CmoCh03G009630.1 (mRNA) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.CCAAGGAAAAGATAATGATCAATCCATGTTGTCTCATTCCGAGATTCAAAAGCTCCATTACCTTGTAATTCAACTGCCTAAAGAAGAACGAGGAGGAAGAAGAAGGATATGGGTGATTATGGTCCAAGGCTAGTGGTGTCTGTAGATGTGAAGAAGAACCCATGGCAACAGAAACTTCCACTTCACAACCGGTGGCACCCGGAGATACCGCCGGTGGCGGAAGTCAAGGTGGATGAGCTCTTCAAAGTCGAAATGGTGGATTTTAGTGGCGGAGCAATCACCAAAGACTACTCTGCTGAAGACGTTAAACATGCTGACAATTCCTGTGTAAGTCCTCTCTCTTACACACACACATCTTTGACTCGTCCCTGAGTTTTGTATTGGAAAAATTCACACCAGACCCAGTTGACAGAACACAATAAAGGAGCGATATTTTCAACTTAGCCTTCGGTTTGGAAATTGCGTCCTTAATGGGCAAGAAAGACAAATTAGTTTCTTGTCCTTTGTCTTATCTTTTTATCTTTTTGTGTACTTTTCAACGGTTGCTACTTCGATTAGAGGAGACTGGGGAATAAAAGAACCTAGCAGAACAAACTCAGTTTCCTAAGTTTCTGTGTACTTGTAGTCATAA CCAAGGAAAAGATAATGATCAATCCATGTTGTCTCATTCCGAGATTCAAAAGCTCCATTACCTTGTAATTCAACTGCCTAAAGAAGAACGAGGAGGAAGAAGAAGGATATGGGTGATTATGGTCCAAGGCTAGTGGTGTCTGTAGATGTGAAGAAGAACCCATGGCAACAGAAACTTCCACTTCACAACCGGTGGCACCCGGAGATACCGCCGGTGGCGGAAGTCAAGGTGGATGAGCTCTTCAAAGTCGAAATGGTGGATTTTAGTGGCGGAGCAATCACCAAAGACTACTCTGCTGAAGACGTTAAACATGCTGACAATTCCTGTTCATAA ATGGGTGATTATGGTCCAAGGCTAGTGGTGTCTGTAGATGTGAAGAAGAACCCATGGCAACAGAAACTTCCACTTCACAACCGGTGGCACCCGGAGATACCGCCGGTGGCGGAAGTCAAGGTGGATGAGCTCTTCAAAGTCGAAATGGTGGATTTTAGTGGCGGAGCAATCACCAAAGACTACTCTGCTGAAGACGTTAAACATGCTGACAATTCCTGTTCATAA
BLAST of CmoCh03G009630.1 vs. Swiss-Prot
Match: FMDA_METME (Formamidase OS=Methylophilus methylotrophus GN=fmdA PE=1 SV=1) HSP 1 Score: 69.7 bits (169), Expect = 1.5e-11 Identity = 28/64 (43.75%), Postives = 44/64 (68.75%), Query Frame = 1
BLAST of CmoCh03G009630.1 vs. Swiss-Prot
Match: FMDA_SCHPO (Putative formamidase C869.04 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC869.04 PE=3 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 2.6e-11 Identity = 31/65 (47.69%), Postives = 42/65 (64.62%), Query Frame = 1
BLAST of CmoCh03G009630.1 vs. Swiss-Prot
Match: AMDA_MYCSM (Acetamidase OS=Mycobacterium smegmatis GN=amdA PE=1 SV=2) HSP 1 Score: 59.3 bits (142), Expect = 2.0e-08 Identity = 28/65 (43.08%), Postives = 39/65 (60.00%), Query Frame = 1
BLAST of CmoCh03G009630.1 vs. TrEMBL
Match: A0A0A0KGH0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495030 PE=4 SV=1) HSP 1 Score: 129.8 bits (325), Expect = 1.4e-27 Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 1
BLAST of CmoCh03G009630.1 vs. TrEMBL
Match: F6HSU2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_07s0129g00320 PE=4 SV=1) HSP 1 Score: 127.9 bits (320), Expect = 5.2e-27 Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1
BLAST of CmoCh03G009630.1 vs. TrEMBL
Match: M5WHX3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa005607mg PE=4 SV=1) HSP 1 Score: 125.9 bits (315), Expect = 2.0e-26 Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 1
BLAST of CmoCh03G009630.1 vs. TrEMBL
Match: B9H6M1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s18890g PE=4 SV=2) HSP 1 Score: 120.6 bits (301), Expect = 8.3e-25 Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 1
BLAST of CmoCh03G009630.1 vs. TrEMBL
Match: B9H6M2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s18890g PE=4 SV=2) HSP 1 Score: 120.6 bits (301), Expect = 8.3e-25 Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 1
BLAST of CmoCh03G009630.1 vs. TAIR10
Match: AT4G37560.1 (AT4G37560.1 Acetamidase/Formamidase family protein) HSP 1 Score: 102.4 bits (254), Expect = 1.2e-22 Identity = 47/72 (65.28%), Postives = 55/72 (76.39%), Query Frame = 1
BLAST of CmoCh03G009630.1 vs. TAIR10
Match: AT4G37550.1 (AT4G37550.1 Acetamidase/Formamidase family protein) HSP 1 Score: 98.2 bits (243), Expect = 2.2e-21 Identity = 43/68 (63.24%), Postives = 50/68 (73.53%), Query Frame = 1
BLAST of CmoCh03G009630.1 vs. NCBI nr
Match: gi|659079645|ref|XP_008440367.1| (PREDICTED: putative formamidase C869.04 isoform X2 [Cucumis melo]) HSP 1 Score: 130.2 bits (326), Expect = 1.5e-27 Identity = 57/74 (77.03%), Postives = 64/74 (86.49%), Query Frame = 1
BLAST of CmoCh03G009630.1 vs. NCBI nr
Match: gi|778718613|ref|XP_011657890.1| (PREDICTED: putative formamidase C869.04 isoform X2 [Cucumis sativus]) HSP 1 Score: 129.8 bits (325), Expect = 2.0e-27 Identity = 58/74 (78.38%), Postives = 65/74 (87.84%), Query Frame = 1
BLAST of CmoCh03G009630.1 vs. NCBI nr
Match: gi|225438970|ref|XP_002284306.1| (PREDICTED: putative formamidase C869.04 isoform X1 [Vitis vinifera]) HSP 1 Score: 127.9 bits (320), Expect = 7.5e-27 Identity = 56/72 (77.78%), Postives = 64/72 (88.89%), Query Frame = 1
BLAST of CmoCh03G009630.1 vs. NCBI nr
Match: gi|645219962|ref|XP_008238118.1| (PREDICTED: putative formamidase C869.04 isoform X1 [Prunus mume]) HSP 1 Score: 125.9 bits (315), Expect = 2.8e-26 Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 1
BLAST of CmoCh03G009630.1 vs. NCBI nr
Match: gi|595824090|ref|XP_007205181.1| (hypothetical protein PRUPE_ppa005607mg [Prunus persica]) HSP 1 Score: 125.9 bits (315), Expect = 2.8e-26 Identity = 54/72 (75.00%), Postives = 64/72 (88.89%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this mRNA:
GO Assignments
This mRNA is annotated with the following GO terms.
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
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