CmoCh09G005070 (gene) Cucurbita moschata (Rifu)

NameCmoCh09G005070
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionProtein FAM32A-like protein
LocationCmo_Chr09 : 2361916 .. 2362730 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCGGAGTACGAGAACGTGGTGGTGGGGAAATTAAGGCTGAAGGGGAAGGCCTTGGGCGTAAGAGGAGATGGAATCAGGAAGAAAAAGAAGTCGAAGAAGCAGTTTAACAATTTTTCTCAAACTGTCAGAGAAGACGATCTCTCACCAGGTTAGTTGATTTGTTCTGAATTTCTCGTTGAATTTTGTTTGGAGATGATTGAGCGTTGTTTTAATGCTAAATTGTCAAGAATTTGATATATATGGAACAGAGTGGTTGGTTAGAAACTTGAATTTGTTTGAAGAAATTGTTATCAGATCTTTTGGAAGACGAGTTCAAGTAGTTAGGTTTTTCAAGCTGATTAGATCATGAATTCACGGGGCTTCAATTATGCAGATACAGTAATCTTAGACTTTTAGAGTTAAAACAAGATTTAATCCTACTTTGGTCTCTGTAATTACTTGTTCATTCATCTCGTGTAAATTCTGAAACACTTCATGCAAATAAAAAATGTTTCAAAATCTTCATGGTTCGAGTGAATTTACGGAATTCCTTTGATCGAGTAATTTCATTTAGCTTATCGACATCTTTTTCTTTTGGAGATTGTTAGGAAATGGACGCTACTTCATTGGTTGACTGTTCTAAAGAGAACCTGAACATGAACGATATGCTAACACCTGGGGAGAGGCGATATCTTCAGCAATGGGAGAAGATTGATGTTCAAAGAATAGCAAAGATGGCCATAAAATCTCATCGGGATCATATTCACGAATTCAATCAATATCTTACCAATCTGAGTGAACACCATGATATTCCTAAAATCGGGCCCGGCTAA

mRNA sequence

ATGTCGGAGTACGAGAACGTGGTGGTGGGGAAATTAAGGCTGAAGGGGAAGGCCTTGGGCGTAAGAGGAGATGGAATCAGGAAGAAAAAGAAGTCGAAGAAGCAGTTTAACAATTTTTCTCAAACTGTCAGAGAAGACGATCTCTCACCAGGTTAATCTTTTGGAAGACGAGTTCAAGAAATGGACGCTACTTCATTGGTTGACTGTTCTAAAGAGAACCTGAACATGAACGATATGCTAACACCTGGGGAGAGGCGATATCTTCAGCAATGGGAGAAGATTGATGTTCAAAGAATAGCAAAGATGGCCATAAAATCTCATCGGGATCATATTCACGAATTCAATCAATATCTTACCAATCTGAGTGAACACCATGATATTCCTAAAATCGGGCCCGGCTAA

Coding sequence (CDS)

ATGGACGCTACTTCATTGGTTGACTGTTCTAAAGAGAACCTGAACATGAACGATATGCTAACACCTGGGGAGAGGCGATATCTTCAGCAATGGGAGAAGATTGATGTTCAAAGAATAGCAAAGATGGCCATAAAATCTCATCGGGATCATATTCACGAATTCAATCAATATCTTACCAATCTGAGTGAACACCATGATATTCCTAAAATCGGGCCCGGCTAA
BLAST of CmoCh09G005070 vs. Swiss-Prot
Match: FA32A_BOVIN (Protein FAM32A OS=Bos taurus GN=FAM32A PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.2e-06
Identity = 21/53 (39.62%), Postives = 35/53 (66.04%), Query Frame = 1

Query: 18  DMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHEFNQYLTNLSEHHDIPKI 71
           D  TP +  + +  EK  ++RI K A K+H+  + +FN++L  L+EH+DIPK+
Sbjct: 56  DKRTPAQAAFEKMQEKRQMERILKKASKTHKQRVEDFNRHLDTLTEHYDIPKV 108

BLAST of CmoCh09G005070 vs. Swiss-Prot
Match: FA32A_HUMAN (Protein FAM32A OS=Homo sapiens GN=FAM32A PE=1 SV=2)

HSP 1 Score: 50.8 bits (120), Expect = 7.2e-06
Identity = 21/53 (39.62%), Postives = 35/53 (66.04%), Query Frame = 1

Query: 18  DMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHEFNQYLTNLSEHHDIPKI 71
           D  TP +  + +  EK  ++RI K A K+H+  + +FN++L  L+EH+DIPK+
Sbjct: 56  DKRTPAQAAFEKMQEKRQMERILKKASKTHKQRVEDFNRHLDTLTEHYDIPKV 108

BLAST of CmoCh09G005070 vs. Swiss-Prot
Match: FA32A_MOUSE (Protein FAM32A OS=Mus musculus GN=Fam32a PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.2e-06
Identity = 21/53 (39.62%), Postives = 35/53 (66.04%), Query Frame = 1

Query: 18  DMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHEFNQYLTNLSEHHDIPKI 71
           D  TP +  + +  EK  ++RI K A K+H+  + +FN++L  L+EH+DIPK+
Sbjct: 56  DKRTPAQAAFEKMQEKRQMERILKKASKTHKQRVEDFNRHLDTLTEHYDIPKV 108

BLAST of CmoCh09G005070 vs. Swiss-Prot
Match: FA32A_PONAB (Protein FAM32A OS=Pongo abelii GN=FAM32A PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.2e-06
Identity = 21/53 (39.62%), Postives = 35/53 (66.04%), Query Frame = 1

Query: 18  DMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHEFNQYLTNLSEHHDIPKI 71
           D  TP +  + +  EK  ++RI K A K+H+  + +FN++L  L+EH+DIPK+
Sbjct: 56  DKRTPAQAAFEKMQEKRQMERILKKASKTHKQRVEDFNRHLDTLTEHYDIPKV 108

BLAST of CmoCh09G005070 vs. Swiss-Prot
Match: FA32A_RAT (Protein FAM32A OS=Rattus norvegicus GN=Fam32a PE=3 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 7.2e-06
Identity = 21/53 (39.62%), Postives = 35/53 (66.04%), Query Frame = 1

Query: 18  DMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHEFNQYLTNLSEHHDIPKI 71
           D  TP +  + +  EK  ++RI K A K+H+  + +FN++L  L+EH+DIPK+
Sbjct: 56  DKRTPAQAAFEKMQEKRQMERILKKASKTHKQRVEDFNRHLDTLTEHYDIPKV 108

BLAST of CmoCh09G005070 vs. TrEMBL
Match: A0A0A0LDT5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881680 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 2.1e-20
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1

Query: 4   TSLVDCSKENLN-------MNDMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHEFNQ 63
           TSLVDCSKE           +DMLT  ERRYL+QWEKI++QR+AKMA KSHRD I EFNQ
Sbjct: 56  TSLVDCSKETDGGGSGKGLYDDMLTAAERRYLRQWEKINLQRMAKMASKSHRDRIQEFNQ 115

Query: 64  YLTNLSEHHDIPKIGPG 74
            L NLSEHHDIPK+GPG
Sbjct: 116 CLANLSEHHDIPKVGPG 132

BLAST of CmoCh09G005070 vs. TrEMBL
Match: B9H7C0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15980g PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 5.2e-19
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 1

Query: 1   MDATSLVDCSKENLNMNDMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHEFNQYLTN 60
           M+ T   D   +    +D LTP E+RYLQQWEKID QR+ KMA KSHRD I EFNQYL N
Sbjct: 67  MNETDKCDEQGQTAKYDDHLTPAEKRYLQQWEKIDTQRMVKMASKSHRDRIQEFNQYLAN 126

Query: 61  LSEHHDIPKIGPG 74
           LSEH+DIPK+GPG
Sbjct: 127 LSEHYDIPKVGPG 139

BLAST of CmoCh09G005070 vs. TrEMBL
Match: A0A0S3RC90_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G089300 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.3e-17
Identity = 41/64 (64.06%), Postives = 55/64 (85.94%), Query Frame = 1

Query: 10  SKENLNMNDMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHEFNQYLTNLSEHHDIPK 69
           S E+++ +D LTP ERR+L Q +K+++QR++KMA KSHRD IHEFN+YL NLSEH+DIPK
Sbjct: 59  STESVSYDDHLTPAERRFLHQTQKLELQRLSKMASKSHRDRIHEFNRYLANLSEHYDIPK 118

Query: 70  IGPG 74
           +GPG
Sbjct: 119 VGPG 122

BLAST of CmoCh09G005070 vs. TrEMBL
Match: A0A0L9UGN2_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g210600 PE=4 SV=1)

HSP 1 Score: 94.4 bits (233), Expect = 6.3e-17
Identity = 41/64 (64.06%), Postives = 55/64 (85.94%), Query Frame = 1

Query: 10 SKENLNMNDMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHEFNQYLTNLSEHHDIPK 69
          S E+++ +D LTP ERR+L Q +K+++QR++KMA KSHRD IHEFN+YL NLSEH+DIPK
Sbjct: 14 STESVSYDDHLTPAERRFLHQTQKLELQRLSKMASKSHRDRIHEFNRYLANLSEHYDIPK 73

Query: 70 IGPG 74
          +GPG
Sbjct: 74 VGPG 77

BLAST of CmoCh09G005070 vs. TrEMBL
Match: A0A059CQQ3_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02104 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.4e-16
Identity = 41/57 (71.93%), Postives = 50/57 (87.72%), Query Frame = 1

Query: 17  NDMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHEFNQYLTNLSEHHDIPKIGPG 74
           +D LTP ERR+LQQ EKI+++R+AKMA KSHRD + EFNQYL NLSEH+DIPK+GPG
Sbjct: 88  DDHLTPAERRFLQQREKIELERLAKMASKSHRDRVQEFNQYLANLSEHYDIPKVGPG 144

BLAST of CmoCh09G005070 vs. TAIR10
Match: AT1G16810.1 (AT1G16810.1 unknown protein)

HSP 1 Score: 86.7 bits (213), Expect = 6.7e-18
Identity = 37/63 (58.73%), Postives = 53/63 (84.13%), Query Frame = 1

Query: 11  KENLNMNDMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHEFNQYLTNLSEHHDIPKI 70
           ++ L+ +D LTP ERRY++Q +++DVQ++AK A KSHR+ I +FNQYL N+SEH+DIPK+
Sbjct: 82  QQQLDDDDHLTPAERRYIEQKQRLDVQKLAKEANKSHRNRIEDFNQYLANMSEHYDIPKV 141

Query: 71  GPG 74
           GPG
Sbjct: 142 GPG 144

BLAST of CmoCh09G005070 vs. NCBI nr
Match: gi|659132680|ref|XP_008466328.1| (PREDICTED: protein FAM32A-like [Cucumis melo])

HSP 1 Score: 108.6 bits (270), Expect = 4.6e-21
Identity = 54/80 (67.50%), Postives = 59/80 (73.75%), Query Frame = 1

Query: 4   TSLVDCSKENLN----------MNDMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHE 63
           TSLVDCSKE +             DMLT  ERRYLQQWEKID+QR++KMA KSHRD I E
Sbjct: 63  TSLVDCSKEKVRDTHGGGGKGLYEDMLTAAERRYLQQWEKIDLQRMSKMASKSHRDRIQE 122

Query: 64  FNQYLTNLSEHHDIPKIGPG 74
           FNQ L NLSEHHDIPK+GPG
Sbjct: 123 FNQRLANLSEHHDIPKVGPG 142

BLAST of CmoCh09G005070 vs. NCBI nr
Match: gi|449437356|ref|XP_004136458.1| (PREDICTED: protein FAM32A-like [Cucumis sativus])

HSP 1 Score: 105.9 bits (263), Expect = 3.0e-20
Identity = 53/77 (68.83%), Postives = 59/77 (76.62%), Query Frame = 1

Query: 4   TSLVDCSKENLN-------MNDMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHEFNQ 63
           TSLVDCSKE           +DMLT  ERRYL+QWEKI++QR+AKMA KSHRD I EFNQ
Sbjct: 56  TSLVDCSKETDGGGSGKGLYDDMLTAAERRYLRQWEKINLQRMAKMASKSHRDRIQEFNQ 115

Query: 64  YLTNLSEHHDIPKIGPG 74
            L NLSEHHDIPK+GPG
Sbjct: 116 CLANLSEHHDIPKVGPG 132

BLAST of CmoCh09G005070 vs. NCBI nr
Match: gi|224082250|ref|XP_002306617.1| (hypothetical protein POPTR_0005s15980g [Populus trichocarpa])

HSP 1 Score: 101.3 bits (251), Expect = 7.4e-19
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 1

Query: 1   MDATSLVDCSKENLNMNDMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHEFNQYLTN 60
           M+ T   D   +    +D LTP E+RYLQQWEKID QR+ KMA KSHRD I EFNQYL N
Sbjct: 67  MNETDKCDEQGQTAKYDDHLTPAEKRYLQQWEKIDTQRMVKMASKSHRDRIQEFNQYLAN 126

Query: 61  LSEHHDIPKIGPG 74
           LSEH+DIPK+GPG
Sbjct: 127 LSEHYDIPKVGPG 139

BLAST of CmoCh09G005070 vs. NCBI nr
Match: gi|802623874|ref|XP_012076315.1| (PREDICTED: protein FAM32A-like [Jatropha curcas])

HSP 1 Score: 100.9 bits (250), Expect = 9.7e-19
Identity = 45/57 (78.95%), Postives = 50/57 (87.72%), Query Frame = 1

Query: 17  NDMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHEFNQYLTNLSEHHDIPKIGPG 74
           +D LTP ERRYLQQWEKID+QR+ KMA KSHRD I EFNQYL NLSEH+DIPK+GPG
Sbjct: 69  DDHLTPAERRYLQQWEKIDLQRLTKMASKSHRDRIQEFNQYLANLSEHYDIPKVGPG 125

BLAST of CmoCh09G005070 vs. NCBI nr
Match: gi|743914986|ref|XP_011001435.1| (PREDICTED: protein FAM32A-like [Populus euphratica])

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-18
Identity = 47/73 (64.38%), Postives = 54/73 (73.97%), Query Frame = 1

Query: 1   MDATSLVDCSKENLNMNDMLTPGERRYLQQWEKIDVQRIAKMAIKSHRDHIHEFNQYLTN 60
           M+ T   D   +    +D LTP E+RYLQQWEKID QR+ KMA KSHRD I EFNQYL N
Sbjct: 60  MNETDKDDEQGQTAKYDDHLTPAEKRYLQQWEKIDTQRMVKMASKSHRDRIQEFNQYLAN 119

Query: 61  LSEHHDIPKIGPG 74
           LSEH+DIPK+GPG
Sbjct: 120 LSEHYDIPKVGPG 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
FA32A_BOVIN7.2e-0639.62Protein FAM32A OS=Bos taurus GN=FAM32A PE=3 SV=1[more]
FA32A_HUMAN7.2e-0639.62Protein FAM32A OS=Homo sapiens GN=FAM32A PE=1 SV=2[more]
FA32A_MOUSE7.2e-0639.62Protein FAM32A OS=Mus musculus GN=Fam32a PE=2 SV=1[more]
FA32A_PONAB7.2e-0639.62Protein FAM32A OS=Pongo abelii GN=FAM32A PE=3 SV=1[more]
FA32A_RAT7.2e-0639.62Protein FAM32A OS=Rattus norvegicus GN=Fam32a PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LDT5_CUCSA2.1e-2068.83Uncharacterized protein OS=Cucumis sativus GN=Csa_3G881680 PE=4 SV=1[more]
B9H7C0_POPTR5.2e-1964.38Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15980g PE=4 SV=1[more]
A0A0S3RC90_PHAAN6.3e-1764.06Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.02G089300 PE=... [more]
A0A0L9UGN2_PHAAN6.3e-1764.06Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan04g210600 PE=4 SV=1[more]
A0A059CQQ3_EUCGR2.4e-1671.93Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_C02104 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G16810.16.7e-1858.73 unknown protein[more]
Match NameE-valueIdentityDescription
gi|659132680|ref|XP_008466328.1|4.6e-2167.50PREDICTED: protein FAM32A-like [Cucumis melo][more]
gi|449437356|ref|XP_004136458.1|3.0e-2068.83PREDICTED: protein FAM32A-like [Cucumis sativus][more]
gi|224082250|ref|XP_002306617.1|7.4e-1964.38hypothetical protein POPTR_0005s15980g [Populus trichocarpa][more]
gi|802623874|ref|XP_012076315.1|9.7e-1978.95PREDICTED: protein FAM32A-like [Jatropha curcas][more]
gi|743914986|ref|XP_011001435.1|1.3e-1864.38PREDICTED: protein FAM32A-like [Populus euphratica][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013865DUF1754_euk
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016628 oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh09G005070.1CmoCh09G005070.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013865Protein of unknown function DUF1754, eukaryoticPANTHERPTHR13282UNCHARACTERIZEDcoord: 10..73
score: 8.5
NoneNo IPR availablePANTHERPTHR13282:SF6PROTEIN FAM32Acoord: 10..73
score: 8.5

The following gene(s) are paralogous to this gene:

None