAGCACTCGAGATTCTCCCTACTTCAGCCGATCAAAATCGATTCTCCTCTTTGCGATATCTGTCAGGAACGGCGCGCGCTCGTATTCTGTCAACAAGATAGGGCCATTCTTTGCCGAGAATGCGACATTTCGATTCACGGAACGAACGAACGTACGCAGAAGCACAATCGATTTCTTCTCACAGGTGTGAAGCTTTCTTCGACTTCTTTTTCGTACCAAACATCTTCGTCCTCCAATGGCTACAATGCTGCCATGGATGTTAAAACTCGAAGCTCCCACGCTTGCAGCAAGAGCCCTAAAATGGCCGCGCACGAAACCTCGAGTTCTCCTTCCTCTGAAAAAGCTGCTCCGTCGACAAGTAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGAGGTTCGTTCTCGACTAGCAGCATATCGGAATATTTGGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTCGATCCTTCCACCGCCGCTGCCAATCGTTTCTGTAAGTTTAACGGCGAAATTCTGGCAACTGGGAACCAAAATCTGGAGAGGCAACAGGAATCACTAGGCATCGAAAGATTTGGCAACACCTTGGAATTTGTAGGTAAATTTTCTCAAACTGGATTTTGGAATGGAGTTGGAATCTCCATGAAAACTTGTAGAGGTGAAAAAATGGCGGTGGCTGATAAGATCATCAGCAACTTTTGCTCTGAAAACAATTCTGGTAAAATCAAAAAACAAACAGAAACTAACTTTTTGTTTGTTGCTGCTGATTTGCATGTTTTACCTTACTCCCACTCTTTAGATTGC ATGAAGATCCGTTGCGATGTTTGTGATCAAGCTGAGGCCTCTGTTTTTTGCTCTGCTGATGAAGCCGCTCTTTGCCATGGCTGCGATCTCCATGTTCACCGCGCTAACAAGCTCGCCGGAAAGCACTCGAGATTCTCCCTACTTCAGCCGATCAAAATCGATTCTCCTCTTTGCGATATCTGTCAGGAACGGCGCGCGCTCGTATTCTGTCAACAAGATAGGGCCATTCTTTGCCGAGAATGCGACATTTCGATTCACGGAACGAACGAACGTACGCAGAAGCACAATCGATTTCTTCTCACAGGTGTGAAGCTTTCTTCGACTTCTTTTTCGTACCAAACATCTTCGTCCTCCAATGGCTACAATGCTGCCATGGATGTTAAAACTCGAAGCTCCCACGCTTGCAGCAAGAGCCCTAAAATGGCCGCGCACGAAACCTCGAGTTCTCCTTCCTCTGAAAAAGCTGCTCCGTCGACAAGTAATTACAAGGTCGAAGACGGCCAAGCAAGCGACGGAGGTTCGTTCTCGACTAGCAGCATATCGGAATATTTGGAGACATTGCCGGGATGGTGCGTGGAGGAGTTTCTCGATCCTTCCACCGCCGCTGCCAATCGTTTCTGTAAGTTTAACGGCGAAATTCTGGCAACTGGGAACCAAAATCTGGAGAGGCAACAGGAATCACTAGGCATCGAAAGATTTGGCAACACCTTGGAATTTGTAGGTAAATTTTCTCAAACTGGATTTTGGAATGGAGTTGGAATCTCCATGAAAACTTGTAGAGGTGAAAAAATGGCGGTGGCTGATAAGATCATCAGCAACTTTTGCTCTGAAAACAATTCTGGTAAAATCAAAAAACAAACAGAAACTAACTTTTTGTTTGTTGCTGCTGATTTGCATGTTTTACCTTACTCCCACTCTTTAGATTGC
BLAST of CmoCh11G011070.1 vs. Swiss-Prot
Match: BBX20_ARATH (B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20 PE=1 SV=1) HSP 1 Score: 211.8 bits (538), Expect = 1.0e-53 Identity = 130/255 (50.98%), Postives = 157/255 (61.57%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. Swiss-Prot
Match: BBX21_ARATH (B-box zinc finger protein 21 OS=Arabidopsis thaliana GN=BBX21 PE=1 SV=1) HSP 1 Score: 201.4 bits (511), Expect = 1.4e-50 Identity = 117/203 (57.64%), Postives = 141/203 (69.46%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. Swiss-Prot
Match: BBX24_ARATH (B-box zinc finger protein 24 OS=Arabidopsis thaliana GN=BBX24 PE=1 SV=1) HSP 1 Score: 131.3 bits (329), Expect = 1.8e-29 Identity = 68/148 (45.95%), Postives = 88/148 (59.46%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. Swiss-Prot
Match: BBX22_ARATH (B-box zinc finger protein 22 OS=Arabidopsis thaliana GN=BBX22 PE=1 SV=2) HSP 1 Score: 126.3 bits (316), Expect = 5.7e-28 Identity = 80/198 (40.40%), Postives = 104/198 (52.53%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. Swiss-Prot
Match: BBX25_ARATH (B-box zinc finger protein 25 OS=Arabidopsis thaliana GN=BBX25 PE=1 SV=2) HSP 1 Score: 126.3 bits (316), Expect = 5.7e-28 Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. TrEMBL
Match: A0A0A0K4F8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G004690 PE=4 SV=1) HSP 1 Score: 319.7 bits (818), Expect = 3.9e-84 Identity = 175/212 (82.55%), Postives = 185/212 (87.26%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. TrEMBL
Match: A0A061E0N0_THECC (B-box zinc finger family protein, putative isoform 2 OS=Theobroma cacao GN=TCM_006809 PE=4 SV=1) HSP 1 Score: 250.8 bits (639), Expect = 2.2e-63 Identity = 143/213 (67.14%), Postives = 164/213 (77.00%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. TrEMBL
Match: A0A061DYV0_THECC (B-box zinc finger family protein, putative isoform 1 OS=Theobroma cacao GN=TCM_006809 PE=4 SV=1) HSP 1 Score: 245.7 bits (626), Expect = 7.2e-62 Identity = 139/207 (67.15%), Postives = 160/207 (77.29%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. TrEMBL
Match: W9S3C1_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008433 PE=4 SV=1) HSP 1 Score: 237.3 bits (604), Expect = 2.5e-59 Identity = 139/237 (58.65%), Postives = 164/237 (69.20%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. TrEMBL
Match: B9H0W3_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0004s16810g PE=4 SV=2) HSP 1 Score: 235.0 bits (598), Expect = 1.3e-58 Identity = 128/205 (62.44%), Postives = 155/205 (75.61%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. TAIR10
Match: AT4G39070.1 (AT4G39070.1 B-box zinc finger family protein) HSP 1 Score: 211.8 bits (538), Expect = 5.8e-55 Identity = 130/255 (50.98%), Postives = 157/255 (61.57%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. TAIR10
Match: AT1G75540.1 (AT1G75540.1 salt tolerance homolog2) HSP 1 Score: 201.4 bits (511), Expect = 7.8e-52 Identity = 117/203 (57.64%), Postives = 141/203 (69.46%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. TAIR10
Match: AT1G06040.1 (AT1G06040.1 B-box zinc finger family protein) HSP 1 Score: 131.3 bits (329), Expect = 1.0e-30 Identity = 68/148 (45.95%), Postives = 88/148 (59.46%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. TAIR10
Match: AT1G78600.2 (AT1G78600.2 light-regulated zinc finger protein 1) HSP 1 Score: 126.3 bits (316), Expect = 3.2e-29 Identity = 80/198 (40.40%), Postives = 104/198 (52.53%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. TAIR10
Match: AT2G31380.1 (AT2G31380.1 salt tolerance homologue) HSP 1 Score: 126.3 bits (316), Expect = 3.2e-29 Identity = 59/122 (48.36%), Postives = 80/122 (65.57%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. NCBI nr
Match: gi|659094446|ref|XP_008448064.1| (PREDICTED: B-box zinc finger protein 20-like isoform X1 [Cucumis melo]) HSP 1 Score: 344.7 bits (883), Expect = 1.6e-91 Identity = 195/244 (79.92%), Postives = 206/244 (84.43%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. NCBI nr
Match: gi|659094448|ref|XP_008448065.1| (PREDICTED: B-box zinc finger protein 20-like isoform X2 [Cucumis melo]) HSP 1 Score: 325.5 bits (833), Expect = 1.0e-85 Identity = 183/221 (82.81%), Postives = 190/221 (85.97%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. NCBI nr
Match: gi|659094450|ref|XP_008448066.1| (PREDICTED: B-box zinc finger protein 20-like isoform X3 [Cucumis melo]) HSP 1 Score: 320.1 bits (819), Expect = 4.3e-84 Identity = 181/219 (82.65%), Postives = 188/219 (85.84%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. NCBI nr
Match: gi|449461609|ref|XP_004148534.1| (PREDICTED: B-box zinc finger protein 20 [Cucumis sativus]) HSP 1 Score: 319.7 bits (818), Expect = 5.6e-84 Identity = 175/212 (82.55%), Postives = 185/212 (87.26%), Query Frame = 1
BLAST of CmoCh11G011070.1 vs. NCBI nr
Match: gi|590685301|ref|XP_007042065.1| (B-box zinc finger family protein, putative isoform 2 [Theobroma cacao]) HSP 1 Score: 250.8 bits (639), Expect = 3.2e-63 Identity = 143/213 (67.14%), Postives = 164/213 (77.00%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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