CmoCh13G000710 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G000710
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionCl574_1
LocationCmo_Chr13 : 419437 .. 420685 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACGCTCGATGGATCGTCGACCAAAACAATAGTCACGAGCAGCGTAGAGGCGTTGTTTCTGTATGCAAACACAAACAAAAAACAGAAAAGCACGCTCCCTACGCAGGCATTATCCTGTTCAGGTTCAAAGGGACTATCTCAGCCTGACCAGTTAGCCCCGGACGAGGAGCTACACTTGGTCGAGGCACCCCCGGTGCATTTCTTAAGTTAATATGATGAAAAGGACAAGGTCAAAACATAAAGCAAAGTAACAACTTTTTCTTAGTTCCAATAGATAGAGAAACAAAGCAGACGAACTTAAATACAGCCTGTGAAAGGGAATGAACAAGCTAAACTTTGTACTCTTCCATGGCCTGAAGCTGGAGACTCGAGCGAGTATTTAATTTCAGTTTTGGTCATCCAATCATCGATGCCGAGTCTCCTGCACTTCCAACCCTCTTCTTCGTGAGCAGTCCTGCATATTAGTATACCGTAAGAACCAACAAAAGGAATTAACTCATTCATATATATGAGTCTCTTTGTAAGAGCTCAACCCCACCGCTAGATGATATTGTTTGCTTTGACCTGTTACGTATCATCGTCAGCCTCACGGTTTTAAAACGTGTCTGCTAGGAAGAGGTTTCCACGCCCTTATAAGGAATGCTTCATCCCCTCTCCAACCGATGTAAGATCTCACAATTCACCCCCCCTTGGGAGCTAGCGTCCTTGCTGGCACACCGCCCAGTGACCGACTCTGATACCATTTGTAACAGTCAAGCCCACTGCTAGAATATATTGTTCGCTATGGCCTATTATGTATTGCTGGAAGCCTCATGGTTTTAAAACACGTTTGCTACGAATAGGTTTCCACCCCTTATAAGGAATGTTTCGTTCCCCTCTTCAACCGATGTGAAAGCTCACCCTTAAAGAACCAATATGAGAACGCGTGGTACCAAATCCTTTCAACCAAGGAGTAAAATCAAAAGGCCAAAAGTTTAGTGATTACTAACCTTCACCTCTTCAGGGAGTCCATGTAGCTTGCAGGCAAGTAGATTTCTCCACCAGTTTCACCATGTTGTTCACCACTAACGGTTTTCTTTGCAGCCAAGAACTCAGCACTCATAGCATCCATCCCTTGCTTCAGAGCTTCCTCTGCACTCCCGTACCCGTGTTCTTCAGCATACTTCCGCACATCCTCGGTTATCTTCATGGAGCAGAACTTAGGTCCACACATGGAACAGAAGTGAGCCACCTTGGCACCTTCTGA

mRNA sequence

ATGTACGCTCGATGGATCGTCGACCAAAACAATAGTCACGAGCAGCGTAGAGGCGTTGTTTCTGGACTATCTCAGCCTGACCAGTTAGCCCCGGACGAGGAGCTACACTTGGTCGAGGCACCCCCGCCTGTGAAAGGGAATGAACAAGCTAAACTTTGTACTCTTCCATGGCCTGAAGCTGGAGACTCGAGCGAGCAAGTAGATTTCTCCACCAGTTTCACCATGTTGTTCACCACTAACGGTTTTCTTTGCAGCCAAGAACTCAGCACTCATAGCATCCATCCCTTGCTTCAGAGCTTCCTCTGCACTCCCGTACCCGTGTTCTTCAGCATACTTCCGCACATCCTCGGTTATCTTCATGGAGCAGAACTTAGGTCCACACATGGAACAGAAGTGAGCCACCTTGGCACCTTCTGA

Coding sequence (CDS)

ATGTACGCTCGATGGATCGTCGACCAAAACAATAGTCACGAGCAGCGTAGAGGCGTTGTTTCTGGACTATCTCAGCCTGACCAGTTAGCCCCGGACGAGGAGCTACACTTGGTCGAGGCACCCCCGCCTGTGAAAGGGAATGAACAAGCTAAACTTTGTACTCTTCCATGGCCTGAAGCTGGAGACTCGAGCGAGCAAGTAGATTTCTCCACCAGTTTCACCATGTTGTTCACCACTAACGGTTTTCTTTGCAGCCAAGAACTCAGCACTCATAGCATCCATCCCTTGCTTCAGAGCTTCCTCTGCACTCCCGTACCCGTGTTCTTCAGCATACTTCCGCACATCCTCGGTTATCTTCATGGAGCAGAACTTAGGTCCACACATGGAACAGAAGTGAGCCACCTTGGCACCTTCTGA
Homology
[Close]
BLAST of CmoCh13G000710 vs. TrEMBL
Match: A0A0A9QKT0_ARUDO (Cl574_1 OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.1e-06
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 1 

Query: 67  VDFSTSFTMLFTTNGFLCSQELSTHSIHPLLQSFLCTPVPVFFSILPHILGYLHGAELRS 126
           VD  + FTMLF TN F CSQ+ STHSIH L  SF+   V +F SIL +IL   H  +L  
Sbjct: 36  VDLPSCFTMLFPTNCFSCSQKFSTHSIHSLSHSFVYCSVTMFISILSNILCDFHRTKLGP 95

Query: 127 TH 129
           TH
Sbjct: 96  TH 97

The following BLAST results are available for this feature:
BLAST of CmoCh13G000710 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh13G000710 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9QKT0_ARUDO1.1e-0653.23Cl574_1 OS=Arundo donax PE=4 SV=1[more]
BLAST of CmoCh13G000710 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh13G000710 vs. NCBI nr
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G000710.1CmoCh13G000710.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G000710Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G000710Cucurbita maxima (Rimu)cmacmoB458
CmoCh13G000710Cucurbita maxima (Rimu)cmacmoB577
CmoCh13G000710Wild cucumber (PI 183967)cmocpiB206
CmoCh13G000710Wild cucumber (PI 183967)cmocpiB214
CmoCh13G000710Wild cucumber (PI 183967)cmocpiB217
CmoCh13G000710Cucumber (Chinese Long) v2cmocuB204
CmoCh13G000710Cucumber (Chinese Long) v2cmocuB214
CmoCh13G000710Melon (DHL92) v3.5.1cmomeB178
CmoCh13G000710Melon (DHL92) v3.5.1cmomeB181
CmoCh13G000710Watermelon (Charleston Gray)cmowcgB180
CmoCh13G000710Watermelon (Charleston Gray)cmowcgB184
CmoCh13G000710Watermelon (97103) v1cmowmB173
CmoCh13G000710Watermelon (97103) v1cmowmB197
CmoCh13G000710Cucurbita pepo (Zucchini)cmocpeB211
CmoCh13G000710Cucurbita pepo (Zucchini)cmocpeB202
CmoCh13G000710Bottle gourd (USVL1VR-Ls)cmolsiB186
CmoCh13G000710Bottle gourd (USVL1VR-Ls)cmolsiB191
CmoCh13G000710Cucumber (Gy14) v2cgybcmoB069
CmoCh13G000710Melon (DHL92) v3.6.1cmomedB198
CmoCh13G000710Melon (DHL92) v3.6.1cmomedB203
CmoCh13G000710Silver-seed gourdcarcmoB0517
CmoCh13G000710Silver-seed gourdcarcmoB0594
CmoCh13G000710Cucumber (Chinese Long) v3cmocucB0236
CmoCh13G000710Cucumber (Chinese Long) v3cmocucB0253
CmoCh13G000710Watermelon (97103) v2cmowmbB204
CmoCh13G000710Watermelon (97103) v2cmowmbB209
CmoCh13G000710Wax gourdcmowgoB0238
CmoCh13G000710Wax gourdcmowgoB0245
CmoCh13G000710Cucurbita moschata (Rifu)cmocmoB173
CmoCh13G000710Cucurbita moschata (Rifu)cmocmoB180
CmoCh13G000710Cucurbita moschata (Rifu)cmocmoB189
CmoCh13G000710Cucumber (Gy14) v1cgycmoB0384
CmoCh13G000710Cucumber (Gy14) v1cgycmoB0402