CmoCh13G003060 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G003060
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDNA-directed RNA polymerase (2.7.7.6)
LocationCmo_Chr13 : 3317955 .. 3318310 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACTCTAGAGAGGAGTTATCCGGGAATAATACTCTTCCTTCCTTCTTATTGATTGATAATGTGTTAGGCGAAATTGGTGGAAGAAGCCATGGATACACTGATTGATAATGGAATCCGCGAACAACCAATGAGGGATGGCCATAATAAGGGTTACAAGTCATTTTTCGATGTAATTGTAATTGAAGGCAAGGGAAAGAGGGAAGATTGATTTCGGGAAGGAAACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTTGGTCCCTTACTTTCATTACATGGGGATTGCATCGCAATAGAGCTTTTCCAGACATTTAGCTTCAAACATAGGAGTTGCTAA

mRNA sequence

ATGAACTCTAGAGAGGAGTTATCCGGGAATAATACTCTTCCTTCCTTCTTATTGATTGATAATGCGAAATTGGTGGAAGAAGCCATGGATACACTGATTGATAATGGAATCCGCGAACAACCAATGAGGGATGGCCATAATAAGGGTTACAAGTCATTTTTCGATGCAAGGGAAAGAGGGAAGATTGATTTCGGGAAGGAAACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTTGGTCCCTTACTTTCATTACATGGGGATTGCATCGCAATAGAGCTTTTCCAGACATTTAGCTTCAAACATAGGAGTTGCTAA

Coding sequence (CDS)

ATGAACTCTAGAGAGGAGTTATCCGGGAATAATACTCTTCCTTCCTTCTTATTGATTGATAATGCGAAATTGGTGGAAGAAGCCATGGATACACTGATTGATAATGGAATCCGCGAACAACCAATGAGGGATGGCCATAATAAGGGTTACAAGTCATTTTTCGATGCAAGGGAAAGAGGGAAGATTGATTTCGGGAAGGAAACTCTGCTTGGCAAACGGGTCGATTATTCAGGACGTTCTGTGATTGTTGTTGGTCCCTTACTTTCATTACATGGGGATTGCATCGCAATAGAGCTTTTCCAGACATTTAGCTTCAAACATAGGAGTTGCTAA
Homology
[Close]
BLAST of CmoCh13G003060 vs. Swiss-Prot
Match: RPOC1_SPIOL (DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 2.7e-25
Identity = 68/102 (66.67%), Postives = 76/102 (74.51%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           LS + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LSTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPSLSLH-RCGLPREIAIELFQTF 409

[Close]
BLAST of CmoCh13G003060 vs. Swiss-Prot
Match: RPOC1_ILLOL (DNA-directed RNA polymerase subunit beta' OS=Illicium oligandrum GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.6e-25
Identity = 67/104 (64.42%), Postives = 77/104 (74.04%), Query Frame = 1 

Query: 5   EELSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDF 64
           + L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK   
Sbjct: 315 DPLTTSRSTPGELVLCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGR 374

Query: 65  GKETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
            +ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 375 FRETLLGKRVDYSGRSVIVVGPSLSLH-RCGLPREIAIELFQTF 416

[Close]
BLAST of CmoCh13G003060 vs. Swiss-Prot
Match: RPOC1_PHAVU (DNA-directed RNA polymerase subunit beta' OS=Phaseolus vulgaris GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.6e-25
Identity = 67/102 (65.69%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L+I   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 312 LTTSRSTPGELVICQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDIIE-GKEGRFR 371

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLH-----GDCIAIELFQTF 104
           ETLLGKRVDYSGRSVI+VGP LSLH     G+ IAIELFQTF
Sbjct: 372 ETLLGKRVDYSGRSVIIVGPSLSLHRCGLPGE-IAIELFQTF 411

[Close]
BLAST of CmoCh13G003060 vs. Swiss-Prot
Match: RPOC1_VITVI (DNA-directed RNA polymerase subunit beta' OS=Vitis vinifera GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.6e-25
Identity = 67/102 (65.69%), Postives = 76/102 (74.51%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPSLSLH-QCGLPREIAIELFQTF 409

[Close]
BLAST of CmoCh13G003060 vs. Swiss-Prot
Match: RPOC1_DIOEL (DNA-directed RNA polymerase subunit beta' OS=Dioscorea elephantipes GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 115.5 bits (288), Expect = 3.6e-25
Identity = 66/102 (64.71%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + ++P  L++   KLV+EA+DTL+DNGIR QPM+DGHNK YKSF D  E GK    +
Sbjct: 313 LATSRSMPGELVMCQEKLVQEAVDTLLDNGIRGQPMKDGHNKVYKSFSDVIE-GKEGRFR 372

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 373 ETLLGKRVDYSGRSVIVVGPSLSLH-QCGLPREIAIELFQTF 412

[Close]
BLAST of CmoCh13G003060 vs. TrEMBL
Match: A0A0D3M6I0_9ASPA (DNA-directed RNA polymerase subunit OS=Habenaria pantlingiana GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.1e-24
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + ++P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 314 LATSRSIPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 373

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 374 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 413

[Close]
BLAST of CmoCh13G003060 vs. TrEMBL
Match: A0A0U1VGQ9_9ASPA (DNA-directed RNA polymerase subunit OS=Nervilia aragoana GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.1e-24
Identity = 68/102 (66.67%), Postives = 76/102 (74.51%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LATSRSTPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKAYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 409

[Close]
BLAST of CmoCh13G003060 vs. TrEMBL
Match: D5IBP2_9ASPA (DNA-directed RNA polymerase subunit (Fragment) OS=Habenaria hexaptera GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 6.1e-24
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + ++P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 166 LATSRSIPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 225

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 226 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 265

[Close]
BLAST of CmoCh13G003060 vs. TrEMBL
Match: I6Q0L5_9ASPA (DNA-directed RNA polymerase subunit (Fragment) OS=Phragmipedium exstaminodium GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.0e-24
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 258 LATSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 317

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 318 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 357

[Close]
BLAST of CmoCh13G003060 vs. TrEMBL
Match: I6Q440_9ASPA (DNA-directed RNA polymerase subunit (Fragment) OS=Paphiopedilum wardii GN=rpoC1 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 8.0e-24
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 258 LATSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 317

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 318 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 357

[Close]
BLAST of CmoCh13G003060 vs. TAIR10
Match: ATCG00180.1 (ATCG00180.1 DNA-directed RNA polymerase family protein)

HSP 1 Score: 114.8 bits (286), Expect = 3.4e-26
Identity = 67/102 (65.69%), Postives = 76/102 (74.51%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LTTSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGP LSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPSLSLH-RCGLPREIAIELFQTF 409

[Close]
BLAST of CmoCh13G003060 vs. NCBI nr
Match: gi|129714403|gb|ABO31257.1| (rpoC1 (chloroplast) [Nervilia aragoana])

HSP 1 Score: 118.2 bits (295), Expect = 8.8e-24
Identity = 68/102 (66.67%), Postives = 76/102 (74.51%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 310 LATSRSTPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKAYKSFSDVIE-GKEGRFR 369

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 370 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 409

[Close]
BLAST of CmoCh13G003060 vs. NCBI nr
Match: gi|294440745|gb|ADE74776.1| (RNA polymerase beta' chain, partial (chloroplast) [Habenaria hexaptera])

HSP 1 Score: 118.2 bits (295), Expect = 8.8e-24
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + ++P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 166 LATSRSIPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 225

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 226 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 265

[Close]
BLAST of CmoCh13G003060 vs. NCBI nr
Match: gi|810932692|ref|YP_009129522.1| (RNA polymerase beta' subunit (chloroplast) [Habenaria pantlingiana])

HSP 1 Score: 118.2 bits (295), Expect = 8.8e-24
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + ++P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 314 LATSRSIPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 373

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 374 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 413

[Close]
BLAST of CmoCh13G003060 vs. NCBI nr
Match: gi|953244749|ref|YP_009179944.1| (DNA-directed RNA polymerase beta' chain (chloroplast) [Bletilla striata])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 69/104 (66.35%), Postives = 77/104 (74.04%), Query Frame = 1 

Query: 5   EELSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDF 64
           E L+ + + P  L++   KLV+EA+DTL DNGIR QPMRDGHNK YKSF D  E GK   
Sbjct: 312 ELLATSRSTPGELVMCQEKLVQEAVDTLFDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGR 371

Query: 65  GKETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
            +ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 372 FRETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 413

[Close]
BLAST of CmoCh13G003060 vs. NCBI nr
Match: gi|944541386|ref|YP_009175264.1| (RNA polymerase beta' subunit (chloroplast) [Phragmipedium longifolium])

HSP 1 Score: 117.9 bits (294), Expect = 1.2e-23
Identity = 68/102 (66.67%), Postives = 77/102 (75.49%), Query Frame = 1 

Query: 7   LSGNNTLPSFLLIDNAKLVEEAMDTLIDNGIREQPMRDGHNKGYKSFFDARERGKIDFGK 66
           L+ + + P  L++   KLV+EA+DTL+DNGIR QPMRDGHNK YKSF D  E GK    +
Sbjct: 314 LATSRSTPGELVMCQEKLVQEAVDTLLDNGIRGQPMRDGHNKVYKSFSDVIE-GKEGRFR 373

Query: 67  ETLLGKRVDYSGRSVIVVGPLLSLHGDC-----IAIELFQTF 104
           ETLLGKRVDYSGRSVIVVGPLLSLH  C     IAIELFQTF
Sbjct: 374 ETLLGKRVDYSGRSVIVVGPLLSLH-QCGLPREIAIELFQTF 413

The following BLAST results are available for this feature:
BLAST of CmoCh13G003060 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RPOC1_SPIOL2.7e-2566.67DNA-directed RNA polymerase subunit beta' OS=Spinacia oleracea GN=rpoC1 PE=3 SV=... [more]
RPOC1_ILLOL3.6e-2564.42DNA-directed RNA polymerase subunit beta' OS=Illicium oligandrum GN=rpoC1 PE=3 S... [more]
RPOC1_PHAVU3.6e-2565.69DNA-directed RNA polymerase subunit beta' OS=Phaseolus vulgaris GN=rpoC1 PE=3 SV... [more]
RPOC1_VITVI3.6e-2565.69DNA-directed RNA polymerase subunit beta' OS=Vitis vinifera GN=rpoC1 PE=3 SV=1[more]
RPOC1_DIOEL3.6e-2564.71DNA-directed RNA polymerase subunit beta' OS=Dioscorea elephantipes GN=rpoC1 PE=... [more]
BLAST of CmoCh13G003060 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0D3M6I0_9ASPA6.1e-2466.67DNA-directed RNA polymerase subunit OS=Habenaria pantlingiana GN=rpoC1 PE=3 SV=1[more]
A0A0U1VGQ9_9ASPA6.1e-2466.67DNA-directed RNA polymerase subunit OS=Nervilia aragoana GN=rpoC1 PE=3 SV=1[more]
D5IBP2_9ASPA6.1e-2466.67DNA-directed RNA polymerase subunit (Fragment) OS=Habenaria hexaptera GN=rpoC1 P... [more]
I6Q0L5_9ASPA8.0e-2466.67DNA-directed RNA polymerase subunit (Fragment) OS=Phragmipedium exstaminodium GN... [more]
I6Q440_9ASPA8.0e-2466.67DNA-directed RNA polymerase subunit (Fragment) OS=Paphiopedilum wardii GN=rpoC1 ... [more]
BLAST of CmoCh13G003060 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00180.13.4e-2665.69ATCG00180.1 DNA-directed RNA polymerase family protein[more]
BLAST of CmoCh13G003060 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|129714403|gb|ABO31257.1|8.8e-2466.67rpoC1 (chloroplast) [Nervilia aragoana][more]
gi|294440745|gb|ADE74776.1|8.8e-2466.67RNA polymerase beta' chain, partial (chloroplast) [Habenaria hexaptera][more]
gi|810932692|ref|YP_009129522.1|8.8e-2466.67RNA polymerase beta' subunit (chloroplast) [Habenaria pantlingiana][more]
gi|953244749|ref|YP_009179944.1|1.2e-2366.35DNA-directed RNA polymerase beta' chain (chloroplast) [Bletilla striata][more]
gi|944541386|ref|YP_009175264.1|1.2e-2366.67RNA polymerase beta' subunit (chloroplast) [Phragmipedium longifolium][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0009536 plastid
molecular_function GO:0016779 nucleotidyltransferase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003060.1CmoCh13G003060.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 14..103
score: 8.0
NoneNo IPR availableunknownSSF64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 13..103
score: 1.37

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G003060Wild cucumber (PI 183967)cmocpiB192
CmoCh13G003060Cucumber (Chinese Long) v2cmocuB188
CmoCh13G003060Watermelon (Charleston Gray)cmowcgB179
CmoCh13G003060Watermelon (97103) v1cmowmB186
CmoCh13G003060Cucurbita pepo (Zucchini)cmocpeB200
CmoCh13G003060Bottle gourd (USVL1VR-Ls)cmolsiB203
CmoCh13G003060Cucumber (Gy14) v2cgybcmoB057
CmoCh13G003060Melon (DHL92) v3.6.1cmomedB203
CmoCh13G003060Cucumber (Chinese Long) v3cmocucB0221
CmoCh13G003060Watermelon (97103) v2cmowmbB198
CmoCh13G003060Wax gourdcmowgoB0259
CmoCh13G003060Cucurbita moschata (Rifu)cmocmoB135
CmoCh13G003060Cucumber (Gy14) v1cgycmoB0594
CmoCh13G003060Cucurbita maxima (Rimu)cmacmoB179
CmoCh13G003060Cucurbita maxima (Rimu)cmacmoB218