CmoCh17G006390 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh17G006390
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative
Location	Cmo_Chr17 : 6665149 .. 6667244 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGCTATTATTCTTGATTTAATCCGTGTTCTTCGTGTCTCCAAAATGGCCGTCAATGGATGTTCTCGCATCTGGAACTCGATTTTCCCATCGCTTTTGCTGCCACCAGATCTGTACGCTTTATACTCTGAAACGATTCTGCCTTTTCCTCCTCTTCATCGCTCTCTTCTCGATCATCGCCATCGCCATCGCCGCATTGCCTGTAATCTTCCTATTAAAGCCTCGACAGCCGATCTTTTCTCTCGAATCACTGCGATTGGATTGGTACAACATTAGCCTCAACTCTGCCTCTCCATTTATTTCTTCGGTTTTCACCTTGACTCTCAACTCTCGAAACCCTAACAAAATCGGCATTAAGTATAGTCCGTCGAGGCTTCTCCTGATCCACGATGGAAACGCCATGATCGGAACCATACGAGTCCCCGAAGTGTTCCAGCCCGCTCGTAGTGACGATCGGAGTGTTCGAACTCGTCTTCTGCTGCATCGATTCAATGTCGATTTGTTCGATGCGACGTCAGAGTTTGTTGAGATGAAAATCATTGGCGATGTTGGTGTAGAGCTGTTTGTGCTTCATATGGCTGTGATCAAGATGAAGGTAAGGTTTATTTGTTATTTGCATTCAACTCTGGAGCTTCCATGGAAGAATTTGCTGTGTTGATTTTGAAGAATTTGTCTGTAAATTAATTCTCCTATTGCGGATTGAATTGTTGAGGATTTTGCTGTAGGTTGCTCTGAACTGCAATGTGGATGTTCATTACAGAGGGCTTAATTTCAGAGAACAATTACTCGGCAATGGAGCAACCGTTGCAAAAGCTTTGGTACGCTCATCTTCCTCTCCCCCTAACTATATATTAAGCTTATGTTTCAATAAATGATCCTGAGTTTATAACAAAAGAATACTGTTTGAGGTGGTATGCTCAAAGTGGACAATATCATATCATTTTGTACAGTCGTGTTCGTCTATCATGGTATCAGAGTCATACCTTAAACTTAGTCGTGCCAATAGATTGGTAAATCCGACAATATCATACCATTGTGGAGAATCGTGTTTGTCTAACATGGTATCAGAGTCATACCCTAAACTTAGTCATGCTAATAGATTGGTAAATCCTCACATATCGAACAAAGGACTCCAAAAGAAAATGAGGAGTCGAGCTCAATTAAGGAAAGACGTGCTTTGTTCAAGGGGAGGTGTTGGATGATGAAAGTCCGTTTATAATAAAATAATACTTTCTCCAGGTGTGAGGCTTTTTAGAGAAGCCCAAAGAAAGCCACAGGAGGTTATGCTCAAGGTGGACAATATCATACTATTGTGGAGAGTCGTGTTCATATGACTCGATAACTCAACCAATCTCGACTAAATCCAAATTATAAAAATTGGGTTGAGTTAGATCTTTTTTTGTTCGAGTTAGGTTGATTTTGGTTCGGTTTGTAGATTTATTATTATTATTATTATTTTTTTTTTTGTTAGAAAAATAAGGTAATAATCCAACCCAACCCACGGTACTCTTAAAATAATTAAGAATATTTAAGATTTGTAACCGATGTTAGTGACGACGAATTCCGACTTATAAATATTTGTTATTTAAACTTTATGATATTTTAGTTATTAATGTAATATGCATCGTAGTTAAGTACAATTTTTAAATAATTAAAAAAAGCAACCGGACAATCCAACCTATAGAAAATAGATGATTGGATTGGGTTGCGTTCTGAACTTTGTTCGTGTTTTTCGGGTCATCAACCCAAAATTTGAGAGAGTGGTTTTTTTTTTTTTTTTTTTTTTTTCTTGAACTCTAAAATCAATTATTTGTAAATAAATTATGATTATGAAGGAAATTAATTTACTTAGTCTCTTGATTTTCAGGATTCATTTCCTTCCAACTCCAACACAACGGCCACAAACTGTGGCGTCGCTTTTTACTTATGAAGATGCTTAACTCACTAATTAAGTAATTAATGGTTAAATGTTTTGTTTAATCTCTTTTTGGATTTGTTTGTTTTATTTATTAATTTCTTCATGACCCAATTATTTGGATTTTTCTTTTTCTAATGTATAATCCATTTTTTTAAACAACCTGCCAATCAAATCATCC

mRNA sequence

GTTGCTATTATTCTTGATTTAATCCGTGTTCTTCGTGTCTCCAAAATGGCCGTCAATGGATGTTCTCGCATCTGGAACTCGATTTTCCCATCGCTTTTGCTGCCACCAGATCTGTACGCTTTATACTCTGAAACGATTCTGCCTTTTCCTCCTCTTCATCGCTCTCTTCTCGATCATCGCCATCGCCATCGCCGCATTGCCTGTAATCTTCCTATTAAAGCCTCGACAGCCGATCTTTTCTCTCGAATCACTGCGATTGGATTGGTACAACATTAGCCTCAACTCTGCCTCTCCATTTATTTCTTCGGTTTTCACCTTGACTCTCAACTCTCGAAACCCTAACAAAATCGGCATTAAGTATAGTCCGTCGAGGCTTCTCCTGATCCACGATGGAAACGCCATGATCGGAACCATACGAGTCCCCGAAGTGTTCCAGCCCGCTCGTAGTGACGATCGGAGTGTTCGAACTCGTCTTCTGCTGCATCGATTCAATGTCGATTTGTTCGATGCGACGTCAGAGTTTGTTGAGATGAAAATCATTGGCGATGTTGGTGTAGAGCTGTTTGTGCTTCATATGGCTGTGATCAAGATGAAGGTTGCTCTGAACTGCAATGTGGATGTTCATTACAGAGGGCTTAATTTCAGAGAACAATTACTCGGCAATGGAGCAACCGTTGCAAAAGCTTTGGATTCATTTCCTTCCAACTCCAACACAACGGCCACAAACTGTGGCGTCGCTTTTTACTTATGAAGATGCTTAACTCACTAATTAAGTAATTAATGGTTAAATGTTTTGTTTAATCTCTTTTTGGATTTGTTTGTTTTATTTATTAATTTCTTCATGACCCAATTATTTGGATTTTTCTTTTTCTAATGTATAATCCATTTTTTTAAACAACCTGCCAATCAAATCATCC

Coding sequence (CDS)

ATGGATGTTCTCGCATCTGGAACTCGATTTTCCCATCGCTTTTGCTGCCACCAGATCTGTACGCTTTATACTCTGAAACGATTCTGCCTTTTCCTCCTCTTCATCGCTCTCTTCTCGATCATCGCCATCGCCATCGCCGCATTGCCTGTAATCTTCCTATTAAAGCCTCGACAGCCGATCTTTTCTCTCGAATCACTGCGATTGGATTGGTACAACATTAGCCTCAACTCTGCCTCTCCATTTATTTCTTCGGTTTTCACCTTGACTCTCAACTCTCGAAACCCTAACAAAATCGGCATTAAGTATAGTCCGTCGAGGCTTCTCCTGATCCACGATGGAAACGCCATGATCGGAACCATACGAGTCCCCGAAGTGTTCCAGCCCGCTCGTAGTGACGATCGGAGTGTTCGAACTCGTCTTCTGCTGCATCGATTCAATGTCGATTTGTTCGATGCGACGTCAGAGTTTGTTGAGATGAAAATCATTGGCGATGTTGGTGTAGAGCTGTTTGTGCTTCATATGGCTGTGATCAAGATGAAGGTTGCTCTGAACTGCAATGTGGATGTTCATTACAGAGGGCTTAATTTCAGAGAACAATTACTCGGCAATGGAGCAACCGTTGCAAAAGCTTTGGATTCATTTCCTTCCAACTCCAACACAACGGCCACAAACTGTGGCGTCGCTTTTTACTTATGA

Homology

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BLAST of CmoCh17G006390 vs. TrEMBL
Match: A0A0A0K6V0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448120 PE=4 SV=1)

HSP 1 Score: 356.3 bits (913), Expect = 2.8e-95
Identity = 180/231 (77.92%), Postives = 204/231 (88.31%), Query Frame = 1


Query: 1   MDVLASGTRFSHRFCCHQICTLYTLKRFCLFLLFIALFSIIAIAIAALPVIFLLKPRQPI 60
           MDVL   T FSHRFCC QICTLYTLKRFC FLLF+A+FSIIAIAIAALPVIFLLKPR+PI
Sbjct: 1   MDVLEFQTPFSHRFCCKQICTLYTLKRFCFFLLFLAIFSIIAIAIAALPVIFLLKPREPI 60

Query: 61  FSLESLRLDWYNISLNSASPFISSVFTLTLNSRNPNKIGIKYSPSRLLLIHDGNAMIGTI 120
           FSL S+RLDWYNI++ S SP +SSVFTLTLNS+NPNK+GIKYSPSRLLLI+D +A+IGTI
Sbjct: 61  FSLHSVRLDWYNITIRSGSPILSSVFTLTLNSQNPNKLGIKYSPSRLLLIYDESAVIGTI 120

Query: 121 RVPEVFQPARSDDRSVRTRLLLHRFNVDLFDATSEFVEMKIIGDVGVELFVLHMAVIKMK 180
           RVPEVFQPARS +R VRTRLLLH+ +VDL + T EFVEMKIIGDVGVELFVLHM VIKMK
Sbjct: 121 RVPEVFQPARSGERIVRTRLLLHQLDVDLLETTREFVEMKIIGDVGVELFVLHMKVIKMK 180

Query: 181 VALNCNVDVHYRGLNFREQLLGNGATVAKALDSFPSNSNTTATNCGVAFYL 232
           VAL C+VD+ YR LNFRE++LGNG +V KALDS PSNS T ++ CG+AFYL
Sbjct: 181 VALKCDVDIDYRKLNFREEILGNGESVGKALDSIPSNSKTMSSKCGIAFYL 231

[Close]

BLAST of CmoCh17G006390 vs. TrEMBL
Match: M5XE58_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015682mg PE=4 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 2.1e-34
Identity = 85/199 (42.71%), Postives = 124/199 (62.31%), Query Frame = 1


Query: 11  SHRFCCHQICTLYTLKRFCLFLLFIALFSIIAIAIAALPVIFLLKPRQPIFSLESLRLDW 70
           S   CC ++C  Y+ KR   FLL     +I+ + +AAL VIF++KP++P+FSLE++ LD 
Sbjct: 8   SSYLCCQKLCHAYSFKRCSFFLLLFVTLAIVFLGVAALIVIFIMKPQRPVFSLETVSLDL 67

Query: 71  YNISLNSASP-FISSVFTLTLNSRNPNKIGIKYSPSRLLLIHDGNAMIGTIRVPEVFQPA 130
           Y +   S S  F+SS  TLTLN++NPNK+GI YSPS L ++ DG   IGTIR+P   QPA
Sbjct: 68  YTLEAYSDSTLFLSSAITLTLNAQNPNKVGIWYSPSHLEVL-DGGLSIGTIRIPGFLQPA 127

Query: 131 RSDDRSVRTRLLLHRFNVDLF--------DATSEFVEMKIIGDVGVELFVLHMAVIKMKV 190
            S + SV  R+L    NV           D+     +MKI+GDVG  L+V H+ ++K+KV
Sbjct: 128 HSSNVSVEIRVLFPCLNVSQIVAEASLQDDSRKNMFQMKIVGDVGAHLWVFHIILLKIKV 187

Query: 191 ALNCNVDVHYRGLNFREQL 201
           AL C++ + Y+ L  + ++
Sbjct: 188 ALECDISIDYKELTMKNEV 205

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BLAST of CmoCh17G006390 vs. TrEMBL
Match: B9T4S1_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0044190 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 5.4e-30
Identity = 85/204 (41.67%), Postives = 123/204 (60.29%), Query Frame = 1


Query: 37  LFSIIAIAIAALPVIFLLKPRQPIFSLESLRLDWYNISLNSASP-FISSVFTLTLNSRNP 96
           L  II I I AL    +LKP++P FSL ++ +D Y +S+ S S  FISS  +L LN+ N 
Sbjct: 17  LKKIIVIGILALAFFLILKPQEPKFSLSTIEVDSYRLSVYSGSSLFISSNVSLILNAINH 76

Query: 97  NKIGIKYSPSRLLLIHDGNAMIGTIRVPEVFQPARSDDRSVRTRLLLHRFNVDLF----- 156
           NK+GI+YSPS L L + G   IG +++P  +QPA SD+  V T++ LH  NV        
Sbjct: 77  NKVGIRYSPSCLNLYYHG-IQIGVVKIPGFYQPANSDNVGVITKISLHCINVSQIINEGF 136

Query: 157 ---DATSEFVEMKIIGDVGVELFVLHMAVIKMKVALNCNVDVHYRGLNFREQLLGNGATV 216
               A+ + V+MK+IGD+ V+L +LH+ + KMKVAL C++ ++Y  L F    L N   V
Sbjct: 137 LQKKASKKVVQMKLIGDIRVQLRLLHLTMPKMKVALECDIGINYAELPFENYELFNKEVV 196

Query: 217 AKALDSFPSNSNTTATNCGVAFYL 232
            + L S P NS + + NC +A Y+
Sbjct: 197 QEHLASLPVNSGSFSKNCTLALYI 219

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BLAST of CmoCh17G006390 vs. TrEMBL
Match: B9N7H4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s16410g PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 7.1e-30
Identity = 85/196 (43.37%), Postives = 124/196 (63.27%), Query Frame = 1


Query: 14  FCCHQICTLYTLKRFCLFLLFIALFSIIAIAIAALPVIFLLKPRQPIFSLESLRLDWYNI 73
           FCC       + K   LF+LF  LF  +AI IAAL V+F+LKP++P FSLE++R+D Y +
Sbjct: 11  FCCPAFHNASSFKTCFLFVLFFFLFLFVAIGIAALVVVFILKPQEPRFSLETIRVDSYKL 70

Query: 74  SLNSASP-FISSVFTLTLNSRNPNKIGIKYSPSRLLLIHDGNAMIGTIRVPEVFQPARSD 133
           +  S S   ISSV +L LN++N NK+GIKYSPSRL + H G   IG IRVP+ +QPA SD
Sbjct: 71  NAYSNSTLLISSVVSLLLNAQNHNKVGIKYSPSRLHIFHQG-IPIGLIRVPQFYQPAHSD 130

Query: 134 DRSVRTRLLLHRFNVD-LFD-------ATSEFVEMKIIGDVGVELFVLHMAVIKMKVALN 193
           +  +  ++ L R NV  +FD       A    ++MKI+GD  + L +  + + K+KVAL 
Sbjct: 131 NVGLTAQISLPRLNVTRIFDQGVSKEKARKNVLQMKILGDARLHLLLSRLTLPKIKVALE 190

Query: 194 CNVDVHYRGLNFREQL 201
           C++  +Y   +F+++L
Sbjct: 191 CDIVFNYTEFSFKDEL 205

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BLAST of CmoCh17G006390 vs. TrEMBL
Match: A0A061GDY2_THECC (Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative OS=Theobroma cacao GN=TCM_029230 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.7e-29
Identity = 84/216 (38.89%), Postives = 129/216 (59.72%), Query Frame = 1


Query: 25  LKRFCLFLLFIALFSIIAIAIAALPVIFLLKPRQPIFSLESLRLDWYNISLNSASP-FIS 84
           L+R C FL    L  +  + +  L V+F+LKP++P+FS++++RLD Y +++ S S  F+S
Sbjct: 23  LRRCCFFLSVNLLVIVATVGVGGLTVVFVLKPQKPVFSIQTIRLDAYKLNVYSNSTLFVS 82

Query: 85  SVFTLTLNSRNPNKIGIKYSPSRLLLIHDGNAMIGTIRVPEVFQPARSDDRSVRTRLLLH 144
           SV +L LN+ NPNKIG+ YSPSR  L  +G   I  IRVP  +QPA S++ S+RTR+L+ 
Sbjct: 83  SVASLILNASNPNKIGLSYSPSRFQLYLEG-LPIAAIRVPRFYQPAHSNNVSLRTRVLVS 142

Query: 145 RFNVD-------LFDATSE-FVEMKIIGDVGVELFVLHMAVIKMKVALNCNVDVHYRGLN 204
             NV        L D   +  + MK++GD+ V L +LH+ + K+KVAL+C++   Y  L 
Sbjct: 143 CVNVSQVMGGGWLQDQQGQNIIPMKLLGDIKVNLHILHLTLPKIKVALDCDISFEYSQLA 202

Query: 205 FREQLLGNGATVAKALDSFPSNSNTTATNCGVAFYL 232
           F  +   N A       SF ++S +    C +A Y+
Sbjct: 203 FLNEAYSNKA-AKNLFASFSNDSKSFLKQCALAIYI 236

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BLAST of CmoCh17G006390 vs. NCBI nr
Match: gi|449448138|ref|XP_004141823.1| (PREDICTED: uncharacterized protein LOC101214000 [Cucumis sativus])

HSP 1 Score: 356.3 bits (913), Expect = 4.0e-95
Identity = 180/231 (77.92%), Postives = 204/231 (88.31%), Query Frame = 1


Query: 1   MDVLASGTRFSHRFCCHQICTLYTLKRFCLFLLFIALFSIIAIAIAALPVIFLLKPRQPI 60
           MDVL   T FSHRFCC QICTLYTLKRFC FLLF+A+FSIIAIAIAALPVIFLLKPR+PI
Sbjct: 1   MDVLEFQTPFSHRFCCKQICTLYTLKRFCFFLLFLAIFSIIAIAIAALPVIFLLKPREPI 60

Query: 61  FSLESLRLDWYNISLNSASPFISSVFTLTLNSRNPNKIGIKYSPSRLLLIHDGNAMIGTI 120
           FSL S+RLDWYNI++ S SP +SSVFTLTLNS+NPNK+GIKYSPSRLLLI+D +A+IGTI
Sbjct: 61  FSLHSVRLDWYNITIRSGSPILSSVFTLTLNSQNPNKLGIKYSPSRLLLIYDESAVIGTI 120

Query: 121 RVPEVFQPARSDDRSVRTRLLLHRFNVDLFDATSEFVEMKIIGDVGVELFVLHMAVIKMK 180
           RVPEVFQPARS +R VRTRLLLH+ +VDL + T EFVEMKIIGDVGVELFVLHM VIKMK
Sbjct: 121 RVPEVFQPARSGERIVRTRLLLHQLDVDLLETTREFVEMKIIGDVGVELFVLHMKVIKMK 180

Query: 181 VALNCNVDVHYRGLNFREQLLGNGATVAKALDSFPSNSNTTATNCGVAFYL 232
           VAL C+VD+ YR LNFRE++LGNG +V KALDS PSNS T ++ CG+AFYL
Sbjct: 181 VALKCDVDIDYRKLNFREEILGNGESVGKALDSIPSNSKTMSSKCGIAFYL 231

[Close]

BLAST of CmoCh17G006390 vs. NCBI nr
Match: gi|659124603|ref|XP_008462250.1| (PREDICTED: uncharacterized protein LOC103500653 [Cucumis melo])

HSP 1 Score: 355.9 bits (912), Expect = 5.3e-95
Identity = 184/231 (79.65%), Postives = 203/231 (87.88%), Query Frame = 1


Query: 1   MDVLASGTRFSHRFCCHQICTLYTLKRFCLFLLFIALFSIIAIAIAALPVIFLLKPRQPI 60
           MDVL   T FSHRFCC QI TLYTLKRFCLFLLF A+FSIIAIAIAALPVIFLLKPR+PI
Sbjct: 1   MDVLEFKTPFSHRFCCKQISTLYTLKRFCLFLLFAAIFSIIAIAIAALPVIFLLKPREPI 60

Query: 61  FSLESLRLDWYNISLNSASPFISSVFTLTLNSRNPNKIGIKYSPSRLLLIHDGNAMIGTI 120
           FSL+S+RLDWYNI+L S SP +SSVFTLTLNS+NPNKIGIKYSPSRLLLI+DG+AMIGTI
Sbjct: 61  FSLQSVRLDWYNITLRSGSPILSSVFTLTLNSQNPNKIGIKYSPSRLLLIYDGSAMIGTI 120

Query: 121 RVPEVFQPARSDDRSVRTRLLLHRFNVDLFDATSEFVEMKIIGDVGVELFVLHMAVIKMK 180
           RVPEVFQPARS +R VRTRLLLH+ +VDL +   EFVEMKIIGDVGVELFVLHM VIKMK
Sbjct: 121 RVPEVFQPARSGERIVRTRLLLHQLDVDLLETMREFVEMKIIGDVGVELFVLHMKVIKMK 180

Query: 181 VALNCNVDVHYRGLNFREQLLGNGATVAKALDSFPSNSNTTATNCGVAFYL 232
           VAL C+VDV YR LN RE++LGNG +V KALDS PSNS T ++ CGVAFYL
Sbjct: 181 VALKCDVDVDYRKLNLREEILGNGESVGKALDSIPSNSKTMSSKCGVAFYL 231

[Close]

BLAST of CmoCh17G006390 vs. NCBI nr
Match: gi|1000939415|ref|XP_015583314.1| (PREDICTED: uncharacterized protein LOC8270723 [Ricinus communis])

HSP 1 Score: 157.1 bits (396), Expect = 3.6e-35
Identity = 93/226 (41.15%), Postives = 135/226 (59.73%), Query Frame = 1


Query: 15  CCHQICTLYTLKRFCLFLLFIALFSIIAIAIAALPVIFLLKPRQPIFSLESLRLDWYNIS 74
           CCH +   Y+ K  CLF +   LF +I I I AL    +LKP++P FSL ++ +D Y +S
Sbjct: 13  CCHHLYNAYSFKGCCLFSIIFCLFIVIVIGILALAFFLILKPQEPKFSLSTIEVDSYRLS 72

Query: 75  LNSASP-FISSVFTLTLNSRNPNKIGIKYSPSRLLLIHDGNAMIGTIRVPEVFQPARSDD 134
           + S S  FISS  +L LN+ N NK+GI+YSPS L L + G   IG +++P  +QPA SD+
Sbjct: 73  VYSGSSLFISSNVSLILNAINHNKVGIRYSPSCLNLYYHG-IQIGVVKIPGFYQPANSDN 132

Query: 135 RSVRTRLLLHRFNVDLF--------DATSEFVEMKIIGDVGVELFVLHMAVIKMKVALNC 194
             V T++ LH  NV            A+ + V+MK+IGD+ V+L +LH+ + KMKVAL C
Sbjct: 133 VGVITKISLHCINVSQIINEGFLQKKASKKVVQMKLIGDIRVQLRLLHLTMPKMKVALEC 192

Query: 195 NVDVHYRGLNFREQLLGNGATVAKALDSFPSNSNTTATNCGVAFYL 232
           ++ ++Y  L F    L N   V + L S P NS + + NC +A Y+
Sbjct: 193 DIGINYAELPFENYELFNKEVVQEHLASLPVNSGSFSKNCTLALYI 237

[Close]

BLAST of CmoCh17G006390 vs. NCBI nr
Match: gi|658035211|ref|XP_008353130.1| (PREDICTED: uncharacterized protein LOC103416679 [Malus domestica])

HSP 1 Score: 156.0 bits (393), Expect = 8.0e-35
Identity = 97/244 (39.75%), Postives = 145/244 (59.43%), Query Frame = 1


Query: 1   MDVLASGTRFSHRFCCHQICTLYTLKRFCLFLLFIALFSIIAIAIAALPVIFLLKPRQPI 60
           MDV +  + +    C  ++C   + KR C FLL   L +++ + +  L VIF LKP++P+
Sbjct: 1   MDVSSQNSDY---LCFRKLCRACSFKRSCFFLLLYFLLAVVFLGVIVLVVIFHLKPQKPV 60

Query: 61  FSLESLRLDWYNISLNSASP-FISSVFTLTLNSRNPNKIGIKYSPSRL--LLIHDGNAMI 120
           FSL++L LD Y ++  S S  F+SSV TL+LN+ NPNK GI YSPSRL  L +HDG   I
Sbjct: 61  FSLQNLSLDSYKLNAYSGSTLFLSSVITLSLNATNPNKFGIWYSPSRLETLSLHDG-LPI 120

Query: 121 GTIRVPEVFQPARSDDRSVRTRLLLHRFNVDLFDATS--------EFVEMKIIGDVGVEL 180
           GTIR+P   QPA S + S  TR+L    NV    A +           ++KI+GDVG  L
Sbjct: 121 GTIRIPGFLQPAHSSNVSFETRILFPCVNVSQIVAEASLQDGSRKNMFQIKIVGDVGAHL 180

Query: 181 FVLHMAVIKMKVALNCNVDVHYRGLNFREQLLGNGATVAKALDSFP--SNSNTTATNCGV 232
            V H+ ++K+K+AL C++++ Y+ L  + ++   G  +   + SFP  +N+NT   NC +
Sbjct: 181 LVFHIILLKIKIALECDLNIDYKELTMKNEVYTIGG-IKNHIASFPTNTNANTFFINCSL 239

[Close]

BLAST of CmoCh17G006390 vs. NCBI nr
Match: gi|595946694|ref|XP_007216171.1| (hypothetical protein PRUPE_ppa015682mg, partial [Prunus persica])

HSP 1 Score: 154.1 bits (388), Expect = 3.0e-34
Identity = 85/199 (42.71%), Postives = 124/199 (62.31%), Query Frame = 1


Query: 11  SHRFCCHQICTLYTLKRFCLFLLFIALFSIIAIAIAALPVIFLLKPRQPIFSLESLRLDW 70
           S   CC ++C  Y+ KR   FLL     +I+ + +AAL VIF++KP++P+FSLE++ LD 
Sbjct: 8   SSYLCCQKLCHAYSFKRCSFFLLLFVTLAIVFLGVAALIVIFIMKPQRPVFSLETVSLDL 67

Query: 71  YNISLNSASP-FISSVFTLTLNSRNPNKIGIKYSPSRLLLIHDGNAMIGTIRVPEVFQPA 130
           Y +   S S  F+SS  TLTLN++NPNK+GI YSPS L ++ DG   IGTIR+P   QPA
Sbjct: 68  YTLEAYSDSTLFLSSAITLTLNAQNPNKVGIWYSPSHLEVL-DGGLSIGTIRIPGFLQPA 127

Query: 131 RSDDRSVRTRLLLHRFNVDLF--------DATSEFVEMKIIGDVGVELFVLHMAVIKMKV 190
            S + SV  R+L    NV           D+     +MKI+GDVG  L+V H+ ++K+KV
Sbjct: 128 HSSNVSVEIRVLFPCLNVSQIVAEASLQDDSRKNMFQMKIVGDVGAHLWVFHIILLKIKV 187

Query: 191 ALNCNVDVHYRGLNFREQL 201
           AL C++ + Y+ L  + ++
Sbjct: 188 ALECDISIDYKELTMKNEV 205

The following BLAST results are available for this feature:

BLAST of CmoCh17G006390 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh17G006390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K6V0_CUCSA	2.8e-95	77.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G448120 PE=4 SV=1	[more]
M5XE58_PRUPE	2.1e-34	42.71	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015682mg PE=4 S...	[more]
B9T4S1_RICCO	5.4e-30	41.67	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0044190 PE=4 SV=1	[more]
B9N7H4_POPTR	7.1e-30	43.37	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s16410g PE=4 SV=1	[more]
A0A061GDY2_THECC	2.7e-29	38.89	Late embryogenesis abundant hydroxyproline-rich glycoprotein family, putative OS...	[more]

BLAST of CmoCh17G006390 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh17G006390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448138\|ref\|XP_004141823.1\|	4.0e-95	77.92	PREDICTED: uncharacterized protein LOC101214000 [Cucumis sativus]	[more]
gi\|659124603\|ref\|XP_008462250.1\|	5.3e-95	79.65	PREDICTED: uncharacterized protein LOC103500653 [Cucumis melo]	[more]
gi\|1000939415\|ref\|XP_015583314.1\|	3.6e-35	41.15	PREDICTED: uncharacterized protein LOC8270723 [Ricinus communis]	[more]
gi\|658035211\|ref\|XP_008353130.1\|	8.0e-35	39.75	PREDICTED: uncharacterized protein LOC103416679 [Malus domestica]	[more]
gi\|595946694\|ref\|XP_007216171.1\|	3.0e-34	42.71	hypothetical protein PRUPE_ppa015682mg, partial [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh17G006390.1	CmoCh17G006390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR31852	FAMILY NOT NAMED	coord: 28..199 score: 2.8
None	No IPR available	PANTHER	PTHR31852:SF32	SUBFAMILY NOT NAMED	coord: 28..199 score: 2.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh17G006390	Cucsa.359890	Cucumber (Gy14) v1	cgycmoB0985
CmoCh17G006390	CmaCh17G006590	Cucurbita maxima (Rimu)	cmacmoB353
CmoCh17G006390	Cla015516	Watermelon (97103) v1	cmowmB324
CmoCh17G006390	Csa7G448120	Cucumber (Chinese Long) v2	cmocuB373
CmoCh17G006390	MELO3C024316	Melon (DHL92) v3.5.1	cmomeB312
CmoCh17G006390	CSPI07G22170	Wild cucumber (PI 183967)	cmocpiB376
CmoCh17G006390	Lsi02G028650	Bottle gourd (USVL1VR-Ls)	cmolsiB333
CmoCh17G006390	Cp4.1LG12g09520	Cucurbita pepo (Zucchini)	cmocpeB335
CmoCh17G006390	MELO3C024316.2	Melon (DHL92) v3.6.1	cmomedB358
CmoCh17G006390	CsaV3_7G034060	Cucumber (Chinese Long) v3	cmocucB0449
CmoCh17G006390	Cla97C09G163360	Watermelon (97103) v2	cmowmbB372
CmoCh17G006390	Bhi09G000215	Wax gourd	cmowgoB0487
CmoCh17G006390	Carg18954	Silver-seed gourd	carcmoB1037

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh17G006390	Cucumber (Gy14) v2	cgybcmoB321
CmoCh17G006390	Cucumber (Gy14) v2	cgybcmoB902
CmoCh17G006390	Melon (DHL92) v3.6.1	cmomedB375
CmoCh17G006390	Silver-seed gourd	carcmoB0165
CmoCh17G006390	Silver-seed gourd	carcmoB0818
CmoCh17G006390	Cucumber (Chinese Long) v3	cmocucB0425
CmoCh17G006390	Watermelon (97103) v2	cmowmbB363
CmoCh17G006390	Wax gourd	cmowgoB0475
CmoCh17G006390	Cucurbita moschata (Rifu)	cmocmoB195
CmoCh17G006390	Cucurbita moschata (Rifu)	cmocmoB200
CmoCh17G006390	Cucurbita moschata (Rifu)	cmocmoB320
CmoCh17G006390	Cucumber (Gy14) v1	cgycmoB0411
CmoCh17G006390	Cucurbita maxima (Rimu)	cmacmoB249
CmoCh17G006390	Cucurbita maxima (Rimu)	cmacmoB253
CmoCh17G006390	Cucurbita maxima (Rimu)	cmacmoB897
CmoCh17G006390	Wild cucumber (PI 183967)	cmocpiB357
CmoCh17G006390	Cucumber (Chinese Long) v2	cmocuB352
CmoCh17G006390	Melon (DHL92) v3.5.1	cmomeB327
CmoCh17G006390	Watermelon (Charleston Gray)	cmowcgB301
CmoCh17G006390	Watermelon (Charleston Gray)	cmowcgB327
CmoCh17G006390	Watermelon (97103) v1	cmowmB335
CmoCh17G006390	Watermelon (97103) v1	cmowmB338
CmoCh17G006390	Cucurbita pepo (Zucchini)	cmocpeB339
CmoCh17G006390	Cucurbita pepo (Zucchini)	cmocpeB366
CmoCh17G006390	Bottle gourd (USVL1VR-Ls)	cmolsiB348