CmoCh16G012730 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGAAAGTCCTGAATTTGATCAGGGATTTCGAGTTGCAGAAGATGAAGGAGTCAGAGTCCGTAAAAGAGTACTCTGACAGACTTCTCAGCATCGCCAACAAGGTGAGATTGCTTGGTTCTGTATTAAATGATTCCAAGATCGTTGAAAAGCTGCTAGTCACTCTTCCAGAGAAGTTTGAAGCCATCATTACTACTCTGGAGAACACCAAAGACTTGTCAAAGATTTCTCTTACAGAGCTCTTGAATGCTTTACAAGCGCAAGAGCAAAGGAGGTCTATGAGACAAGAAGGGGTGATTGAAGGTGCCTTACTTGTTAAGCATCAAGACAGCCGCAGGTATAAAAACAACAAAAATTTCAAAAATCAATTGACGTATGGAGATTCATCTGCCAATTATCAAAAGACAAAAGGAGGAGGTTTCAAAAAATCCTATCCACCTTGCTGCCATTGTGAGAAGAAAGGCCATCCACCATACAAGTGTTGGAGAAGACCTGACGCCTTCTGCTCCAAATGCAATCAACTTGGACATGAAGCTGTGATCTGCAAAGCCAAAGATCTGGTGAAAGAAGTAGATGCACAGGTCGTTGATCAAGAAGAAGAAGAAGAAGAAGAAGATCAATTGTTTATGGTCACTTCTTCCTCAAGCAAAGAATCAAGCGAGAGCTGGTTGATTGACAGTGGGTGCACAAATCACATGACATATGACAAGGAGTCTTTTGAGGAATTAAGAGACACCGAGGATAAGAGAGTGAGGATTGGCAACGGTGAACACTTGGAAGTCAGGGAAAAGGCACAGTAG ATGAAAGTCCTGAATTTGATCAGGGATTTCGAGTTGCAGAAGATGAAGGAGTCAGAGTCCGTAAAAGAGTACTCTGACAGACTTCTCAGCATCGCCAACAAGGTGAGATTGCTTGGTTCTGTATTAAATGATTCCAAGATCGTTGAAAAGCTGCTAGTCACTCTTCCAGAGAAGTTTGAAGCCATCATTACTACTCTGGAGAACACCAAAGACTTGTCAAAGATTTCTCTTACAGAGCTCTTGAATGCTTTACAAGCGCAAGAGCAAAGGAGGTCTATGAGACAAGAAGGGGTGATTGAAGGTGCCTTACTTGTTAAGCATCAAGACAGCCGCAGGTATAAAAACAACAAAAATTTCAAAAATCAATTGACGTATGGAGATTCATCTGCCAATTATCAAAAGACAAAAGGAGGAGGTTTCAAAAAATCCTATCCACCTTGCTGCCATTGTGAGAAGAAAGGCCATCCACCATACAAGTGTTGGAGAAGACCTGACGCCTTCTGCTCCAAATGCAATCAACTTGGACATGAAGCTGTGATCTGCAAAGCCAAAGATCTGGTGAAAGAAGTAGATGCACAGGTCGTTGATCAAGAAGAAGAAGAAGAAGAAGAAGATCAATTGTTTATGGTCACTTCTTCCTCAAGCAAAGAATCAAGCGAGAGCTGGTTGATTGACAGTGGGTGCACAAATCACATGACATATGACAAGGAGTCTTTTGAGGAATTAAGAGACACCGAGGATAAGAGAGTGAGGATTGGCAACGGTGAACACTTGGAAGTCAGGGAAAAGGCACAGTAG ATGAAAGTCCTGAATTTGATCAGGGATTTCGAGTTGCAGAAGATGAAGGAGTCAGAGTCCGTAAAAGAGTACTCTGACAGACTTCTCAGCATCGCCAACAAGGTGAGATTGCTTGGTTCTGTATTAAATGATTCCAAGATCGTTGAAAAGCTGCTAGTCACTCTTCCAGAGAAGTTTGAAGCCATCATTACTACTCTGGAGAACACCAAAGACTTGTCAAAGATTTCTCTTACAGAGCTCTTGAATGCTTTACAAGCGCAAGAGCAAAGGAGGTCTATGAGACAAGAAGGGGTGATTGAAGGTGCCTTACTTGTTAAGCATCAAGACAGCCGCAGGTATAAAAACAACAAAAATTTCAAAAATCAATTGACGTATGGAGATTCATCTGCCAATTATCAAAAGACAAAAGGAGGAGGTTTCAAAAAATCCTATCCACCTTGCTGCCATTGTGAGAAGAAAGGCCATCCACCATACAAGTGTTGGAGAAGACCTGACGCCTTCTGCTCCAAATGCAATCAACTTGGACATGAAGCTGTGATCTGCAAAGCCAAAGATCTGGTGAAAGAAGTAGATGCACAGGTCGTTGATCAAGAAGAAGAAGAAGAAGAAGAAGATCAATTGTTTATGGTCACTTCTTCCTCAAGCAAAGAATCAAGCGAGAGCTGGTTGATTGACAGTGGGTGCACAAATCACATGACATATGACAAGGAGTCTTTTGAGGAATTAAGAGACACCGAGGATAAGAGAGTGAGGATTGGCAACGGTGAACACTTGGAAGTCAGGGAAAAGGCACAGTAG
BLAST of CmoCh16G012730 vs. TrEMBL
Match: M1B1W5_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400013513 PE=4 SV=1) HSP 1 Score: 303.1 bits (775), Expect = 3.2e-79 Identity = 171/264 (64.77%), Postives = 201/264 (76.14%), Query Frame = 1
BLAST of CmoCh16G012730 vs. TrEMBL
Match: A0A151RSW3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_032849 PE=4 SV=1) HSP 1 Score: 301.6 bits (771), Expect = 9.4e-79 Identity = 160/263 (60.84%), Postives = 201/263 (76.43%), Query Frame = 1
BLAST of CmoCh16G012730 vs. TrEMBL
Match: A0A151TNI1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_022187 PE=4 SV=1) HSP 1 Score: 297.7 bits (761), Expect = 1.4e-77 Identity = 158/263 (60.08%), Postives = 200/263 (76.05%), Query Frame = 1
BLAST of CmoCh16G012730 vs. TrEMBL
Match: A0A151RSU4_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_032829 PE=4 SV=1) HSP 1 Score: 290.4 bits (742), Expect = 2.2e-75 Identity = 155/263 (58.94%), Postives = 197/263 (74.90%), Query Frame = 1
BLAST of CmoCh16G012730 vs. TrEMBL
Match: A0A0B2QXU6_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Glycine soja GN=glysoja_032262 PE=4 SV=1) HSP 1 Score: 284.3 bits (726), Expect = 1.6e-73 Identity = 155/263 (58.94%), Postives = 199/263 (75.67%), Query Frame = 1
BLAST of CmoCh16G012730 vs. NCBI nr
Match: gi|697187607|ref|XP_009602835.1| (PREDICTED: uncharacterized protein LOC104097920 [Nicotiana tomentosiformis]) HSP 1 Score: 320.5 bits (820), Expect = 2.8e-84 Identity = 166/243 (68.31%), Postives = 200/243 (82.30%), Query Frame = 1
BLAST of CmoCh16G012730 vs. NCBI nr
Match: gi|823166118|ref|XP_012483005.1| (PREDICTED: uncharacterized protein LOC105797604 [Gossypium raimondii]) HSP 1 Score: 316.6 bits (810), Expect = 4.1e-83 Identity = 165/193 (85.49%), Postives = 175/193 (90.67%), Query Frame = 1
BLAST of CmoCh16G012730 vs. NCBI nr
Match: gi|659093732|ref|XP_008447689.1| (PREDICTED: uncharacterized protein LOC103490099 [Cucumis melo]) HSP 1 Score: 305.8 bits (782), Expect = 7.2e-80 Identity = 162/265 (61.13%), Postives = 208/265 (78.49%), Query Frame = 1
BLAST of CmoCh16G012730 vs. NCBI nr
Match: gi|823241747|ref|XP_012453556.1| (PREDICTED: uncharacterized protein LOC105775599 [Gossypium raimondii]) HSP 1 Score: 303.1 bits (775), Expect = 4.7e-79 Identity = 161/193 (83.42%), Postives = 171/193 (88.60%), Query Frame = 1
BLAST of CmoCh16G012730 vs. NCBI nr
Match: gi|1012334254|gb|KYP45621.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]) HSP 1 Score: 301.6 bits (771), Expect = 1.4e-78 Identity = 160/263 (60.84%), Postives = 201/263 (76.43%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
|