Cla013054.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013054
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Pre-rRNA-processing protein TSR2 (AHRD V1 ***- B6SI82_MAIZE); contains Interpro domain(s) IPR019398 Pre-rRNA-processing protein TSR2, conserved region
Location	Chr5 : 10395121 .. 10397910 (+)
Sequence length	564

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTGGGGGAAACTGCCTTCTCCCAGCTGATGCTTCTCCGTTGTTCCAGGAAGGTATTGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCAGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAACTATTATGTTCAGACGTTTCCACGTGGTTTACACAGGACAAAGGTAATTTTACTCCCTTCCACTTGGATAATCTTGGTTCCTTCCTATCTTCGTGCAGTTCCACTTTCTGTAGATTGATCAGTTTCTCAGGTCATGTAGTGTTTTATTTTGCTAGCAATTAAACATTTCTTTGTTGTAACTTTTTGAAGAAGCAGCTTGTGTAAACATCTAAAAGCGAATTCATTAAATGGCTAGATAAGTGTTTAAAATAGTTCCCTGAGGCGCATGCTGAGGCATGGCCCCTAGAAGCAAGGCTCCCCTAAGGTGCCTGAAATGTTGCTCTTCAAGCCTAAGTTTCTACTATTTTTTAAATAAGAATTTCTAACCTTTGAAGAAGAAACTCAGAATATTCTTAAAAAGCATACATTTTTTCTGAAATAACAGCTCTACTTACTTAAACTTTTCATCATCTTATTATTTGCAATACTATTTTTCTTCATTTATATAAGAAAATTATTTAGATTTTTCCATTGTGTGCCTCAAGTGTTTTAAAAAGCCCTCCTGGGCACACACTTAGGCATGCCTAGGCTGAAGGCGCAAGTCTAGTGCACTCACAAAATAAGGCAAGTGCACGCCTTTTGTGAAGCCCCAAGGCTTTAAGCCCTGGGCCATGTGGCTTTTTCATTATCTTTAAATTATAGTAATAATTAAGGTTTTTTCTTTTTTTAAATAAAGAAAAAAGTCAAATTTACAAAGCCTAAATGCAAAACTTCTTGTGCTTAGTTTTTTTTTCTTTTTTCGCCCCTCCAACTTGCTCTCTCTTCTTTATGCATTACTTTTATATATAGTGCGGCTCACAAAAAAAGCTTGCACCTTTGCCTAAGCCTTAAAAGACTATTGCGCTTTATTGCACCTTGAGCTTTAAAAAACATTGTGTGCCTCATAAAAAGTTATTTTTTTGGCTCCTCATGCTTAAGTCTCAAAGTGGCTGCTATTGTGCTTTAGTGCATCTCAAGCTTTAAAGAAATATAGGTTCTAGCATGTATTTTGTCTTTGATATTCATGTTGGTCAATTAATGCTTGAATTCTTTTCCTTTTGATACTCTGAATTATTTTGAACTTTCTAGATGATAGTTGATTTGTGGTGTAACTTGGTACTTTGTAAGCGTGACATTCATAGAATTTGGTTATCTTGATCTAACAGAGTTATAATTTTTATCTTGCAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTATGCTTTCATTGAATACTCAGGTTGATGACGGTAGCATTGAGGAGGTATATTTTATGCGCCTCTCAATCCTCGTTAGTCTTGGAGGAATGCCCTTTTTCTCATAACTGAGGCCTTTTTTTGGTTCCACATGATGAAATAGCATGCCGTCACATCAGACTAAATTGATACAAATATTTGTGTGAACTGCTATGACTAACTACTGCTGATGGATGGTTTTTCTACCCAAATTGACTCCGGATGGTTCTCAATGTGACTTGTGAAAATGGAATTCTGGCAGAGATATTGTTATAAATTTGCTTCCAACTCTTTGGTTGGAATAGTTTGAGATACCATCAAAATTTTAGCTATTTATTATCATAGCTGTGACTTTAGAAGATATTGCTTGGAAAACAGTGGTGATTGTATAAATACCATCCTAGTTGAACAGAACCTTATATAGTTCATTAATTTCCAATTCTAATAACTTTTTACGTCTAAGTTAAAAGTGAATTTCTTTTCTTTGTAGTCATTTTCAATTTTCTGTAGGAGGTTACTGGAAAAGTATGCTTAAAAAGCTCATAATTTCTAATTGATTTGTCCAATCACATTCTGTACCGTTGTTGCTCTCTTCCTCTTATATTAGAAGAATGAAATACCGAATGGATACAGATGGAGAAAATGAGGATAGGGTAAACGTTGAGTGAGATTAATGATGTATTATCTTGTATTTAAAATCCCCTCTGAAAAGTGAAATGTGTTACTATCTTGTAGCCTCCTTCAATAATTTTGAGTAAACTACTCTTATTAATGGATTTTTGTTGCTTGTGTTTCTTATCTAATAATTCAGGTAGCTGAAAGATTGATGGTCATGCATGAGGAATGTTTGGATGGTAACTTTAGCTCTATTGAAAGGTTAAGGCAAACCCCTCTTCCTCAAGTTGCTCATTCTCACGTTAGCCAGGTAACAAAAATTTTTGTACTAAACAGTGTTCTTTCGTAGGTCAACTTTAAGTATATGTTGAAAAGGAACTTGGTATCTGATAGATTTTTAGAGTACAGATTAGCATTGCTGTTTGTTATTCCTTGGTCTACATTGCCATAACTTTTGCTGAAGGGAGTAAACTTGGCCACTTGCATATTTCTGCATCAGCTTATTATATGGGTTATGTCATTCATACTACAAAACAAACATTTGTTTGTTATATATAGTATCTTCTAATCTTGACATTGATGAATTTTAAGGCTGTAAGTGACGATGAAGAAGAAGAAGATGTTGGAAATGATATGATGGTGGATGCCATACAACCAGCCCAATCCAGGCCTGTCAATCAGCCCAATCCAGAGGCTACGGCTGGAGCTGAAGATGGATGGGTTCAAGTCACATCGAGAAGAAGTAGGGGTACGAGAAATTAG

mRNA sequence

ATGGAAGGTGGGGGAAACTGCCTTCTCCCAGCTGATGCTTCTCCGTTGTTCCAGGAAGGTATTGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCAGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAACTATTATGTTCAGACGTTTCCACGTGGTTTACACAGGACAAAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTATGCTTTCATTGAATACTCAGGTTGATGACGGTAGCATTGAGGAGGTAGCTGAAAGATTGATGGTCATGCATGAGGAATGTTTGGATGGTAACTTTAGCTCTATTGAAAGGTTAAGGCAAACCCCTCTTCCTCAAGTTGCTCATTCTCACGTTAGCCAGGCTGTAAGTGACGATGAAGAAGAAGAAGATGTTGGAAATGATATGATGGTGGATGCCATACAACCAGCCCAATCCAGGCCTGTCAATCAGCCCAATCCAGAGGCTACGGCTGGAGCTGAAGATGGATGGGTTCAAGTCACATCGAGAAGAAGTAGGGGTACGAGAAATTAG

Coding sequence (CDS)

ATGGAAGGTGGGGGAAACTGCCTTCTCCCAGCTGATGCTTCTCCGTTGTTCCAGGAAGGTATTGGGTTGGTTTTATCTCGTTGGTCAGCTCTTCAGTTGGCAGTGGAAAATGAGTGGGGTGGTCGTGACTCTCGTCGTAAAGTTGAACTATTATGTTCAGACGTTTCCACGTGGTTTACACAGGACAAAGAGCCACTATATATTGATGATTTAGAAATGATTCTTGATGAAGCTATGCTTTCATTGAATACTCAGGTTGATGACGGTAGCATTGAGGAGGTAGCTGAAAGATTGATGGTCATGCATGAGGAATGTTTGGATGGTAACTTTAGCTCTATTGAAAGGTTAAGGCAAACCCCTCTTCCTCAAGTTGCTCATTCTCACGTTAGCCAGGCTGTAAGTGACGATGAAGAAGAAGAAGATGTTGGAAATGATATGATGGTGGATGCCATACAACCAGCCCAATCCAGGCCTGTCAATCAGCCCAATCCAGAGGCTACGGCTGGAGCTGAAGATGGATGGGTTCAAGTCACATCGAGAAGAAGTAGGGGTACGAGAAATTAG

Protein sequence

MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTPLPQVAHSHVSQAVSDDEEEEDVGNDMMVDAIQPAQSRPVNQPNPEATAGAEDGWVQVTSRRSRGTRN

Homology

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BLAST of Cla013054 vs. Swiss-Prot
Match: TSR2_HUMAN (Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens GN=TSR2 PE=1 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 3.8e-11
Identity = 53/186 (28.49%), Postives = 89/186 (47.85%), Query Frame = 1


Query: 12  DASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYIDDL 71
           DA  LF+ G+   L  W ALQ+AVEN +GG  S+ K + L   V  +F ++ + L +D++
Sbjct: 7   DARALFRAGVCAALEAWPALQIAVENGFGGVHSQEKAKWLGGAVEDYFMRNAD-LELDEV 66

Query: 72  EMILDEAMLS-LNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTPLP---QVAHS 131
           E  L E + +  +T V+DGS+ +V+++L  M      G+ +++  +         +V  +
Sbjct: 67  EDFLGELLTNEFDTVVEDGSLPQVSQQLQTMFHHFQRGDGAALREMASCITQRKCKVTAT 126

Query: 132 HVSQAVSDDEEEEDVGN--DMMVDAIQPAQSRPVNQPNPEATAG----------AEDGWV 182
            +  A   DE+E+DV +  +M V A     +     P PE +             EDGW 
Sbjct: 127 ALKTARETDEDEDDVDSVEEMEVTATNDGAATDGVCPQPEPSDPDAQTIKEEDIVEDGWT 186

[Close]

BLAST of Cla013054 vs. Swiss-Prot
Match: TSR2_BOVIN (Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus GN=TSR2 PE=2 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 8.5e-11
Identity = 54/186 (29.03%), Postives = 87/186 (46.77%), Query Frame = 1


Query: 12  DASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYIDDL 71
           D+  LF   +   L  W ALQ+AVEN +GG  S+ K E L   V  +F ++ + L +D++
Sbjct: 7   DSRALFGAAVRAALEAWPALQIAVENGFGGVYSQEKAEWLGGAVEEYFFRNAD-LELDEV 66

Query: 72  EMILDEAMLS-LNTQVDDGSIEEVAERLMVMHEECLDGNFSSIE-----------RLRQT 131
           E  L E M++  +T V+DGS+ +V+++L  M      G+ ++++           ++R T
Sbjct: 67  EDFLGELMMNEFDTVVEDGSLPQVSQQLQTMFHHFQKGDRAALKEMASLITQRKCKVRAT 126

Query: 132 PLPQVAHSHVSQAVSDDEEEE--DVGNDMMVDAI--QPAQSRPVNQPNPEATAGAEDGWV 182
            LP    +      +  EE E     +    D +  QP  S P +Q   E     EDGW 
Sbjct: 127 ALPTAGETDEDDDANSVEEMEVAATNDGAATDGVCPQPEPSGPDSQTIKEEDI-VEDGWT 186

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BLAST of Cla013054 vs. Swiss-Prot
Match: TSR2_DANRE (Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio GN=tsr2 PE=2 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.1e-10
Identity = 49/181 (27.07%), Postives = 86/181 (47.51%), Query Frame = 1


Query: 9   LPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYI 68
           L +    +F E +  VL  W  LQ+AV+N +GG  S++K E +   +  +FT D   L  
Sbjct: 4   LSSSTREVFSEAVRAVLETWPVLQIAVDNGFGGAFSQQKAEWMVDALQQYFT-DNGDLQP 63

Query: 69  DDLEMILDEAMLS-LNTQVDDGSIEEVAERLMVMHEECLDGNFSSI-ERLRQTPLPQVAH 128
           D++E  + E M +  +T VDDGS+ +VA+++  M ++C  G  + + E++ +    + + 
Sbjct: 64  DEVEDFISELMNNEFDTVVDDGSLPQVAQQVCGMFQQCEQGRLAEVREQILKLNQKKTSS 123

Query: 129 SHVSQAVS------DDEEEEDVGNDMMVDAIQPAQSRPVNQPNPEATAGAEDGWVQVTSR 182
                  +      DD++EE+  +     A     S  VN  + E     +DGW  V  +
Sbjct: 124 GRAKATPAQTPQDDDDDDEEEAMDCEGGSAGASVSSTAVNDLHHEEE--EDDGWTVVRRK 181

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BLAST of Cla013054 vs. Swiss-Prot
Match: TSR2_MOUSE (Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus GN=Tsr2 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 2.5e-10
Identity = 54/187 (28.88%), Postives = 86/187 (45.99%), Query Frame = 1


Query: 12  DASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYIDDL 71
           D   LF   +   L  W ALQ+AVEN +GG  S+ K E L   V  +F  + + L ++++
Sbjct: 7   DVRVLFGAAVRAALEAWPALQIAVENGFGGVHSQEKAEWLGGAVEDYFIANAD-LELEEI 66

Query: 72  EMILDEAMLS-LNTQVDDGSIEEVAERLMVMHEECLDGNFSSIE-----------RLRQT 131
           E  L E M +  +T V+DGS+ +V+++L  M      G+ ++++           ++  T
Sbjct: 67  EDFLGELMTTEFDTVVEDGSLPQVSQQLQTMFHHFQKGDGAALQEMTSQINQKKCKVTAT 126

Query: 132 PLPQVAHSHVSQAVSDDEEEEDV---GNDMMVDAI--QPAQSRPVNQPNPEATAGAEDGW 182
           PL     + V++   D  EE +V    +    D +  QP  S P  Q   E     EDGW
Sbjct: 127 PLMTAKETDVAEDDVDSVEEMEVTATNDGATTDEVCPQPQPSDPDTQTIKEEDI-VEDGW 186

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BLAST of Cla013054 vs. Swiss-Prot
Match: TSR2_XENLA (Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis GN=tsr2 PE=2 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 3.2e-10
Identity = 56/191 (29.32%), Postives = 88/191 (46.07%), Query Frame = 1


Query: 12  DASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQ--DKEPLYID 71
           D+  LF+E    VL  W  LQ+AVEN +GG  S+ K E +   +  +F+   D E   ++
Sbjct: 7   DSRGLFREATKAVLGSWPVLQIAVENGFGGSHSQEKAEWMVGAIDQYFSSNADLEQYEVE 66

Query: 72  D--LEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIE----RLRQ----- 131
           D  + M+ DE     +T V+DGS   VA++L V+  +C  G  ++++    +L Q     
Sbjct: 67  DSIMGMMNDE----FDTIVEDGSQALVAQQLCVLFSQCRQGETAAVQAKIAQLAQKKYDV 126

Query: 132 -TPLPQVAHSHVSQAVSDDEEE----EDVGNDMMVDAIQPA---QSRPVNQPNPEATAGA 182
              + +V  S   +  SDDEEE    E+        ++  A    S P  +  PE     
Sbjct: 127 RAKVQEVTPSDDEEESSDDEEEAMDCENTPGSSSAASLSGALGPSSAPKKEEEPE----- 186

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BLAST of Cla013054 vs. TrEMBL
Match: A0A0A0LDZ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889860 PE=4 SV=1)

HSP 1 Score: 314.3 bits (804), Expect = 9.9e-83
Identity = 157/193 (81.35%), Postives = 176/193 (91.19%), Query Frame = 1


Query: 1   MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 60
           MEGGGN LLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLC+++ TWFT
Sbjct: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60

Query: 61  QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 120
           Q+KE LYIDDLE+ILDEAMLSL+TQVDDGSIEEVAE+L++MHEEC+DGNFSSIERLRQ+P
Sbjct: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120

Query: 121 LPQVAHSHVSQAVSDDEEEEDV-----GNDMMVDAIQPAQSRPVN-QPNPEATAGAEDGW 180
            PQVAH+HV+QA SDD++++DV      NDMMVDA+QPAQSRP N Q NPEATA AEDGW
Sbjct: 121 RPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGW 180

Query: 181 VQVTSRRSRGTRN 188
           VQVTSRR+RGTRN
Sbjct: 181 VQVTSRRNRGTRN 193

[Close]

BLAST of Cla013054 vs. TrEMBL
Match: B9MZI7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s04940g PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 9.1e-52
Identity = 115/197 (58.38%), Postives = 141/197 (71.57%), Query Frame = 1


Query: 4   GGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDK 63
           G +  L AD+   F+EGI L+LS+WSALQLAVENEWGGR S    E L SD+ +WFTQ K
Sbjct: 17  GSSKQLTADSISQFREGICLILSKWSALQLAVENEWGGRGSGLLAEQLASDILSWFTQSK 76

Query: 64  EPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTPLPQ 123
           EPL+IDDLE ILDEAMLSLNT +DDGSIEEVAE+LM+MHEECL+GN+SSI++LR+     
Sbjct: 77  EPLFIDDLEGILDEAMLSLNTMIDDGSIEEVAEKLMIMHEECLEGNYSSIQKLREAAPRT 136

Query: 124 VAHSHVSQAVSDDEEEEDVGND---------MMVDAIQ-PAQSRPVNQP--NPEA-TAGA 183
            AH HV QAV  D++ ED GND         MMVDA +  ++  PVN+P   P A  A +
Sbjct: 137 RAHQHVKQAVDSDDDSEDSGNDDKMGDDESNMMVDAPEFQSKMYPVNKPVNVPRAKEAQS 196

Query: 184 EDGWVQVTSRRSRGTRN 188
           EDGW  V+SRR++  RN
Sbjct: 197 EDGWTVVSSRRNKDKRN 213

[Close]

BLAST of Cla013054 vs. TrEMBL
Match: U7E2V7_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0030s00320g PE=4 SV=1)

HSP 1 Score: 210.7 bits (535), Expect = 1.5e-51
Identity = 109/193 (56.48%), Postives = 138/193 (71.50%), Query Frame = 1


Query: 9   LPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYI 68
           L AD+   F+EGI L+LS+WSALQLAVENEWGGR S    E L SD+ +WFTQ KEPLYI
Sbjct: 21  LTADSISQFREGIRLILSKWSALQLAVENEWGGRGSHLLAEQLASDIFSWFTQSKEPLYI 80

Query: 69  DDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTPLPQVAHSH 128
           DDLE I+DEAMLSLNT ++DGS+EEVAE+LM+MHEECL+GN+SSI++LR       AH H
Sbjct: 81  DDLESIMDEAMLSLNTMIEDGSVEEVAEKLMIMHEECLEGNYSSIQKLRDEGPRMGAHQH 140

Query: 129 VSQAVSDDEEEEDV---------GNDMMVDAIQ-----PAQSRPVNQPNPEATAGAEDGW 188
           V QAV DD++ ED          G++MMVD  +        ++PVN+P  +  A +EDGW
Sbjct: 141 VKQAVEDDDDSEDSDSDDKMGDDGSNMMVDTPEFQLKTNLVNKPVNEPGAK-EAQSEDGW 200

[Close]

BLAST of Cla013054 vs. TrEMBL
Match: A0A067JIA4_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23450 PE=4 SV=1)

HSP 1 Score: 206.1 bits (523), Expect = 3.8e-50
Identity = 109/191 (57.07%), Postives = 140/191 (73.30%), Query Frame = 1


Query: 9   LPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYI 68
           L +++ P+F+EGI LVLSRWSALQLAV+NEWGGR S +    L +DV +WFTQ KEPLYI
Sbjct: 13  LLSESLPIFEEGIFLVLSRWSALQLAVQNEWGGRGSGQLANQLGADVLSWFTQSKEPLYI 72

Query: 69  DDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTPLPQVAHSH 128
           DDLE ILDE +LSLNT ++DGS+EEVAE+LM+MHEECL+GN++SIE LRQ      AH H
Sbjct: 73  DDLENILDEGLLSLNTMIEDGSVEEVAEKLMIMHEECLEGNYNSIENLRQAGPVTGAHQH 132

Query: 129 VSQAVSDDEEEE-------DVGNDMMVDA--IQPAQSR---PVNQPNPEATAGAEDGWVQ 188
           V QAV DDE+E+       D  ++MMVDA  +Q   ++    V++PN +   G EDGW  
Sbjct: 133 VRQAVDDDEDEDSDDDDSMDDKSNMMVDAPKLQSKSNQLNMQVDEPNSQQAQG-EDGWTV 192

[Close]

BLAST of Cla013054 vs. TrEMBL
Match: I3S1A5_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 2.5e-49
Identity = 108/197 (54.82%), Postives = 133/197 (67.51%), Query Frame = 1


Query: 8   LLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLY 67
           +L  DA  +F EGIGLVLSRWSALQ AVENEWGGRDS+ K   L  DV +WFT  KEP Y
Sbjct: 6   VLQGDAIRVFNEGIGLVLSRWSALQTAVENEWGGRDSKLKAHQLADDVLSWFTISKEPRY 65

Query: 68  IDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTPLPQVAHS 127
           IDDLE ILDE MLSLN +V+DGS+EEVAE LMVMHEECL+GNF SIE L++  L Q AH 
Sbjct: 66  IDDLEAILDEGMLSLNVEVEDGSVEEVAENLMVMHEECLEGNFRSIEILKEANLKQAAHP 125

Query: 128 HVSQAVSDDE-EEEDVGNDMMV----------------DAIQPAQSRPVNQPNPEATAGA 187
            V+Q V+DDE E+ED  ND  +                ++   + +RPVN   P+  A A
Sbjct: 126 RVAQIVNDDEDEDEDDDNDENIIGASNSSNMDVDIPKSESDMNSVNRPVNGTLPKVAAEA 185

[Close]

BLAST of Cla013054 vs. NCBI nr
Match: gi|659132454|ref|XP_008466207.1| (PREDICTED: pre-rRNA-processing protein TSR2 homolog [Cucumis melo])

HSP 1 Score: 317.8 bits (813), Expect = 1.3e-83
Identity = 161/193 (83.42%), Postives = 174/193 (90.16%), Query Frame = 1


Query: 1   MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 60
           MEGGGN LLPADA PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSD+ TWF 
Sbjct: 1   MEGGGNRLLPADAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDIFTWFA 60

Query: 61  QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 120
           Q+KE LYIDDLE ILDEAMLSLNTQVDDGSIEEVAERL+ MHEEC+D NFSSIERLRQ+P
Sbjct: 61  QNKEQLYIDDLETILDEAMLSLNTQVDDGSIEEVAERLIFMHEECVDRNFSSIERLRQSP 120

Query: 121 LPQVAHSHVSQAVSDDEEEEDV-----GNDMMVDAIQPAQSRPVN-QPNPEATAGAEDGW 180
            PQVAH+HV+QA SDD++++DV      NDMMVDA+QPAQSRPVN Q NPEATA AEDGW
Sbjct: 121 RPQVAHAHVNQAASDDDDDDDVEEDVNRNDMMVDAVQPAQSRPVNHQLNPEATAEAEDGW 180

Query: 181 VQVTSRRSRGTRN 188
           VQVTSRR+RGTRN
Sbjct: 181 VQVTSRRNRGTRN 193

[Close]

BLAST of Cla013054 vs. NCBI nr
Match: gi|449436990|ref|XP_004136275.1| (PREDICTED: pre-rRNA-processing protein TSR2 homolog [Cucumis sativus])

HSP 1 Score: 314.3 bits (804), Expect = 1.4e-82
Identity = 157/193 (81.35%), Postives = 176/193 (91.19%), Query Frame = 1


Query: 1   MEGGGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFT 60
           MEGGGN LLPA A PLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLC+++ TWFT
Sbjct: 1   MEGGGNRLLPAHAFPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCAEIFTWFT 60

Query: 61  QDKEPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTP 120
           Q+KE LYIDDLE+ILDEAMLSL+TQVDDGSIEEVAE+L++MHEEC+DGNFSSIERLRQ+P
Sbjct: 61  QNKEQLYIDDLEIILDEAMLSLSTQVDDGSIEEVAEKLIIMHEECVDGNFSSIERLRQSP 120

Query: 121 LPQVAHSHVSQAVSDDEEEEDV-----GNDMMVDAIQPAQSRPVN-QPNPEATAGAEDGW 180
            PQVAH+HV+QA SDD++++DV      NDMMVDA+QPAQSRP N Q NPEATA AEDGW
Sbjct: 121 RPQVAHAHVNQAESDDDDDDDVEEDVNRNDMMVDAVQPAQSRPANPQLNPEATAEAEDGW 180

Query: 181 VQVTSRRSRGTRN 188
           VQVTSRR+RGTRN
Sbjct: 181 VQVTSRRNRGTRN 193

[Close]

BLAST of Cla013054 vs. NCBI nr
Match: gi|566169539|ref|XP_006382739.1| (hypothetical protein POPTR_0005s04940g [Populus trichocarpa])

HSP 1 Score: 211.5 bits (537), Expect = 1.3e-51
Identity = 115/197 (58.38%), Postives = 141/197 (71.57%), Query Frame = 1


Query: 4   GGNCLLPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDK 63
           G +  L AD+   F+EGI L+LS+WSALQLAVENEWGGR S    E L SD+ +WFTQ K
Sbjct: 17  GSSKQLTADSISQFREGICLILSKWSALQLAVENEWGGRGSGLLAEQLASDILSWFTQSK 76

Query: 64  EPLYIDDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTPLPQ 123
           EPL+IDDLE ILDEAMLSLNT +DDGSIEEVAE+LM+MHEECL+GN+SSI++LR+     
Sbjct: 77  EPLFIDDLEGILDEAMLSLNTMIDDGSIEEVAEKLMIMHEECLEGNYSSIQKLREAAPRT 136

Query: 124 VAHSHVSQAVSDDEEEEDVGND---------MMVDAIQ-PAQSRPVNQP--NPEA-TAGA 183
            AH HV QAV  D++ ED GND         MMVDA +  ++  PVN+P   P A  A +
Sbjct: 137 RAHQHVKQAVDSDDDSEDSGNDDKMGDDESNMMVDAPEFQSKMYPVNKPVNVPRAKEAQS 196

Query: 184 EDGWVQVTSRRSRGTRN 188
           EDGW  V+SRR++  RN
Sbjct: 197 EDGWTVVSSRRNKDKRN 213

[Close]

BLAST of Cla013054 vs. NCBI nr
Match: gi|566259508|ref|XP_006389312.1| (hypothetical protein POPTR_0030s00320g [Populus trichocarpa])

HSP 1 Score: 210.7 bits (535), Expect = 2.2e-51
Identity = 109/193 (56.48%), Postives = 138/193 (71.50%), Query Frame = 1


Query: 9   LPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYI 68
           L AD+   F+EGI L+LS+WSALQLAVENEWGGR S    E L SD+ +WFTQ KEPLYI
Sbjct: 21  LTADSISQFREGIRLILSKWSALQLAVENEWGGRGSHLLAEQLASDIFSWFTQSKEPLYI 80

Query: 69  DDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTPLPQVAHSH 128
           DDLE I+DEAMLSLNT ++DGS+EEVAE+LM+MHEECL+GN+SSI++LR       AH H
Sbjct: 81  DDLESIMDEAMLSLNTMIEDGSVEEVAEKLMIMHEECLEGNYSSIQKLRDEGPRMGAHQH 140

Query: 129 VSQAVSDDEEEEDV---------GNDMMVDAIQ-----PAQSRPVNQPNPEATAGAEDGW 188
           V QAV DD++ ED          G++MMVD  +        ++PVN+P  +  A +EDGW
Sbjct: 141 VKQAVEDDDDSEDSDSDDKMGDDGSNMMVDTPEFQLKTNLVNKPVNEPGAK-EAQSEDGW 200

[Close]

BLAST of Cla013054 vs. NCBI nr
Match: gi|743919531|ref|XP_011003790.1| (PREDICTED: pre-rRNA-processing protein TSR2 homolog [Populus euphratica])

HSP 1 Score: 207.6 bits (527), Expect = 1.9e-50
Identity = 108/192 (56.25%), Postives = 137/192 (71.35%), Query Frame = 1


Query: 9   LPADASPLFQEGIGLVLSRWSALQLAVENEWGGRDSRRKVELLCSDVSTWFTQDKEPLYI 68
           L AD+   F+EGI L+LS+WSALQLAVENEWGGR S    E L SD+ +WFTQ KEPLYI
Sbjct: 19  LTADSISQFREGIRLILSKWSALQLAVENEWGGRGSHLLAEQLASDIFSWFTQSKEPLYI 78

Query: 69  DDLEMILDEAMLSLNTQVDDGSIEEVAERLMVMHEECLDGNFSSIERLRQTPLPQVAHSH 128
           DDLE ILDEAMLSLNT ++DGS+EEVAE+LM+MHEECL+GN+SSI++LR       AH H
Sbjct: 79  DDLESILDEAMLSLNTMIEDGSVEEVAEKLMIMHEECLEGNYSSIQKLRDEGPRMAAHQH 138

Query: 129 VSQAVSDDEEEEDV---------GNDMMVDAIQ-PAQSRPVNQPNPEA---TAGAEDGWV 188
           V Q V DD++ ED          G++MMVD  +   ++  VN+P  ++    A +EDGW 
Sbjct: 139 VKQVVEDDDDSEDSDSNDKMGDDGSNMMVDTPEFQLKTNLVNKPVNDSGAKEAQSEDGWT 198

The following BLAST results are available for this feature:

BLAST of Cla013054 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TSR2_HUMAN	3.8e-11	28.49	Pre-rRNA-processing protein TSR2 homolog OS=Homo sapiens GN=TSR2 PE=1 SV=1	[more]
TSR2_BOVIN	8.5e-11	29.03	Pre-rRNA-processing protein TSR2 homolog OS=Bos taurus GN=TSR2 PE=2 SV=1	[more]
TSR2_DANRE	1.1e-10	27.07	Pre-rRNA-processing protein TSR2 homolog OS=Danio rerio GN=tsr2 PE=2 SV=1	[more]
TSR2_MOUSE	2.5e-10	28.88	Pre-rRNA-processing protein TSR2 homolog OS=Mus musculus GN=Tsr2 PE=1 SV=1	[more]
TSR2_XENLA	3.2e-10	29.32	Pre-rRNA-processing protein TSR2 homolog OS=Xenopus laevis GN=tsr2 PE=2 SV=2	[more]

BLAST of Cla013054 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LDZ8_CUCSA	9.9e-83	81.35	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G889860 PE=4 SV=1	[more]
B9MZI7_POPTR	9.1e-52	58.38	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s04940g PE=4 SV=1	[more]
U7E2V7_POPTR	1.5e-51	56.48	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0030s00320g PE=4 SV=1	[more]
A0A067JIA4_JATCU	3.8e-50	57.07	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23450 PE=4 SV=1	[more]
I3S1A5_LOTJA	2.5e-49	54.82	Uncharacterized protein OS=Lotus japonicus PE=2 SV=1	[more]

BLAST of Cla013054 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659132454\|ref\|XP_008466207.1\|	1.3e-83	83.42	PREDICTED: pre-rRNA-processing protein TSR2 homolog [Cucumis melo]	[more]
gi\|449436990\|ref\|XP_004136275.1\|	1.4e-82	81.35	PREDICTED: pre-rRNA-processing protein TSR2 homolog [Cucumis sativus]	[more]
gi\|566169539\|ref\|XP_006382739.1\|	1.3e-51	58.38	hypothetical protein POPTR_0005s04940g [Populus trichocarpa]	[more]
gi\|566259508\|ref\|XP_006389312.1\|	2.2e-51	56.48	hypothetical protein POPTR_0030s00320g [Populus trichocarpa]	[more]
gi\|743919531\|ref\|XP_011003790.1\|	1.9e-50	56.25	PREDICTED: pre-rRNA-processing protein TSR2 homolog [Populus euphratica]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR019398	Pre-rRNA_process_TSR2

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla013054	Cla013054	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla013054	Cla013054.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla013054.1.cds1	Cla013054.1.cds1	CDS
Cla013054.1.cds2	Cla013054.1.cds2	CDS
Cla013054.1.cds3	Cla013054.1.cds3	CDS
Cla013054.1.cds4	Cla013054.1.cds4	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR019398	Pre-rRNA-processing protein TSR2	PFAM	PF10273	WGG	coord: 17..96 score: 7.9
None	No IPR available	PANTHER	PTHR21250	UNCHARACTERIZED	coord: 9..184 score: 4.8
None	No IPR available	PANTHER	PTHR21250:SF1	SUBFAMILY NOT NAMED	coord: 9..184 score: 4.8