CmoCh14G002640 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G002640
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transforming growth factor-beta receptor-associated protein 1 homolog
Location	Cmo_Chr14 : 1191026 .. 1192507 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTTGTGTCGATAATCCTGGTGGACAAGAAAAGCTGTTTATATATAATCAATCACACTATAAGAGGTATATGTTCTATGAGTAACCTTTGAATATCGTTGGTATGGAGGTTCCAAAATACACGGTGCGTCTGGGAAGATTCCATATCCAGTCCCTTGGAACATCTATTGGGTTGAGGCTTGACTCGTGATCTGCAAACACCTACAAAGGAAATAATTATAGTTAGTTGTGGCACCAAGCCTCGAATGAAAACATGAAAACATGGTGTAAACAGTATTCAACTTTACCTCATTGACTTGAAAGTAGGTACCATTCAGTGGAAAGCTTCCTCTCATTGCTGTCCGGCATGGTATCTGTTTTTTTCATTTTTTTTTTTTTTTTTGGGNTGTCATTTTCTTTAGATATTTAAGGAATAAACACCTTTTGTCTAACTTTTAGGATAACATTGGCGTTTTCGTGGACCAAAATGGGAAGCTTCTTCAAGAAGGTCGGATTTGTTGGTCAGAGGCACCTTCTGTCGTTGTCATACAGAAGCCCTATGCCATTGCTTTGTTGCCAAGATATATTGAGGTATCCTTAATCCACTGTAAACAATTTCAAACACTTCGTCATTGAAATCTTTACATTTTCTTCCGTTCTTTAAACTTGCAGATTCGGTCTCTCTGGTCTCCATATGCATTGATACAAACCATTGTCCTTCGAAATGGTCGGCATCTTATTGACAGTAATCATGCTCTGGTTGTTGGTTTAGACAATTCTGCCTATGGCCTCTTCCCTGTTCCCCTTGGTGCACAGGTGATCCTCAGCCCATTACAAGATTGTGTTAATTATGGGCGGTTGTAGTTTGGGATGTCTGTGTTTATGTTGTCGATTATCAAAAGGGAAATACGTACAAAATTAGATCGTTTTATGATTTGAGTATGATAGTAATAGTTTCAGATATATTGTGCATTATTAAATAGAGATGATTCGGTTTATATGCACCAAAATCTGGATATAGCACAAACATCTTTCTCTGAGGTTTACATGTAAGAAACTGTCTTTTGGGTTGCAGATTGTACAACTAACAGCGTCTGGTAACTTTGAGGAAGCGTTGGCTTTATGCAAGTTGCTTCCACCTGAAGATTCAAGCCTTCGATCTGCAAAGGAGAGTTCCATCCATATCAGGTGGGTAATCCTACTAAGAAACCTACTGCTGTGGTTTTTATTCTTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGGGGGGGGGGGGGATATTGATTAAGATTCGATATGCTAGGTATATTTGAGCATAACCACTTATTTGACTAGACATGTCTCACCAAAAGAGTCCCTCGAACCATGAGAGAGTTGGCTTCTCTGACACTGTTGCACGAGAGGCACTCCTCTTCAAGACACAATTGATGATGTTCTTGATTACTGCATCTCTTTTCTGGTAGTTGGATGGAATTTGCTGTTTCACCTAAGTGA

mRNA sequence

ATGCCTTGTGTCGATAATCCTGGTGGACAAGAAAAGCTGTTTATATATAATCAATCACACTATAAGAGGTACCATTCAGTGGAAAGCTTCCTCTCATTGCTGTCCGGCATGGATAACATTGGCGTTTTCGTGGACCAAAATGGGAAGCTTCTTCAAGAAGGTCGGATTTGTTGGTCAGAGGCACCTTCTGTCGTTGTCATACAGAAGCCCTATGCCATTGCTTTGTTGCCAAGATATATTGAGATTCGGTCTCTCTGGTCTCCATATGCATTGATACAAACCATTGTCCTTCGAAATGGTCGGCATCTTATTGACAGTAATCATGCTCTGGTTGTTGGTTTAGACAATTCTGCCTATGGCCTCTTCCCTGTTCCCCTTGGTGCACAGATTGTACAACTAACAGCGTCTGGTAACTTTGAGGAAGCGTTGGCTTTATGCAAGTTGCTTCCACCTGAAGATTCAAGCCTTCGATCTGCAAAGGAGAGTTCCATCCATATCAGTTGGATGGAATTTGCTGTTTCACCTAAGTGA

Coding sequence (CDS)

ATGCCTTGTGTCGATAATCCTGGTGGACAAGAAAAGCTGTTTATATATAATCAATCACACTATAAGAGGTACCATTCAGTGGAAAGCTTCCTCTCATTGCTGTCCGGCATGGATAACATTGGCGTTTTCGTGGACCAAAATGGGAAGCTTCTTCAAGAAGGTCGGATTTGTTGGTCAGAGGCACCTTCTGTCGTTGTCATACAGAAGCCCTATGCCATTGCTTTGTTGCCAAGATATATTGAGATTCGGTCTCTCTGGTCTCCATATGCATTGATACAAACCATTGTCCTTCGAAATGGTCGGCATCTTATTGACAGTAATCATGCTCTGGTTGTTGGTTTAGACAATTCTGCCTATGGCCTCTTCCCTGTTCCCCTTGGTGCACAGATTGTACAACTAACAGCGTCTGGTAACTTTGAGGAAGCGTTGGCTTTATGCAAGTTGCTTCCACCTGAAGATTCAAGCCTTCGATCTGCAAAGGAGAGTTCCATCCATATCAGTTGGATGGAATTTGCTGTTTCACCTAAGTGA

Homology

[Close]

BLAST of CmoCh14G002640 vs. Swiss-Prot
Match: VPS39_MOUSE (Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 6.6e-13
Identity = 44/131 (33.59%), Postives = 72/131 (54.96%), Query Frame = 1


Query: 36  GMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTI 95
           G D++ V +++ G   Q+  + W++ P  +  Q PY +A+LPRY+EIR+L  P  L+Q+I
Sbjct: 221 GQDDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIVAVLPRYVEIRTL-EPRLLVQSI 280

Query: 96  VLRNGRHLID-SNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPEDS 155
            L+  R +    ++ + V  ++  + L PVP+  QI QL     FE AL L ++    DS
Sbjct: 281 ELQRPRFITSGGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDS 340

Query: 156 SLRSAKESSIH 166
                K+  IH
Sbjct: 341 E----KQQQIH 346

[Close]

BLAST of CmoCh14G002640 vs. Swiss-Prot
Match: VPS39_HUMAN (Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 PE=1 SV=2)

HSP 1 Score: 75.1 bits (183), Expect = 8.6e-13
Identity = 44/131 (33.59%), Postives = 72/131 (54.96%), Query Frame = 1


Query: 36  GMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALIQTI 95
           G D++ V +++ G   Q+  + W++ P  +  Q PY IA+LPRY+EIR+ + P  L+Q+I
Sbjct: 221 GQDDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIIAVLPRYVEIRT-FEPRLLVQSI 280

Query: 96  VLRNGRHLID-SNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPEDS 155
            L+  R +    ++ + V  ++  + L PVP+  QI QL     FE AL L ++    DS
Sbjct: 281 ELQRPRFITSGGSNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDS 340

Query: 156 SLRSAKESSIH 166
                K+  IH
Sbjct: 341 E----KQQQIH 346

[Close]

BLAST of CmoCh14G002640 vs. Swiss-Prot
Match: TGFA1_DANRE (Transforming growth factor-beta receptor-associated protein 1 homolog OS=Danio rerio GN=tgfbrap1 PE=2 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 4.9e-08
Identity = 38/113 (33.63%), Postives = 56/113 (49.56%), Query Frame = 1


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL+    +G+F +  G + Q   + WSE      +  PY +AL   ++ + S+     L 
Sbjct: 222 LLAAPGGLGMFANAEG-ISQRAPVSWSENVIAAAVCFPYVVALDEGFVTVHSMLDQQ-LK 281

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALAL 146
           QT+  R+G+ L D    +VV    + Y L P+PL  QI  L AS   EEAL L
Sbjct: 282 QTLSFRDGQLLQDFEGKVVVASSKAVYMLVPLPLERQIQDLLASHRVEEALTL 332

[Close]

BLAST of CmoCh14G002640 vs. TrEMBL
Match: A0A0A0KUC3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G038630 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 1.1e-64
Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 1


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQ PYA+ALLPRY+EIRSL SPYALI
Sbjct: 214 LLLGKDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQNPYAVALLPRYVEIRSLRSPYALI 273

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QTIVLRNGRHLIDS HALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE
Sbjct: 274 QTIVLRNGRHLIDSKHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 333

Query: 153 DSSLRSAKESSIHISWMEF 172
           DSSLRSAKESSIHI +  +
Sbjct: 334 DSSLRSAKESSIHIRYAHY 352

[Close]

BLAST of CmoCh14G002640 vs. TrEMBL
Match: A0A068TUL7_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026055001 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 1.2e-56
Identity = 112/139 (80.58%), Postives = 123/139 (88.49%), Query Frame = 1


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL G DNIGVFVDQNGKLLQEGRICWSEAP+VVVIQKPYAI LLPR++EIRSL  PY LI
Sbjct: 216 LLLGKDNIGVFVDQNGKLLQEGRICWSEAPAVVVIQKPYAIGLLPRHVEIRSLRDPYPLI 275

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QT+VLRN R L+ SN A++V LDNS +GLFPVPLGAQIVQLTASGNFEEALALCKLLPPE
Sbjct: 276 QTVVLRNVRRLLQSNSAIIVALDNSVHGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 335

Query: 153 DSSLRSAKESSIHISWMEF 172
           DSSLR+AKE SIHI +  +
Sbjct: 336 DSSLRAAKEQSIHIRYAHY 354

[Close]

BLAST of CmoCh14G002640 vs. TrEMBL
Match: W9R2Z6_9ROSA (Vam6/Vps39-like protein OS=Morus notabilis GN=L484_020292 PE=4 SV=1)

HSP 1 Score: 224.9 bits (572), Expect = 7.5e-56
Identity = 109/139 (78.42%), Postives = 124/139 (89.21%), Query Frame = 1


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL G DNIGVFVDQNGKL+QEGRICWSEAPS V+IQKPYAIALLPR++E+RSL +PY LI
Sbjct: 214 LLLGKDNIGVFVDQNGKLIQEGRICWSEAPSAVIIQKPYAIALLPRFVEVRSLRAPYPLI 273

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QT+VLRN R L+ SN++ VV LDNS YGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE
Sbjct: 274 QTVVLRNVRRLLQSNNSAVVALDNSVYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 333

Query: 153 DSSLRSAKESSIHISWMEF 172
           D++LR+AKE SIHI +  +
Sbjct: 334 DANLRTAKEWSIHIRFAHY 352

[Close]

BLAST of CmoCh14G002640 vs. TrEMBL
Match: K4CGJ8_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.7e-55
Identity = 108/139 (77.70%), Postives = 122/139 (87.77%), Query Frame = 1


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL G DNIGV VDQNGKL+QEGR+CWSEAP++VV+QKPYAI LLPR++EIRSL  PY LI
Sbjct: 214 LLLGKDNIGVLVDQNGKLIQEGRVCWSEAPAIVVVQKPYAIGLLPRHVEIRSLRVPYPLI 273

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QT+VLRN R L+ SN+A++V LDNS +G FPVPLGAQIVQLTASGNFEEALALCKLLPPE
Sbjct: 274 QTVVLRNVRRLVRSNNAVIVALDNSVFGFFPVPLGAQIVQLTASGNFEEALALCKLLPPE 333

Query: 153 DSSLRSAKESSIHISWMEF 172
           DSSLRSAKE SIHI +  F
Sbjct: 334 DSSLRSAKEQSIHIRYAHF 352

[Close]

BLAST of CmoCh14G002640 vs. TrEMBL
Match: A0A0V0IXF1_SOLCH (Putative vam6/Vps39-like protein-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 223.8 bits (569), Expect = 1.7e-55
Identity = 108/139 (77.70%), Postives = 122/139 (87.77%), Query Frame = 1


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL G DNIGV VDQNGKL+QEGR+CWSEAP++VV+QKPYAI LLPR++EIRSL  PY LI
Sbjct: 130 LLLGKDNIGVLVDQNGKLIQEGRVCWSEAPAIVVVQKPYAIGLLPRHVEIRSLRVPYPLI 189

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QT+VLRN R L+ SN+A++V LDNS +G FPVPLGAQIVQLTASGNFEEALALCKLLPPE
Sbjct: 190 QTVVLRNVRRLVRSNNAVIVALDNSVFGFFPVPLGAQIVQLTASGNFEEALALCKLLPPE 249

Query: 153 DSSLRSAKESSIHISWMEF 172
           DSSLRSAKE SIHI +  F
Sbjct: 250 DSSLRSAKEQSIHIRYAHF 268

[Close]

BLAST of CmoCh14G002640 vs. TAIR10
Match: AT4G36630.1 (AT4G36630.1 Vacuolar sorting protein 39)

HSP 1 Score: 205.3 bits (521), Expect = 3.1e-53
Identity = 101/139 (72.66%), Postives = 119/139 (85.61%), Query Frame = 1


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           L+ G +NIGVFVDQNGKLLQ  RICWSEAP+ +VIQ PYAIALLPR +E+R L SPY LI
Sbjct: 205 LILGKENIGVFVDQNGKLLQTERICWSEAPTSIVIQNPYAIALLPRRVEVRLLRSPYPLI 264

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QTIVL+N R L+ SN+A++VGLDNS Y LFPV +GAQIVQLTASGNFEEALALCK+LPP+
Sbjct: 265 QTIVLQNIRRLVKSNNAVIVGLDNSVYVLFPVSIGAQIVQLTASGNFEEALALCKVLPPD 324

Query: 153 DSSLRSAKESSIHISWMEF 172
           +SSLR+AKESSIH  +  +
Sbjct: 325 ESSLRAAKESSIHTRFAHY 343

[Close]

BLAST of CmoCh14G002640 vs. NCBI nr
Match: gi|659107576|ref|XP_008453745.1| (PREDICTED: vam6/Vps39-like protein [Cucumis melo])

HSP 1 Score: 254.6 bits (649), Expect = 1.3e-64
Identity = 128/139 (92.09%), Postives = 131/139 (94.24%), Query Frame = 1


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQ PYA+ALLPRYIEIRSL SPYALI
Sbjct: 214 LLLGKDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQNPYAVALLPRYIEIRSLRSPYALI 273

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QTIVLRNGRHLIDS HALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE
Sbjct: 274 QTIVLRNGRHLIDSKHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 333

Query: 153 DSSLRSAKESSIHISWMEF 172
           DSSLRSAKESSIHI +  +
Sbjct: 334 DSSLRSAKESSIHIRYAHY 352

[Close]

BLAST of CmoCh14G002640 vs. NCBI nr
Match: gi|449462842|ref|XP_004149149.1| (PREDICTED: vam6/Vps39-like protein [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 1.6e-64
Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 1


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQ PYA+ALLPRY+EIRSL SPYALI
Sbjct: 214 LLLGKDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQNPYAVALLPRYVEIRSLRSPYALI 273

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QTIVLRNGRHLIDS HALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE
Sbjct: 274 QTIVLRNGRHLIDSKHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 333

Query: 153 DSSLRSAKESSIHISWMEF 172
           DSSLRSAKESSIHI +  +
Sbjct: 334 DSSLRSAKESSIHIRYAHY 352

[Close]

BLAST of CmoCh14G002640 vs. NCBI nr
Match: gi|700198087|gb|KGN53245.1| (hypothetical protein Csa_4G038630 [Cucumis sativus])

HSP 1 Score: 254.2 bits (648), Expect = 1.6e-64
Identity = 127/139 (91.37%), Postives = 131/139 (94.24%), Query Frame = 1


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL G DNIGVFVDQNGKLLQEGRICWSEAPSVVVIQ PYA+ALLPRY+EIRSL SPYALI
Sbjct: 214 LLLGKDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQNPYAVALLPRYVEIRSLRSPYALI 273

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QTIVLRNGRHLIDS HALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE
Sbjct: 274 QTIVLRNGRHLIDSKHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 333

Query: 153 DSSLRSAKESSIHISWMEF 172
           DSSLRSAKESSIHI +  +
Sbjct: 334 DSSLRSAKESSIHIRYAHY 352

[Close]

BLAST of CmoCh14G002640 vs. NCBI nr
Match: gi|661897331|emb|CDO99043.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 227.6 bits (579), Expect = 1.7e-56
Identity = 112/139 (80.58%), Postives = 123/139 (88.49%), Query Frame = 1


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL G DNIGVFVDQNGKLLQEGRICWSEAP+VVVIQKPYAI LLPR++EIRSL  PY LI
Sbjct: 216 LLLGKDNIGVFVDQNGKLLQEGRICWSEAPAVVVIQKPYAIGLLPRHVEIRSLRDPYPLI 275

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QT+VLRN R L+ SN A++V LDNS +GLFPVPLGAQIVQLTASGNFEEALALCKLLPPE
Sbjct: 276 QTVVLRNVRRLLQSNSAIIVALDNSVHGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 335

Query: 153 DSSLRSAKESSIHISWMEF 172
           DSSLR+AKE SIHI +  +
Sbjct: 336 DSSLRAAKEQSIHIRYAHY 354

[Close]

BLAST of CmoCh14G002640 vs. NCBI nr
Match: gi|1009144655|ref|XP_015889919.1| (PREDICTED: vam6/Vps39-like protein [Ziziphus jujuba])

HSP 1 Score: 226.5 bits (576), Expect = 3.7e-56
Identity = 109/139 (78.42%), Postives = 126/139 (90.65%), Query Frame = 1


Query: 33  LLSGMDNIGVFVDQNGKLLQEGRICWSEAPSVVVIQKPYAIALLPRYIEIRSLWSPYALI 92
           LL G DNIGVFVDQNGKLLQEGRICWSEAP+VV+I+KPYAIALLPR++E+RSL +PY LI
Sbjct: 214 LLLGKDNIGVFVDQNGKLLQEGRICWSEAPTVVIIKKPYAIALLPRFVEVRSLRAPYPLI 273

Query: 93  QTIVLRNGRHLIDSNHALVVGLDNSAYGLFPVPLGAQIVQLTASGNFEEALALCKLLPPE 152
           QT+VLRN RHLI SN+A++V  +NS YGLFPVPLGAQIVQLTASG+FEEALALCKLLPPE
Sbjct: 274 QTVVLRNVRHLIQSNNAVIVAPENSVYGLFPVPLGAQIVQLTASGDFEEALALCKLLPPE 333

Query: 153 DSSLRSAKESSIHISWMEF 172
           DS+LR+AKE SIHI +  +
Sbjct: 334 DSTLRAAKEGSIHIRYAHY 352

The following BLAST results are available for this feature:

BLAST of CmoCh14G002640 vs. Swiss-Prot


Match Name	E-value	Identity	Description
VPS39_MOUSE	6.6e-13	33.59	Vam6/Vps39-like protein OS=Mus musculus GN=Vps39 PE=1 SV=1	[more]
VPS39_HUMAN	8.6e-13	33.59	Vam6/Vps39-like protein OS=Homo sapiens GN=VPS39 PE=1 SV=2	[more]
TGFA1_DANRE	4.9e-08	33.63	Transforming growth factor-beta receptor-associated protein 1 homolog OS=Danio r...	[more]

BLAST of CmoCh14G002640 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUC3_CUCSA	1.1e-64	91.37	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G038630 PE=4 SV=1	[more]
A0A068TUL7_COFCA	1.2e-56	80.58	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00026055001 PE=4 SV=1	[more]
W9R2Z6_9ROSA	7.5e-56	78.42	Vam6/Vps39-like protein OS=Morus notabilis GN=L484_020292 PE=4 SV=1	[more]
K4CGJ8_SOLLC	1.7e-55	77.70	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A0V0IXF1_SOLCH	1.7e-55	77.70	Putative vam6/Vps39-like protein-like OS=Solanum chacoense PE=4 SV=1	[more]

BLAST of CmoCh14G002640 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G36630.1	3.1e-53	72.66	Vacuolar sorting protein 39	[more]

BLAST of CmoCh14G002640 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659107576\|ref\|XP_008453745.1\|	1.3e-64	92.09	PREDICTED: vam6/Vps39-like protein [Cucumis melo]	[more]
gi\|449462842\|ref\|XP_004149149.1\|	1.6e-64	91.37	PREDICTED: vam6/Vps39-like protein [Cucumis sativus]	[more]
gi\|700198087\|gb\|KGN53245.1\|	1.6e-64	91.37	hypothetical protein Csa_4G038630 [Cucumis sativus]	[more]
gi\|661897331\|emb\|CDO99043.1\|	1.7e-56	80.58	unnamed protein product [Coffea canephora]	[more]
gi\|1009144655\|ref\|XP_015889919.1\|	3.7e-56	78.42	PREDICTED: vam6/Vps39-like protein [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001180	CNH_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0016192	vesicle-mediated transport
GO:0097576	vacuole fusion

Vocabulary: **Cellular Component**
Term	Definition
GO:0030897	HOPS complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042732	D-xylose metabolic process
biological_process	GO:0006487	protein N-linked glycosylation
biological_process	GO:0006623	protein targeting to vacuole
biological_process	GO:0097576	vacuole fusion
biological_process	GO:0016192	vesicle-mediated transport
cellular_component	GO:0030897	HOPS complex
cellular_component	GO:0005622	intracellular
cellular_component	GO:0009506	plasmodesma
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G002640.1	CmoCh14G002640.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001180	Citron homology (CNH) domain	PFAM	PF00780	CNH	coord: 33..105 score: 9.1
None	No IPR available	PANTHER	PTHR12894	CNH DOMAIN CONTAINING	coord: 33..168 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G002640	Wax gourd	cmowgoB0287
CmoCh14G002640	Wax gourd	cmowgoB0341
CmoCh14G002640	Wax gourd	cmowgoB0345
CmoCh14G002640	Cucurbita moschata (Rifu)	cmocmoB215
CmoCh14G002640	Cucurbita moschata (Rifu)	cmocmoB217
CmoCh14G002640	Cucurbita moschata (Rifu)	cmocmoB222
CmoCh14G002640	Cucurbita moschata (Rifu)	cmocmoB228
CmoCh14G002640	Cucumber (Gy14) v1	cgycmoB0146
CmoCh14G002640	Cucumber (Gy14) v1	cgycmoB1041
CmoCh14G002640	Cucumber (Gy14) v1	cgycmoB1062
CmoCh14G002640	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G002640	Cucurbita maxima (Rimu)	cmacmoB640
CmoCh14G002640	Cucurbita maxima (Rimu)	cmacmoB792
CmoCh14G002640	Cucurbita maxima (Rimu)	cmacmoB848
CmoCh14G002640	Wild cucumber (PI 183967)	cmocpiB230
CmoCh14G002640	Wild cucumber (PI 183967)	cmocpiB259
CmoCh14G002640	Cucumber (Chinese Long) v2	cmocuB227
CmoCh14G002640	Cucumber (Chinese Long) v2	cmocuB253
CmoCh14G002640	Cucumber (Chinese Long) v2	cmocuB255
CmoCh14G002640	Melon (DHL92) v3.5.1	cmomeB215
CmoCh14G002640	Melon (DHL92) v3.5.1	cmomeB236
CmoCh14G002640	Watermelon (Charleston Gray)	cmowcgB207
CmoCh14G002640	Watermelon (Charleston Gray)	cmowcgB211
CmoCh14G002640	Watermelon (Charleston Gray)	cmowcgB214
CmoCh14G002640	Watermelon (97103) v1	cmowmB214
CmoCh14G002640	Watermelon (97103) v1	cmowmB236
CmoCh14G002640	Watermelon (97103) v1	cmowmB237
CmoCh14G002640	Cucurbita pepo (Zucchini)	cmocpeB218
CmoCh14G002640	Cucurbita pepo (Zucchini)	cmocpeB240
CmoCh14G002640	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G002640	Cucurbita pepo (Zucchini)	cmocpeB259
CmoCh14G002640	Bottle gourd (USVL1VR-Ls)	cmolsiB230
CmoCh14G002640	Bottle gourd (USVL1VR-Ls)	cmolsiB215
CmoCh14G002640	Bottle gourd (USVL1VR-Ls)	cmolsiB218
CmoCh14G002640	Cucumber (Gy14) v2	cgybcmoB279
CmoCh14G002640	Cucumber (Gy14) v2	cgybcmoB712
CmoCh14G002640	Cucumber (Gy14) v2	cgybcmoB715
CmoCh14G002640	Melon (DHL92) v3.6.1	cmomedB224
CmoCh14G002640	Melon (DHL92) v3.6.1	cmomedB244
CmoCh14G002640	Melon (DHL92) v3.6.1	cmomedB268
CmoCh14G002640	Silver-seed gourd	carcmoB0214
CmoCh14G002640	Silver-seed gourd	carcmoB0334
CmoCh14G002640	Silver-seed gourd	carcmoB0347
CmoCh14G002640	Silver-seed gourd	carcmoB1087
CmoCh14G002640	Cucumber (Chinese Long) v3	cmocucB0270
CmoCh14G002640	Cucumber (Chinese Long) v3	cmocucB0302
CmoCh14G002640	Cucumber (Chinese Long) v3	cmocucB0305
CmoCh14G002640	Watermelon (97103) v2	cmowmbB239
CmoCh14G002640	Watermelon (97103) v2	cmowmbB230
CmoCh14G002640	Watermelon (97103) v2	cmowmbB235