CmoCh11G013010 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGGCTATGAAGATGAAGGTCTATTTGCGTGCTCAAGGGGTGTGGGACCAATCGAATCAACTGAGTCTCTGGATAGTCTTGATGAAAGGAAGGATCAAATGGCCTTAGCAGCTATCTATCAAGCAATCCCGGAGGAGATGTTGTTTTTATTAGCAGAGAAAAAGACAGCAAAAGAAGCATGGCAGACGTTAAAAACTATCCATGTCGGTGCTGAACGTGTAAAGGAGGCAAAGATCCAAACTCTGAAGATTGAGTTCGAAATTATGAATATGAAGGAGTCCGAGACTATTGATGATTATGCAGCAAGGTTGACAGAAGTTGTTAATAAAATACATACTTTTGGAGACAAGTTTGAAGAGGCATACTCGGTGAAAAAATTTCTCCGCTCAGTACCTCCTAAGTTTCTTCATATCGCGTCGGCAATAGAGCAATTTGCCGATTTAAAGGTGATGACCATGGAGGAAGTCATCGGTCGTCTTAAAGCATATGATGAACGGATCGGTGGCAGCAAAGAGAATGCTGAGCATGTCTTATTGACTCAAGGAGAATGGAAAGCAAAAGAACGTAGCGACAATGGAGGCCATAGCCGAGGGCGAGGTCGCAGTGGTCGCTGGAGAGGGAGAGGTCATGGACGTAGAAACGACTCGTTTCATCAAGAGAAGAAGGCTGACAAGAGCAAGGTAAGATGCTACAATTGTCAAGACCTAGGCCACTATGCCTCAGACTGTCGGAAGGTGAAGTGTTATAATTGTCAAAAGATTGGCCATTATGCATCCGACTGTAGATCGAAGAAATGGGAGGATCAGGCGCACTTGGCTGAGACGCAAAGTGATGAGGATGAGCCAGCCTTACTTACAGCACAAGTTTGTGAAGTCCGAACTCTCGGTTCACCAGAGTTGACGGAGATGGCTCTTTATGAAGAGAAGGTTGTCCCAGGAGAAATTGAGAAGGTAAATAACATTTGGTTCCTAGATACGGGAGCCAGCAATCACATGACTGGTTGTCGAAGTTGGTTCTCGGAATTGAAAGAGTCAGTGACCGGCACGGTGAAGTTCGGAGATGGATCACTTGGAGAGATAAAAGGACGTGGAGATGTGAAGGCTGCGTCTGTGAAAAAAACAGAGAAGATGATCGATGAGGAGAAAATCGATGGCTTTGTGAAGATTGAATCGGAGAAAAAAACAGAGAAGCGAGAAGAGAAGAAAAGCGATGGTGAGAAAATCGTTGGCATTGTGAAGTTTGAATCCGAGGAGAGGGGCGATGCCGTTGTGGCGGAGGTCCAGAATGTGGCATCGGAGGTAGCGAAAGCAAAGAAGATAAAAGAGAAGGAGGTCACCTATGATGGCGAGAAGAAGGATAAGGAGGACGGAAACAATGACGGTGCTATTGAAAAACAGATCGCCGGAGAAACGAAAGCGGAGAAGGAGAAAGAGGCCATTGTTTCCGGCAGTGCAATTGAAGTAGCACAGGTAATTAAACCTGTTGAGGAAAAGCCATTGGTCGGACAAGTAGAACAGGTAATTAAAACTATCGATGAAAAGCAGTTGCCCATTGAAAGGAAGACAAAGAAGAAGGAAGGCAGAGATAATGGCGGCAGCTTTCATCCTATGAAGCAGAGTATATTATGGCGGCGTCAGCTGCTTGTCAAGGAATATGGTTAG ATGGGCTATGAAGATGAAGGTCTATTTGCGTGCTCAAGGGGTGTGGGACCAATCGAATCAACTGAGTCTCTGGATAGTCTTGATGAAAGGAAGGATCAAATGGCCTTAGCAGCTATCTATCAAGCAATCCCGGAGGAGATGTTGTTTTTATTAGCAGAGAAAAAGACAGCAAAAGAAGCATGGCAGACGTTAAAAACTATCCATGTCGGTGCTGAACGTGTAAAGGAGGCAAAGATCCAAACTCTGAAGATTGAGTTCGAAATTATGAATATGAAGGAGTCCGAGACTATTGATGATTATGCAGCAAGGTTGACAGAAGTTGTTAATAAAATACATACTTTTGGAGACAAGTTTGAAGAGGCATACTCGGTGAAAAAATTTCTCCGCTCAGTACCTCCTAAGTTTCTTCATATCGCGTCGGCAATAGAGCAATTTGCCGATTTAAAGGTGATGACCATGGAGGAAGTCATCGGTCGTCTTAAAGCATATGATGAACGGATCGGTGGCAGCAAAGAGAATGCTGAGCATGTCTTATTGACTCAAGGAGAATGGAAAGCAAAAGAACGTAGCGACAATGGAGGCCATAGCCGAGGGCGAGGTCGCAGTGGTCGCTGGAGAGGGAGAGGTCATGGACGTAGAAACGACTCGTTTCATCAAGAGAAGAAGGCTGACAAGAGCAAGGTAAGATGCTACAATTGTCAAGACCTAGGCCACTATGCCTCAGACTGTCGGAAGGTGAAGTGTTATAATTGTCAAAAGATTGGCCATTATGCATCCGACTGTAGATCGAAGAAATGGGAGGATCAGGCGCACTTGGCTGAGACGCAAAGTGATGAGGATGAGCCAGCCTTACTTACAGCACAAGTTTGTGAAGTCCGAACTCTCGGTTCACCAGAGTTGACGGAGATGGCTCTTTATGAAGAGAAGGTTGTCCCAGGAGAAATTGAGAAGGTAAATAACATTTGGTTCCTAGATACGGGAGCCAGCAATCACATGACTGGTTGTCGAAGTTGGTTCTCGGAATTGAAAGAGTCAGTGACCGGCACGGTGAAGTTCGGAGATGGATCACTTGGAGAGATAAAAGGACGTGGAGATGTGAAGGCTGCGTCTGTGAAAAAAACAGAGAAGATGATCGATGAGGAGAAAATCGATGGCTTTGTGAAGATTGAATCGGAGAAAAAAACAGAGAAGCGAGAAGAGAAGAAAAGCGATGGTGAGAAAATCGTTGGCATTGTGAAGTTTGAATCCGAGGAGAGGGGCGATGCCGTTGTGGCGGAGGTCCAGAATGTGGCATCGGAGGTAGCGAAAGCAAAGAAGATAAAAGAGAAGGAGGTCACCTATGATGGCGAGAAGAAGGATAAGGAGGACGGAAACAATGACGGTGCTATTGAAAAACAGATCGCCGGAGAAACGAAAGCGGAGAAGGAGAAAGAGGCCATTGTTTCCGGCAGTGCAATTGAAGTAGCACAGGTAATTAAACCTGTTGAGGAAAAGCCATTGGTCGGACAAGTAGAACAGGTAATTAAAACTATCGATGAAAAGCAGTTGCCCATTGAAAGGAAGACAAAGAAGAAGGAAGGCAGAGATAATGGCGGCAGCTTTCATCCTATGAAGCAGAGTATATTATGGCGGCGTCAGCTGCTTGTCAAGGAATATGGTTAG ATGGGCTATGAAGATGAAGGTCTATTTGCGTGCTCAAGGGGTGTGGGACCAATCGAATCAACTGAGTCTCTGGATAGTCTTGATGAAAGGAAGGATCAAATGGCCTTAGCAGCTATCTATCAAGCAATCCCGGAGGAGATGTTGTTTTTATTAGCAGAGAAAAAGACAGCAAAAGAAGCATGGCAGACGTTAAAAACTATCCATGTCGGTGCTGAACGTGTAAAGGAGGCAAAGATCCAAACTCTGAAGATTGAGTTCGAAATTATGAATATGAAGGAGTCCGAGACTATTGATGATTATGCAGCAAGGTTGACAGAAGTTGTTAATAAAATACATACTTTTGGAGACAAGTTTGAAGAGGCATACTCGGTGAAAAAATTTCTCCGCTCAGTACCTCCTAAGTTTCTTCATATCGCGTCGGCAATAGAGCAATTTGCCGATTTAAAGGTGATGACCATGGAGGAAGTCATCGGTCGTCTTAAAGCATATGATGAACGGATCGGTGGCAGCAAAGAGAATGCTGAGCATGTCTTATTGACTCAAGGAGAATGGAAAGCAAAAGAACGTAGCGACAATGGAGGCCATAGCCGAGGGCGAGGTCGCAGTGGTCGCTGGAGAGGGAGAGGTCATGGACGTAGAAACGACTCGTTTCATCAAGAGAAGAAGGCTGACAAGAGCAAGGTAAGATGCTACAATTGTCAAGACCTAGGCCACTATGCCTCAGACTGTCGGAAGGTGAAGTGTTATAATTGTCAAAAGATTGGCCATTATGCATCCGACTGTAGATCGAAGAAATGGGAGGATCAGGCGCACTTGGCTGAGACGCAAAGTGATGAGGATGAGCCAGCCTTACTTACAGCACAAGTTTGTGAAGTCCGAACTCTCGGTTCACCAGAGTTGACGGAGATGGCTCTTTATGAAGAGAAGGTTGTCCCAGGAGAAATTGAGAAGGTAAATAACATTTGGTTCCTAGATACGGGAGCCAGCAATCACATGACTGGTTGTCGAAGTTGGTTCTCGGAATTGAAAGAGTCAGTGACCGGCACGGTGAAGTTCGGAGATGGATCACTTGGAGAGATAAAAGGACGTGGAGATGTGAAGGCTGCGTCTGTGAAAAAAACAGAGAAGATGATCGATGAGGAGAAAATCGATGGCTTTGTGAAGATTGAATCGGAGAAAAAAACAGAGAAGCGAGAAGAGAAGAAAAGCGATGGTGAGAAAATCGTTGGCATTGTGAAGTTTGAATCCGAGGAGAGGGGCGATGCCGTTGTGGCGGAGGTCCAGAATGTGGCATCGGAGGTAGCGAAAGCAAAGAAGATAAAAGAGAAGGAGGTCACCTATGATGGCGAGAAGAAGGATAAGGAGGACGGAAACAATGACGGTGCTATTGAAAAACAGATCGCCGGAGAAACGAAAGCGGAGAAGGAGAAAGAGGCCATTGTTTCCGGCAGTGCAATTGAAGTAGCACAGGTAATTAAACCTGTTGAGGAAAAGCCATTGGTCGGACAAGTAGAACAGGTAATTAAAACTATCGATGAAAAGCAGTTGCCCATTGAAAGGAAGACAAAGAAGAAGGAAGGCAGAGATAATGGCGGCAGCTTTCATCCTATGAAGCAGAGTATATTATGGCGGCGTCAGCTGCTTGTCAAGGAATATGGTTAG
BLAST of CmoCh11G013010 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 70.1 bits (170), Expect = 8.7e-11 Identity = 79/340 (23.24%), Postives = 136/340 (40.00%), Query Frame = 1
BLAST of CmoCh11G013010 vs. TrEMBL
Match: A0A0A9DE89_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1) HSP 1 Score: 235.7 bits (600), Expect = 1.3e-58 Identity = 133/276 (48.19%), Postives = 176/276 (63.77%), Query Frame = 1
BLAST of CmoCh11G013010 vs. TrEMBL
Match: C6JSM1_SORBI (Putative uncharacterized protein Sb1475s002010 OS=Sorghum bicolor GN=Sb1475s002010 PE=4 SV=1) HSP 1 Score: 225.7 bits (574), Expect = 1.4e-55 Identity = 150/404 (37.13%), Postives = 220/404 (54.46%), Query Frame = 1
BLAST of CmoCh11G013010 vs. TrEMBL
Match: Q10RM4_ORYSJ (Retrotransposon protein, putative, unclassified OS=Oryza sativa subsp. japonica GN=LOC_Os03g05850 PE=4 SV=1) HSP 1 Score: 223.4 bits (568), Expect = 6.8e-55 Identity = 144/363 (39.67%), Postives = 205/363 (56.47%), Query Frame = 1
BLAST of CmoCh11G013010 vs. TrEMBL
Match: B8BDZ6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4 SV=1) HSP 1 Score: 223.0 bits (567), Expect = 8.9e-55 Identity = 142/361 (39.34%), Postives = 206/361 (57.06%), Query Frame = 1
BLAST of CmoCh11G013010 vs. TrEMBL
Match: A0A0D3A1E3_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1) HSP 1 Score: 221.9 bits (564), Expect = 2.0e-54 Identity = 138/361 (38.23%), Postives = 214/361 (59.28%), Query Frame = 1
BLAST of CmoCh11G013010 vs. NCBI nr
Match: gi|923695303|ref|XP_013657908.1| (PREDICTED: uncharacterized protein LOC106362576 [Brassica napus]) HSP 1 Score: 230.3 bits (586), Expect = 8.0e-57 Identity = 135/351 (38.46%), Postives = 211/351 (60.11%), Query Frame = 1
BLAST of CmoCh11G013010 vs. NCBI nr
Match: gi|721687640|ref|XP_010239308.1| (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Brachypodium distachyon]) HSP 1 Score: 227.6 bits (579), Expect = 5.2e-56 Identity = 137/365 (37.53%), Postives = 219/365 (60.00%), Query Frame = 1
BLAST of CmoCh11G013010 vs. NCBI nr
Match: gi|253759675|ref|XP_002488942.1| (hypothetical protein SORBIDRAFT_1475s002010 [Sorghum bicolor]) HSP 1 Score: 225.7 bits (574), Expect = 2.0e-55 Identity = 150/404 (37.13%), Postives = 220/404 (54.46%), Query Frame = 1
BLAST of CmoCh11G013010 vs. NCBI nr
Match: gi|922464861|ref|XP_013633028.1| (PREDICTED: uncharacterized protein LOC106338643 [Brassica oleracea var. oleracea]) HSP 1 Score: 223.4 bits (568), Expect = 9.8e-55 Identity = 134/348 (38.51%), Postives = 205/348 (58.91%), Query Frame = 1
BLAST of CmoCh11G013010 vs. NCBI nr
Match: gi|108706239|gb|ABF94034.1| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]) HSP 1 Score: 223.4 bits (568), Expect = 9.8e-55 Identity = 144/363 (39.67%), Postives = 205/363 (56.47%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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