CmoCh01G009860.1 (mRNA) Cucurbita moschata (Rifu)

Overview
NameCmoCh01G009860.1
TypemRNA
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionSmall nuclear ribonucleoprotein E
LocationCmo_Chr01 : 6522914 .. 6531751 (+)
Sequence length450
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAACTCTTCTATTTCAGCTCATTGAAATTTCTTGAATCCCAACGAATTTACTCTAATTAATTGTTCTTGACCTTTTTTTTTCTTCCTTATGACCCTTGAAGCTTATGAAAGCTAACTTAGTTGTTTTCTCGAGAGATTCGTTAATATTTTGGTCAGAGTTAAACTTTTGGTCGATCCACCTGTCACAATATCTCACACTTAAAGGTGTGGATAAATATGAAACTATTATGGTAATACAAGGACAACTGAAATAATGAACCGTTCTACTCAAATAAACTATTCCTTACTGACTTAACAACTTTGACTAATTTTGTCTAAAATAAGTGGCACTAATTTTGACACCACAATGGTCGACTGAATCAATCTTGGGCAACTTGTTGAGGGCAAACCAAATCGATCTTTGGCCTACAACTTAACGGCTCAGCCTTTCAAGGTTTGACCGAGCCCTTAGCACCGCACTTCATGAATTAGGGTGAGTTTGATCTTGTCTCTCCTTGGGTCATAGGCTAACCCATCTCAATAGTCTCAATAATGTGGGCGGAGACAGAAATATAATCTTTTTCTCATCCTCTTTTAACTGAGAATGAGAAATCTCTTTTCGTTGGTTTCCGTGTTTAAAAAGGATTTTTTTTTTCTTTTTTGAAAATGAGTATTTTTAAAAAATAGTTTAAAGACGAGGTAATTGAACGGGTATTTATATTATTATTATTATTATTTTTTTTTATTTTACGGAATATGTACCGTAAACCAAAACCTCTTTTCACCCTTTTCCTTCGTTGGAGTGAAGTGGCTGCTTAGCTTAAACCGGAACCAAACTCCCTTTGCCCTAACAGAAGTTTCAATCTATACCACAGCTGTGAGCTGCAATTTGTGAGCGAAAGCGGAGAAGTTAGGCCTTCGATTTCCTTTTTCCCCGTCCTTCAGAAATCTTTTCGATTCAGTCCCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATCGTACCTTCTCATCTCAATTCCTTCTTCTTCATTTCATTCTCCATTTTCTATCATTTTTCTGCGTCTTTCACTTACACATTTTATTTCTCTTTCAATTGATGTTGGTGCGCCTTCAGAACTTGATTTTCAGGTTCCTTCAAAGTGTAAGTTCCTTTTCAGCTTCATTTTGTTTATAGTTTTTCATAGTGAAATTGATGTTTTCTATCTCTGATTTTATTCACGTAATCTTCACGCTCGAAATTTATACAGAAAGCTCGGATTCAGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGTAAGTGGTCCTTTTCTTTGAGAAACTATCGTGCTAATTAATAGTTTTTGTTTTTAAAATGTACGTTTAAATGCTATAAAAGCTTACTAGGGTTTAAGTTTCAAATGTTGAATCGTCATCTTTTTTCTTTTCCTAAAGATTTTTCTCCAACCAAGGTAAACTAAGAACGTTGCAATCTAGATAAAATGGAAGTTAGATTAGTGAAATTGGTTATCATTTGATATATAAAACATTCTGTGGAGGTATTGAAATCATCAAGCATACTAAGTTAGCTTGAATTAATCAGTCATGCCACAGTAACAACTCTCATTGTTTGATGGGGTGAAATGTTGGGAGGTATAAAGGGTTGTGTATCTTCAAATTTACTCTCAAGAACAATAGAAACTAGTAAAAGTAGTTGAGAAGAGGAGAAATGACTCTAAAATTTGGATAGGTTCGCTTGTTTTCTGTTGATTTAATATTTCACTGTATAGAAAAGACAATTGTTTTTTTTTCCTTTTTGTAAAGGAAAAGAGACAGAAAAGCAAAAATATATGAAGATACACATAAAATTGTGCTTCCCTTGGTTGTTTTGATTACACAATTCAAAATCAGCTTTCATTGAAAGAAAAAAATGCAAAAGAAAATCAGTTTATATTATTTTCTTCTGTATTAGCGTAGTTGTACGTCTATGTTGGCCCCTGGAGGTTAGTAGTCGTAGTGCGAAAAATAAGTCTTTCTTCATTAGATTAGTTAAGGTTTTCTGGGTTTCGTAAAGTTAAGTTAGAAGAAGAAAGTTCTTCCTTCTTACGTAAGATTGGTATGGTAAGTTGTTTGGGTTGGAGAAAGAAAGCTTTGTTGGAGCTTCTGCAATGTCTGATGGCCCAGAATTTCCTTTGGAGATAGTATGCTTTGAAATTCCTTCGTAGGAAGAACTGGGATGTCATTTGACATATTTGGAAGAGCAAGAAAGTTACTGGAGAAATATATGTTTGAGCTAGGACTATGGAGGTTAAAATTTTACCAATTCATTAGGTTGACATTCGTGGCCTACTAAATTTAATCCTTCAATTAAAGATTATTAAGGTCTTAAGATCTCTTTAACTGCAACATGTCTTCGGTGTTCCTGTAAGAAGAGTCTAGGTAAAAAAGAAAATGGCACTAGAAGAAGACTAGACAGAAATCTTTGGCTTCATTTGTCTTCGGTATCGTCGCGACTTTCGAAGCCGCCATCTTGGTGTCACCTTCGCTGCCTCCCTACACAGTCGCGACTTTTGGAAGGTGAAGAGTCGCGACTTTTAGAAGGTGAAGAGTCGTGACTTCTAGCATCGTGCCAAGGTGGGGAAGACGAAGAGTCGCGAGCAACATTCTGAAAGACGAAGAGTTGCGACTTCCGGCGCCACGAATCGCTACGACTACCGCTCCTCTGACGACAACCACGATCATAAAAGACCACAATGAGGCCGCCCCTCCGATCCCACACTTGCACAGCCTGCGAGCCACTCCTCCGATTGAAGAAGACCATGACGACAGTTGCTCCTCTGACTTTCGGCACCAGTAAACGTGTACAACTGCTCTTCCTCCTCCGACGCCTGTATAGCCCACGATGACAGTCGCCCCCTCGACAGCCACCGATAAAAAGCCTAGAAATCCATCTCGGAAGATTTCCTCCTTGGTTTTTCAAAGAGTAGTTGGGTTACTGTTTTTGCTTGATTGTACCTCCGACAACAAGGATTTTGCATCAACCAGCAATGATTTCATTTTGCATCAACCAGCAATGATTTCATAACCAACAAAGATTTTGAATCCATTTGACAGTACCTCTGACCCGTGGCACCACACCAAATACTCCAGAGGATTTTGAATCCATTTGGACAGTAACCTTTGACCCATGGCACTGCACCAAATACTTCAGAGATTCAAAACGAAAACTTATGCAATTGAGTTAGACGGGAACAAGAATCAAGCTATTAGAAATAACAGAGGCAACTTTTTTCCTATCATTGAAATGAGGCTTTTTCCAATGGCTGAAAACATCCACTACCATTGGCTCCACTAAACCAAAAATTCAAGGAGAAACGTTTTTCGGAACAGATCATTGGATAGAAAAACTCACAAACAAGAAGGGTATTATTGCTGAAATCTCATTGCACCATGGAAATGGAGGTATAAACAAATTGTTTGTCCTAGTGGGCGAAGAACGGATAGGTTGGATAGCTTTTTTCGATCTTATTGGAAACTATTTCTTGCTGTCCACTAAAATACTATACCATCAACTAAACTCAAGATCCTAGAGTAGAAGACACCACAATCATAACCATCGACCTACACAACCCTTGCATGTTACTAAAAAGTTGTCACAAATGCTAGAAAATAGAAAGAGAAACATACCTTCCAATTCTAAATAAAAAAGCAAAGACGATCAACAACGTTTTTTCCTTCCCCCCATTAATACTGTATGGGCTTCGAATTCTAAATAAAAAAGCAAAGACGATCAACAATGAGTTTTCCCTCTCTCCCATTAATACTGTATGGGCTACGATAGTGATTGTCATTTAGAAACATTTTTACGGTGACTGATTTACGATAAACAGGAGCATCTAATCTATGCTCAATGACTCCTGCCAACTAAACCCCTACAAAGTTGACAAGGCAATTCTCCGTTGCATGTCAAAGGAGCAAGTATCATTAGTTTGAGTTTGTAATAAAAAAGGTCAGCAAAAAGTTGAAAACTATGTTGTGAAAGTAGAACCATGATCTGATGAAAAGCACTTGTTTACAACAACCCATGGAAAGTAGAATGAGATAATGATCAGATAGGTTTATTCAGTCTTTGAACACCAAAGTTACTGAATTTTCCAAAGAGGCCTTTTGTGGCAAGAAATCTATCGATGAGTGTCAAGGTGGGTGGAGACCTGTTGTTTGACCATGTATAGAGTCCATTATTGAGGGGAAGATCAATGAGTTCGATTTCTCTTATGAAATTGTTGAAGTGTCTCATGCTTTTGGTGGCTTTTCCACTGGATTTTTCATGTGCCCATCGAGAGGTATTGAAATCTCCCGCCAAACGCCAATTCTCTATACATAAGCATGATAGGTCCTGTAATTCCTGCCAGATAGATGTCTTTCTTGAAACCTACCGGGGCCATAAATTCCTGTATAATTATTAGCCAGTGTAATATGGTTAGGGTGTATAAGCCTTTAGTGACTTCTGAAATGGTCAGAGTTGGGTCATTCCTCATGATTAAGATCAAGCCAAAGATGACCAACCAATATGTTTGGCACTCCATAGAGATTTAACTGTCTAGCGATCAACATAATTCAATTTTGTTTCTTGAAGAATAACCCTAGTGAGATTGTATTTGTGGAGGAAGGACTTGATTAGAGCTCTCTTTTGTGAATAATCATAAGAGGTATTGACCTCCCAATTGTGACTTGCCCGATTTCTCATAATTGATGTTTGAAAAGAGACCAACAATCTCTCTATTCAGTTTACTCAATTTCTTGGCCATAGTGGGCTTCTTTTTCCTAGATGGAATAGCCATGATGCACCTGTGGTGTTCTTTTAGACATGGTGCCAAGATTTGGATGGCTCTTGTTGGTGAGTGTTGCTAATGTTGGGGTGACCTCTTCTACCTCTGTTTCATCCTGCTTCTCTTGTAAAAGAGTGCCAAGCGGATGCGGGTGATCTTTAGCAACGGGTGAGAGTTGTTCGCCTTATCCGCAGTGGGGGATGGTGGGGCGGTGGAGAGGGATAAGGGGTTGGATGGATATTCGTCATCTAATTCTTGGTCAATGCCAATCGTGGAGTATTTTGTTCTTGGGACGAGGAAAGTTTTTGGTTATTTATGATGATGACATATTTTCTGGTGATATTGTCACAACTTGCGGGTCGGGGTCGGGGATAAGAAGTGGTGTAGAGGATGGGGTTTTGGAGATTGGTGGATAAGAAGTGGTGTAGGGATGGGGTTTTGGAGATTGGTGGATAAGAAGTGGTGTAGAGGATGGGGTTTTGGAGATTTTGGTGGAAAGTAGGGTGAGGGGTTGGTGGCCTTTGGTTTATGTGGGGAGACTGAGTTTATGGGGCATGGTAGATGGGGGGGTGGAGGAGTATGGTTTAGTTGGGGGATTGACCTTCTTTTATAGGAGTTGGCTTGGAGGGTAGGGGGATGTCCATGGCGGATGGGATTGGTCATTTACCTTTTTGGGGCTTTGTGGTATGACCATAGATTCTGATATGTGTAAATTTGGTGTTGAGTCTGGTTGTACTTGAGAGGTCCCTTTAGGTGTTGTTTCTCGGTGGTTTGACCAATGGTGTGGTTCAAGAATGCCGCAAGAAATATCTATAATAAACTCAGTATTCTTTGAGGTACAAAATCTTTTCCGTGCTTGTTTAGTGCACTAGTAGCCAATCATAACATCAACAAATGGTTCTTCATTAAAGGAAGGCTCGGTCAATATAATGACCATAAGGGGAATCTTGGAGGAAGATGATGGTATTGAGACTTTTGCTTTCATAATGGTGGCTTCCATAAGGTCTATTCTTGATGAGGTTTTTTTTAGCCATCTCAACAAAACCTCCACGGGCATCTCCCATGTGTTTCAAAGTTTCAATGTCCCAACGATTGAGAGGCAAATTTTTTATTTTAATCAACCTTCATGTGAGGGAACCACGGGATCGAGGGAACCACGGGATCAATCAGGTGCTTTTCACCCACCAGACTATGGTTCTATTTTCCCAACGTAGTTTCCAACTTTTTGTTAGTCTTTTTTATTTTACAACCTAATGAGACTTGCTCCTTTGACCTGCAATAGAGAATCGCCTTGTCTACTCTACGGAGTTTTAGTCGGCAAAAGTCATTGAACATGAATTGGATGCTCTTGTTTATCATAAACCAGTCATCGTGAAAATGTTTTCGTGTGACAATCACCATCGTATCCCATACAGTATGAATGGGGGAGAGGGGAAACTTGTTATTGATCGTCTTTGTCTTTTTGTTTAGAATCGAAAGGTATGTTTCTACACTGTCTTTCTATTTTCTGGCATTTGTGGCGATTTTTTAGTAATAGGTAAAGGTTGTGTAGGTTGATAGATGTGTTTGTGGTTTTGTCTTCTAGTCTGAGATCTTGAGTTTAGTTGATGGTCTGGTATTTTAGTGGACAGGTCTGTCGTCTAACTCAATTGCATAGGTTTTCCTATCAATTACAGATTTGAATCTCTGAAGTATTTGGTTAGTGCCATAGGTCAAATGTTAGGATTCAAAATCCTCTAAGTATGTCATGGGTCAAATGTTAGGATTCAAAATCCTCTGAGTATGCCATGGGTCAAAGGTTAGGATTCAAAATCCTCTAAGTATTTGGTATGGTGTCATGGGTCAAAAGTTACTGTCCAAATGGATTCAAAATCCTCTGAAGTACTTGGTGTGTGCCATGGGTTGGGTTACTGTCCAAATGAAATTCTGGCTGGTTGATGCAAAATTATTGCTGTCGAAGGTACAAAGCAAAAACAGCAACCAGATGCTCTTTGAGAAATCGAGGAAATCTTCAGAGATGGATTTCTAGGTTTTTTATCGGTGTTGTCGTGGGCTGTGCAGGCATCGTCGGAGAAGCGGCTGTACACGTTTATTAGCGTCGGAAGTCAGAGGAGCGGTTGTCGTCGTGGTTTTCTTTAGTCGGAGGAGCGGCTTGCGGGCCGTGCAGGTGTGGGATCGGAGGGGCGACTGTCATTTTGGTCTTCTACGGTCGTGGCTGTCGTTGGAGGAGCGGTAGTCCCAGCGATTCATGGCGCCAGAAGTTGCGGCTCTTTGTCTTTTGGAATGTTGCTCGCGACTCTTGTCTTCCCCACCTCGGCACGATGCAAGAAGTCGCAACTCTTCGTCTTCCAAAAGTTGCAACTCTTCGCCTTCCAAAAGTTGCGACTTTGTTGGGAGGCAACAGCGACGACATCAAGACGGCGGTTTTGGAAGTCGTGACTCTCTCTACACCTAAAAAAAAGTTTTCTGTCCCTATGGCATTGTTAAACAAAGCAGACTCATTGACTTGGCTCCCTAGTGCTAACGGGGTCTTTTCTACAAAATCCTTGATGATGGACATGGGAAAAAAGTAGAAGCAATAAATCCCACCCTAGCAAAGACGGAATGGAAAGGATGTCAACCTAAAAAGGTGAAGTTCTTCCTCTGGGAAATAGACCTAAAGCCGTTAGCACAAGTGAAAATCTTAAAAAAAAAAAAAAAAAGAATGTCTTACATCACTCTTTCTCCAAATTGGTGTCCATTATACAAGAAAGAAAACGAATCACAAAACCACTTGTTTATGCAATGCACATACACTCAGAATTTCTGGATAAAGATTCTCAATATATTCGGATGACATCTCATATTTCTTAGGGAGATAATGATTTTTTGGATATAGCCTTAACGTATCGCCCTTTCAAGAATGCAAAAGATACCCTTTCAAGAATGCAAAAGACCTATTATTGGAAAAACCTCATCATGGCTTTCTTTTGGAATAGGTGGAAAGAAAGAAATTAGAGAATATTTGTTTACCAAGCTATATCTTGGTGTAATCTGTCTAATATTTTTACTTTCTATAATTATACCTCCTTCATTGATCTCAAATACCTAGATAAGGACTCGATGAGAAAATACCTGGTTCAGGTGACCAAACCCTAGCATCAACCAAACCCTAAGCATCAACCAAAGAGCCAACATGAACCAGGGACAGGGAGAGAGCTCAAAAGTACCATCCAGTCCTTAATTTCCTCTTTCTGTAGCAATCTTCTAAAAACAAGACTCCACAAGCGAGTTGAAACATCTTAGAATTCCAAAACCAAACCTTGTGGTGAAGAAGAAATACTGAGCAAACGAGGGAATTGAAGCTTCAAAGGAGAGTACTAAGCCATAGGTCTTGCCGAAAAAGAATTTCTACAACCATTGACTTCTAAGACTCCATTTCCTTTCTGCCTTTGGATGCATAGCCTTTAAACCGTGAATGCTAGTAGTAACTTCACGGCAAAAGGTTCGGCAAAAATTTAGGTCTCGACTGATAATCATTTGGTGACTTTCTTTTGTTTTGTTATTTACTTTCCAAAATGTTTTTCAAAACCCGAGACAAGTTTTCAAAAATGAAATAATTATCAATTGGGTCTACTTATGAGTTGTACTTCCGTAGGGCTTTGATGAATATATGAATTTGGTTTTGGATGATGCCGAGGAGGTCAATGTGAAGAAGAAGAGCAAGAAGAGTTTAGGTTTGTCTCATCCTCTTCGGTATCCAAATCTTTCTGTGATTAAACACAGACTAAAAAGTTGTTTTGTCCTCCACATTTTCAGGGAGGATATTGCTCAAAGGAGATAACATAACTCTGATGATGAACACGTAAGCTCCTGAAGCTCTCTCTTTCACCGTATAATTCTTCTCTTTGAAAAGTTCATGAATGATATAATCATATGCAAAATTACAGGGGGAAGTGATGGACATTTTTTGGTGCACCCATAATAGAGATAGCGAAGTCAGCCCTTTCATGTTGAAACTTGAAGGCCTTGTGTTACCATAG

mRNA sequence

ATGCTTAAACCGGAACCAAACTCCCTTTGCCCTAACAGAAGTTTCAATCTATACCACAGCTGTGAGCTGCAATTTGTGAGCGAAAGCGGAGAAGTTAGGCCTTCGATTTCCTTTTTCCCCGTCCTTCAGAAATCTTTTCGATTCAGTCCCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATCAACTTGATTTTCAGAAAGCTCGGATTCAGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGGCTTTGATGAATATATGAATTTGGTTTTGGATGATGCCGAGGAGGTCAATGTGAAGAAGAAGAGCAAGAAGAGTTTAGGGAGGATATTGCTCAAAGGAGATAACATAACTCTGATGATGAACACAGATAGCGAAGTCAGCCCTTTCATGTTGAAACTTGAAGGCCTTGTGTTACCATAG

Coding sequence (CDS)

ATGCTTAAACCGGAACCAAACTCCCTTTGCCCTAACAGAAGTTTCAATCTATACCACAGCTGTGAGCTGCAATTTGTGAGCGAAAGCGGAGAAGTTAGGCCTTCGATTTCCTTTTTCCCCGTCCTTCAGAAATCTTTTCGATTCAGTCCCCATGGCGAGCACCAAAGTTCAGAGGATTATGACCCAACCCATCAACTTGATTTTCAGAAAGCTCGGATTCAGATATGGCTTTTTGAGCAGAAAGACCTGAGGATCGAAGGCCGAATCATTGGCTTTGATGAATATATGAATTTGGTTTTGGATGATGCCGAGGAGGTCAATGTGAAGAAGAAGAGCAAGAAGAGTTTAGGGAGGATATTGCTCAAAGGAGATAACATAACTCTGATGATGAACACAGATAGCGAAGTCAGCCCTTTCATGTTGAAACTTGAAGGCCTTGTGTTACCATAG
Homology
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BLAST of CmoCh01G009860.1 vs. Swiss-Prot
Match: RUXE_MOUSE (Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19
Identity = 44/65 (67.69%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+
Sbjct: 28  RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 87

Query: 130 MNTDS 135
            +  +
Sbjct: 88  QSVSN 92

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BLAST of CmoCh01G009860.1 vs. Swiss-Prot
Match: RUXE_HUMAN (Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19
Identity = 44/65 (67.69%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+
Sbjct: 28  RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 87

Query: 130 MNTDS 135
            +  +
Sbjct: 88  QSVSN 92

[Close]
BLAST of CmoCh01G009860.1 vs. Swiss-Prot
Match: RUXE_CHICK (Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19
Identity = 44/65 (67.69%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+
Sbjct: 28  RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 87

Query: 130 MNTDS 135
            +  +
Sbjct: 88  QSVSN 92

[Close]
BLAST of CmoCh01G009860.1 vs. Swiss-Prot
Match: RUXE_BOVIN (Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19
Identity = 44/65 (67.69%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+
Sbjct: 28  RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 87

Query: 130 MNTDS 135
            +  +
Sbjct: 88  QSVSN 92

[Close]
BLAST of CmoCh01G009860.1 vs. Swiss-Prot
Match: RUXE_PIG (Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19
Identity = 44/65 (67.69%), Postives = 57/65 (87.69%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           ++RIQ+WL+EQ ++RIEG IIGFDEYMNLVLDDAEE++ K KS+K LGRI+LKGDNITL+
Sbjct: 28  RSRIQVWLYEQVNMRIEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLL 87

Query: 130 MNTDS 135
            +  +
Sbjct: 88  QSVSN 92

[Close]
BLAST of CmoCh01G009860.1 vs. TrEMBL
Match: A0A0L9TF55_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan627s009000 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 5.2e-26
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKK+LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLM 83

Query: 130 MNTDSEVSP 139
           M+T   +SP
Sbjct: 84  MSTGYVLSP 92

[Close]
BLAST of CmoCh01G009860.1 vs. TrEMBL
Match: G7IMA2_MEDTR (Small nuclear ribonucleoprotein OS=Medicago truncatula GN=MTR_2g104440 PE=2 SV=1)

HSP 1 Score: 124.8 bits (312), Expect = 8.9e-26
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK+LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLM 83

Query: 130 MNT 133
           MNT
Sbjct: 84  MNT 86

[Close]
BLAST of CmoCh01G009860.1 vs. TrEMBL
Match: A0A151SRH5_CAJCA (Small nuclear ribonucleoprotein E OS=Cajanus cajan GN=KK1_003688 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.2e-25
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKK+LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLM 83

Query: 130 MNT 133
           MNT
Sbjct: 84  MNT 86

[Close]
BLAST of CmoCh01G009860.1 vs. TrEMBL
Match: A0A0E0AQV1_9ORYZ (Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-25
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE+NVKK ++KSLGRILLKGDNITLM
Sbjct: 15  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITLM 74

Query: 130 MNT---DSEVSPFMLK 143
           MNT   D  + P+ LK
Sbjct: 75  MNTSIRDMALLPYCLK 90

[Close]
BLAST of CmoCh01G009860.1 vs. TrEMBL
Match: A0A0E0GTP6_ORYNI (Uncharacterized protein OS=Oryza nivara PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.5e-25
Identity = 63/76 (82.89%), Postives = 68/76 (89.47%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEE+NVKK ++KSLGRILLKGDNITLM
Sbjct: 15  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITLM 74

Query: 130 MNT---DSEVSPFMLK 143
           MNT   D  + P+ LK
Sbjct: 75  MNTSIRDMALLPYCLK 90

[Close]
BLAST of CmoCh01G009860.1 vs. TAIR10
Match: AT2G18740.1 (AT2G18740.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 114.0 bits (284), Expect = 7.9e-26
Identity = 55/63 (87.30%), Postives = 60/63 (95.24%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KK ++K LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKNTRKPLGRILLKGDNITLM 83

Query: 130 MNT 133
           MNT
Sbjct: 84  MNT 86

[Close]
BLAST of CmoCh01G009860.1 vs. TAIR10
Match: AT4G30330.1 (AT4G30330.1 Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 114.0 bits (284), Expect = 7.9e-26
Identity = 55/62 (88.71%), Postives = 60/62 (96.77%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRI GFDEYMNLVLD+AEEV++KKK++K LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRITGFDEYMNLVLDEAEEVSIKKKTRKPLGRILLKGDNITLM 83

Query: 130 MN 132
           MN
Sbjct: 84  MN 85

[Close]
BLAST of CmoCh01G009860.1 vs. NCBI nr
Match: gi|920682269|gb|KOM29041.1| (hypothetical protein LR48_Vigan627s009000 [Vigna angularis])

HSP 1 Score: 125.6 bits (314), Expect = 7.5e-26
Identity = 62/69 (89.86%), Postives = 66/69 (95.65%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKK+LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLM 83

Query: 130 MNTDSEVSP 139
           M+T   +SP
Sbjct: 84  MSTGYVLSP 92

[Close]
BLAST of CmoCh01G009860.1 vs. NCBI nr
Match: gi|357455361|ref|XP_003597961.1| (small nuclear ribonucleoprotein [Medicago truncatula])

HSP 1 Score: 124.8 bits (312), Expect = 1.3e-25
Identity = 62/63 (98.41%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKK+LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKTLGRILLKGDNITLM 83

Query: 130 MNT 133
           MNT
Sbjct: 84  MNT 86

[Close]
BLAST of CmoCh01G009860.1 vs. NCBI nr
Match: gi|1012346234|gb|KYP57426.1| (Small nuclear ribonucleoprotein E [Cajanus cajan])

HSP 1 Score: 124.4 bits (311), Expect = 1.7e-25
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVN+KKKSKK+LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNIKKKSKKTLGRILLKGDNITLM 83

Query: 130 MNT 133
           MNT
Sbjct: 84  MNT 86

[Close]
BLAST of CmoCh01G009860.1 vs. NCBI nr
Match: gi|255629853|gb|ACU15277.1| (unknown [Glycine max])

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-25
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKS+K+LGRILLKGDNITLM
Sbjct: 24  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLM 83

Query: 130 MNT 133
           MNT
Sbjct: 84  MNT 86

[Close]
BLAST of CmoCh01G009860.1 vs. NCBI nr
Match: gi|734341007|gb|KHN09645.1| (Small nuclear ribonucleoprotein E [Glycine soja])

HSP 1 Score: 123.6 bits (309), Expect = 2.8e-25
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 

Query: 70  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSKKSLGRILLKGDNITLM 129
           KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKS+K+LGRILLKGDNITLM
Sbjct: 34  KARIQIWLFEQKDLRIEGRIIGFDEYMNLVLDDAEEVNVKKKSRKTLGRILLKGDNITLM 93

Query: 130 MNT 133
           MNT
Sbjct: 94  MNT 96

The following BLAST results are available for this feature:
BLAST of CmoCh01G009860.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RUXE_MOUSE1.8e-1967.69Small nuclear ribonucleoprotein E OS=Mus musculus GN=Snrpe PE=1 SV=1[more]
RUXE_HUMAN1.8e-1967.69Small nuclear ribonucleoprotein E OS=Homo sapiens GN=SNRPE PE=1 SV=1[more]
RUXE_CHICK1.8e-1967.69Small nuclear ribonucleoprotein E OS=Gallus gallus GN=SNRPE PE=3 SV=1[more]
RUXE_BOVIN1.8e-1967.69Small nuclear ribonucleoprotein E OS=Bos taurus GN=SNRPE PE=3 SV=1[more]
RUXE_PIG1.8e-1967.69Small nuclear ribonucleoprotein E OS=Sus scrofa GN=SNRPE PE=3 SV=1[more]
BLAST of CmoCh01G009860.1 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0L9TF55_PHAAN5.2e-2689.86Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan627s009000 PE=4 SV=1[more]
G7IMA2_MEDTR8.9e-2698.41Small nuclear ribonucleoprotein OS=Medicago truncatula GN=MTR_2g104440 PE=2 SV=1[more]
A0A151SRH5_CAJCA1.2e-2596.83Small nuclear ribonucleoprotein E OS=Cajanus cajan GN=KK1_003688 PE=4 SV=1[more]
A0A0E0AQV1_9ORYZ1.5e-2582.89Uncharacterized protein OS=Oryza glumipatula PE=4 SV=1[more]
A0A0E0GTP6_ORYNI1.5e-2582.89Uncharacterized protein OS=Oryza nivara PE=4 SV=1[more]
BLAST of CmoCh01G009860.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G18740.17.9e-2687.30 Small nuclear ribonucleoprotein family protein[more]
AT4G30330.17.9e-2688.71 Small nuclear ribonucleoprotein family protein[more]
BLAST of CmoCh01G009860.1 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|920682269|gb|KOM29041.1|7.5e-2689.86hypothetical protein LR48_Vigan627s009000 [Vigna angularis][more]
gi|357455361|ref|XP_003597961.1|1.3e-2598.41small nuclear ribonucleoprotein [Medicago truncatula][more]
gi|1012346234|gb|KYP57426.1|1.7e-2596.83Small nuclear ribonucleoprotein E [Cajanus cajan][more]
gi|255629853|gb|ACU15277.1|2.8e-2596.83unknown [Glycine max][more]
gi|734341007|gb|KHN09645.1|2.8e-2596.83Small nuclear ribonucleoprotein E [Glycine soja][more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR001163LSM_dom_euk/arc
IPR010920LSM_dom_sf
IPR027078snRNP-E
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Cellular Component
TermDefinition
GO:0005681spliceosomal complex
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
cellular_component GO:0005681 spliceosomal complex
cellular_component GO:0019013 viral nucleocapsid
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
CmoCh01G009860CmoCh01G009860gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
CmoCh01G009860.1CmoCh01G009860.1-proteinpolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh01G009860.1.exon.1CmoCh01G009860.1.exon.1exon
CmoCh01G009860.1.exon.2CmoCh01G009860.1.exon.2exon
CmoCh01G009860.1.exon.3CmoCh01G009860.1.exon.3exon
CmoCh01G009860.1.exon.4CmoCh01G009860.1.exon.4exon
CmoCh01G009860.1.exon.5CmoCh01G009860.1.exon.5exon
CmoCh01G009860.1.exon.6CmoCh01G009860.1.exon.6exon
CmoCh01G009860.1.exon.7CmoCh01G009860.1.exon.7exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
CmoCh01G009860.1.CDS.1CmoCh01G009860.1.CDS.1CDS
CmoCh01G009860.1.CDS.2CmoCh01G009860.1.CDS.2CDS
CmoCh01G009860.1.CDS.3CmoCh01G009860.1.CDS.3CDS
CmoCh01G009860.1.CDS.4CmoCh01G009860.1.CDS.4CDS
CmoCh01G009860.1.CDS.5CmoCh01G009860.1.CDS.5CDS
CmoCh01G009860.1.CDS.6CmoCh01G009860.1.CDS.6CDS
CmoCh01G009860.1.CDS.7CmoCh01G009860.1.CDS.7CDS


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 74..129
score: 4.3
IPR001163LSM domain, eukaryotic/archaea-typeSMARTSM00651Sm3coord: 65..131
score: 2.6
IPR010920LSM domainunknownSSF50182Sm-like ribonucleoproteinscoord: 65..134
score: 7.48
IPR027078Small nuclear ribonucleoprotein EPANTHERPTHR11193SMALL NUCLEAR RIBONUCLEOPROTEIN Ecoord: 69..136
score: 5.2
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 69..131
score: 4.0