CmoCh04G005320.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGACCTACAAACATAAAACAACTATATTGAGCGAAACGCTCAACAAAAAAGCACACCCTGAGATTATTTCAGGTAAATTTGTGCACGAACCTATGCAAACTGGGTTAAAAGCAGTAGATAGCCTGGTTCCTATAGGCCGTGGCCAACGAGAACTTATAATCGGGGACCGACAAACAGAAAAAAAACTCAAGACCTTCGTAACTTATAATCCACTTAACTATGTTCCGATCTGCAATTTTCCTTCTAATATATTGTATGAAGATTAAGCAACTGTGTATTGAGTGAAAGGCTCAACAAAAAAGCACAGAGAAACTCAGGACCCTCGTTCATTAGCTAAGATAGGGGGTATTAATCCAAAGAACTATGTAACATAAAAGAGCTGTATTGAGTGAAAAGCGTTCAATGAAAAGCACAAAGGAGCTCAGGGCCCTCGTTCATTGGCTAAGAGGCAGCATTGCTACCAAGCGCCAGAGAATTAATCAGTTCTCCTCGGACATCAACAGCATAACAATTTGAACATTCTATAAAACAGCTTAGACATCATCAACCTAAAAGTAATTTTACTGTCAACAATTTATTACATTCACCTGTAAAGGAGTAACTTCGTGTACTAACAGCGAAGGACAAACTTGTCGCAAATTTTCAGCTACAAGGCATCCCGCGCAGCGATTCTACATGTTATGGCATCTCCAACTGAGGATATTGTCAACTCGGGTCCGGTGATCTTAAAATGCTGAAGAAAAAAAGAACAATCATTTGCTATTGGCAGGGAATAACCCATAATTTGTTGTATAGTAGAAAACTTTGTAACTTAAAAATCATGTTGAGGGTCTAGTGGAGCGAGCATAGGCTTCATAGAAAATAGTGGAGGTGAACCAAGAGCATAACGTAATGGCTTGTTGCCCTAAATACTCAGTTATCAAAGGAGGAAAAAAATCATAATTGGCATATCAAGAAGACATGGAATGCACCTTTTGTATCAGAGCTTGGTCTGCTCTCCCTCCCAATTCCTCTAAGTTGA ATGACCTACAAACATAAAACAACTATATTGAGCGAAACGCTCAACAAAAAAGCACACCCTGAGATTATTTCAGGTAAATTTGTGCACGAACCTATGCAAACTGGGTTAAAAGCAGTAGATAGCCTGGTTCCTATAGGCCGTGGCCAACGAGAACTTATAATCGGGGACCGACAAACAGAAAAAAAACTCAAGACCTTCGTAACTTATAATCCACTTAACTATGTTCCGATCTGCAATTTTCCTTCTAATATATTCTTAGACATCATCAACCTAAAACGAAGGACAAACTTGTCGCAAATTTTCAGCTACAAGGCATCCCGCGCAGCGATTCTACATGTTATGGCATCTCCAACTGAGGATATTGTCAACTCGGGTCCGTTATCAAAGGAGGAAAAAAATCATAATTGGCATATCAAGAAGACATGGAATGCACCTTTTGTATCAGAGCTTGGTCTGCTCTCCCTCCCAATTCCTCTAAGTTGA ATGACCTACAAACATAAAACAACTATATTGAGCGAAACGCTCAACAAAAAAGCACACCCTGAGATTATTTCAGGTAAATTTGTGCACGAACCTATGCAAACTGGGTTAAAAGCAGTAGATAGCCTGGTTCCTATAGGCCGTGGCCAACGAGAACTTATAATCGGGGACCGACAAACAGAAAAAAAACTCAAGACCTTCGTAACTTATAATCCACTTAACTATGTTCCGATCTGCAATTTTCCTTCTAATATATTCTTAGACATCATCAACCTAAAACGAAGGACAAACTTGTCGCAAATTTTCAGCTACAAGGCATCCCGCGCAGCGATTCTACATGTTATGGCATCTCCAACTGAGGATATTGTCAACTCGGGTCCGTTATCAAAGGAGGAAAAAAATCATAATTGGCATATCAAGAAGACATGGAATGCACCTTTTGTATCAGAGCTTGGTCTGCTCTCCCTCCCAATTCCTCTAAGTTGA
BLAST of CmoCh04G005320.1 vs. Swiss-Prot
Match: ATPA_GRABC (ATP synthase subunit alpha OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=atpA PE=3 SV=1) HSP 1 Score: 78.2 bits (191), Expect = 9.2e-14 Identity = 41/73 (56.16%), Postives = 50/73 (68.49%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. Swiss-Prot
Match: ATPA_CHESB (ATP synthase subunit alpha OS=Chelativorans sp. (strain BNC1) GN=atpA PE=3 SV=1) HSP 1 Score: 77.4 bits (189), Expect = 1.6e-13 Identity = 39/57 (68.42%), Postives = 43/57 (75.44%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. Swiss-Prot
Match: ATPA_ACICJ (ATP synthase subunit alpha OS=Acidiphilium cryptum (strain JF-5) GN=atpA PE=3 SV=1) HSP 1 Score: 76.3 bits (186), Expect = 3.5e-13 Identity = 36/57 (63.16%), Postives = 44/57 (77.19%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. Swiss-Prot
Match: ATPAM_MARPO (ATP synthase subunit alpha, mitochondrial OS=Marchantia polymorpha GN=ATPA PE=3 SV=2) HSP 1 Score: 75.9 bits (185), Expect = 4.6e-13 Identity = 37/42 (88.10%), Postives = 38/42 (90.48%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. Swiss-Prot
Match: ATPAM_HELAN (ATP synthase subunit alpha, mitochondrial OS=Helianthus annuus GN=ATPA PE=3 SV=1) HSP 1 Score: 75.5 bits (184), Expect = 6.0e-13 Identity = 37/42 (88.10%), Postives = 37/42 (88.10%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. TrEMBL
Match: Q09QV8_PSINU (ATP synthase subunit alpha (Fragment) OS=Psilotum nudum GN=atp1 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12 Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. TrEMBL
Match: Q5F4P6_PSINU (ATP synthase subunit alpha (Fragment) OS=Psilotum nudum GN=atp1 PE=3 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12 Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. TrEMBL
Match: B2VPS9_PSINU (ATP synthase subunit alpha (Fragment) OS=Psilotum nudum GN=atp1 PE=4 SV=1) HSP 1 Score: 80.5 bits (197), Expect = 2.1e-12 Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. TrEMBL
Match: Q5F4P7_9MONI (ATPase alpha subunit (Fragment) OS=Tmesipteris truncata GN=atp1 PE=4 SV=1) HSP 1 Score: 80.1 bits (196), Expect = 2.7e-12 Identity = 44/95 (46.32%), Postives = 60/95 (63.16%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. TrEMBL
Match: A0A0F2KYF7_9PROT (ATP synthase subunit alpha OS=Azospirillum thiophilum GN=atpA PE=3 SV=1) HSP 1 Score: 79.7 bits (195), Expect = 3.5e-12 Identity = 41/57 (71.93%), Postives = 44/57 (77.19%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. TAIR10
Match: AT2G07698.1 (AT2G07698.1 ATPase, F1 complex, alpha subunit protein) HSP 1 Score: 73.9 bits (180), Expect = 9.8e-14 Identity = 35/42 (83.33%), Postives = 37/42 (88.10%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. TAIR10
Match: ATMG01190.1 (ATMG01190.1 ATP synthase subunit 1) HSP 1 Score: 71.2 bits (173), Expect = 6.3e-13 Identity = 34/42 (80.95%), Postives = 36/42 (85.71%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. TAIR10
Match: ATCG00120.1 (ATCG00120.1 ATP synthase subunit alpha) HSP 1 Score: 67.8 bits (164), Expect = 7.0e-12 Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. NCBI nr
Match: gi|655971204|ref|WP_029013791.1| (ATP synthase subunit alpha [Niveispirillum irakense]) HSP 1 Score: 80.9 bits (198), Expect = 2.3e-12 Identity = 42/70 (60.00%), Postives = 51/70 (72.86%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. NCBI nr
Match: gi|60099313|emb|CAD70261.1| (ATPase alpha subunit, partial (mitochondrion) [Psilotum nudum]) HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12 Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. NCBI nr
Match: gi|655968433|ref|WP_029011041.1| (ATP synthase subunit alpha [Azospirillum halopraeferens]) HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12 Identity = 40/57 (70.18%), Postives = 44/57 (77.19%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. NCBI nr
Match: gi|114216218|gb|ABI54720.1| (ATPase alpha subunit, partial (mitochondrion) [Psilotum nudum]) HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12 Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1
BLAST of CmoCh04G005320.1 vs. NCBI nr
Match: gi|187236929|gb|ACD02147.1| (F1-ATPase alpha subunit, partial (mitochondrion) [Psilotum nudum]) HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12 Identity = 47/107 (43.93%), Postives = 66/107 (61.68%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
|