CmoCh17G005510 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGATAACAATGCAAAGGTTTGGTTGGAGAAGTGTGTGGAGAAGAAGGCAGAGCAATATTGGGCGGTTTATAGTGATGGAAGTATAAGAGTAAATAGTAGCCGTAATTTCTGTGTGTCGGCAGCTTCAGATTCGCCAGGGGGGCTTATTACCATCACTAAGTGCAATGGATCATCAAAGCAACGATGGGTTTTCATGGCGGATGCCACAATTTTGAACCCCAAATCTGGGTTGGTCATGGAGGTTGAAGGCTCTCAAGTTTCCCGAAACAAAATTATTTTATACCCCATAAAGGGTCGTTCTAGCCAACAATGGACTTTGTTCTACTAA ATGGATAACAATGCAAAGGTTTGGTTGGAGAAGTGTGTGGAGAAGAAGGCAGAGCAATATTGGGCGGTTTATAGTGATGGAAGTATAAGAGTAAATAGTAGCCGTAATTTCTGTGTGTCGGCAGCTTCAGATTCGCCAGGGGGGCTTATTACCATCACTAAGTGCAATGGATCATCAAAGCAACGATGGGTTTTCATGGCGGATGCCACAATTTTGAACCCCAAATCTGGGTTGGTCATGGAGGTTGAAGGCTCTCAAGTTTCCCGAAACAAAATTATTTTATACCCCATAAAGGGTCGTTCTAGCCAACAATGGACTTTGTTCTACTAA ATGGATAACAATGCAAAGGTTTGGTTGGAGAAGTGTGTGGAGAAGAAGGCAGAGCAATATTGGGCGGTTTATAGTGATGGAAGTATAAGAGTAAATAGTAGCCGTAATTTCTGTGTGTCGGCAGCTTCAGATTCGCCAGGGGGGCTTATTACCATCACTAAGTGCAATGGATCATCAAAGCAACGATGGGTTTTCATGGCGGATGCCACAATTTTGAACCCCAAATCTGGGTTGGTCATGGAGGTTGAAGGCTCTCAAGTTTCCCGAAACAAAATTATTTTATACCCCATAAAGGGTCGTTCTAGCCAACAATGGACTTTGTTCTACTAA
BLAST of CmoCh17G005510 vs. Swiss-Prot
Match: SGSL_TRIAN (Seed lectin (Fragments) OS=Trichosanthes anguina PE=1 SV=2) HSP 1 Score: 107.8 bits (268), Expect = 7.4e-23 Identity = 54/111 (48.65%), Postives = 72/111 (64.86%), Query Frame = 1
BLAST of CmoCh17G005510 vs. Swiss-Prot
Match: NIGB_SAMNI (Nigrin b OS=Sambucus nigra PE=1 SV=2) HSP 1 Score: 100.1 bits (248), Expect = 1.5e-20 Identity = 47/102 (46.08%), Postives = 61/102 (59.80%), Query Frame = 1
BLAST of CmoCh17G005510 vs. Swiss-Prot
Match: RICI_RICCO (Ricin OS=Ricinus communis PE=1 SV=1) HSP 1 Score: 98.6 bits (244), Expect = 4.5e-20 Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 1
BLAST of CmoCh17G005510 vs. Swiss-Prot
Match: AGGL_RICCO (Agglutinin OS=Ricinus communis PE=1 SV=1) HSP 1 Score: 98.2 bits (243), Expect = 5.9e-20 Identity = 47/104 (45.19%), Postives = 67/104 (64.42%), Query Frame = 1
BLAST of CmoCh17G005510 vs. Swiss-Prot
Match: ML3_VISAL (Beta-galactoside-specific lectin 3 OS=Viscum album PE=1 SV=2) HSP 1 Score: 96.7 bits (239), Expect = 1.7e-19 Identity = 47/104 (45.19%), Postives = 62/104 (59.62%), Query Frame = 1
BLAST of CmoCh17G005510 vs. TrEMBL
Match: A0A0A0K979_CUCSA (rRNA N-glycosidase OS=Cucumis sativus GN=Csa_6G040650 PE=3 SV=1) HSP 1 Score: 146.0 bits (367), Expect = 2.7e-32 Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 1
BLAST of CmoCh17G005510 vs. TrEMBL
Match: O22415_SAMNI (rRNA N-glycosidase OS=Sambucus nigra GN=LECSNA-If PE=2 SV=1) HSP 1 Score: 117.9 bits (294), Expect = 7.9e-24 Identity = 56/102 (54.90%), Postives = 67/102 (65.69%), Query Frame = 1
BLAST of CmoCh17G005510 vs. TrEMBL
Match: B7X8M2_MOMCH (rRNA N-glycosidase OS=Momordica charantia GN=MCL1 PE=2 SV=1) HSP 1 Score: 116.3 bits (290), Expect = 2.3e-23 Identity = 55/109 (50.46%), Postives = 73/109 (66.97%), Query Frame = 1
BLAST of CmoCh17G005510 vs. TrEMBL
Match: A0A0A0KN71_CUCSA (rRNA N-glycosidase OS=Cucumis sativus GN=Csa_5G428440 PE=3 SV=1) HSP 1 Score: 112.1 bits (279), Expect = 4.4e-22 Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 1
BLAST of CmoCh17G005510 vs. TrEMBL
Match: B5WYH8_SAMEB (rRNA N-glycosylase (Fragment) OS=Sambucus ebulus GN=ar PE=4 SV=1) HSP 1 Score: 110.9 bits (276), Expect = 9.7e-22 Identity = 53/102 (51.96%), Postives = 66/102 (64.71%), Query Frame = 1
BLAST of CmoCh17G005510 vs. NCBI nr
Match: gi|778710161|ref|XP_011656527.1| (PREDICTED: nigrin b-like [Cucumis sativus]) HSP 1 Score: 146.0 bits (367), Expect = 3.9e-32 Identity = 66/108 (61.11%), Postives = 84/108 (77.78%), Query Frame = 1
BLAST of CmoCh17G005510 vs. NCBI nr
Match: gi|659090016|ref|XP_008445788.1| (PREDICTED: nigrin b-like [Cucumis melo]) HSP 1 Score: 138.7 bits (348), Expect = 6.2e-30 Identity = 65/108 (60.19%), Postives = 80/108 (74.07%), Query Frame = 1
BLAST of CmoCh17G005510 vs. NCBI nr
Match: gi|659116528|ref|XP_008458115.1| (PREDICTED: nigrin b-like [Cucumis melo]) HSP 1 Score: 122.9 bits (307), Expect = 3.5e-25 Identity = 58/110 (52.73%), Postives = 76/110 (69.09%), Query Frame = 1
BLAST of CmoCh17G005510 vs. NCBI nr
Match: gi|659126458|ref|XP_008463192.1| (PREDICTED: nigrin b-like [Cucumis melo]) HSP 1 Score: 119.0 bits (297), Expect = 5.1e-24 Identity = 58/109 (53.21%), Postives = 71/109 (65.14%), Query Frame = 1
BLAST of CmoCh17G005510 vs. NCBI nr
Match: gi|2331046|gb|AAC49989.1| (type 2 ribosome-inactivating protein SNAIf precursor [Sambucus nigra]) HSP 1 Score: 117.9 bits (294), Expect = 1.1e-23 Identity = 56/102 (54.90%), Postives = 67/102 (65.69%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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