CmoCh09G004140 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.CTCTCTCTCTCCTTCCTCAGTTCTCTACTCCATCCGTCTTTTACGCTATTGTCTCGTCGACAATGCTAATTCACTCCGTTTCCTTGCGATTCATTGCTTCTGCAGTAGAGAAAGATCGACTCCTCTCTGAAACTGGCGTCTGGCTCGAGCAAGAGCCGACGGCATTGTGTGGATGCTATATTCCGATATTTCTTCCAACGGAGCTGGCCTAGGGTTAAATCTCTAAGGTATTTGATTCTGTTGCTTGCGTGATCGCAGGAAGTGATATTTGCTGCTTACGTTTAGGTATAGTGGACTTTTGAGTCTGTGTTTCGAGCATCGTAGCGTGAGAACTTTTTTCTTTTGGCGAGTTCAGTGTGTGTAGCGTGTATGTGGACTGATACTGGTTAGTGGCTTAGCTTTTACTTCAGATTTTGTCTCTATTCTTGTTTACCAGGCCGTACGTATGTAAAAATGTTGATTAACCTTTATCCACGAGCAACCTTGTAAATCCGCAGATTGTTTGATAGACGCTTCTGGTCAGTCTGCCTGTTTTACTTGGAATACTGAAGTATGCCTGTCTGATAGACGCTTTGTGATACGCTAGACGCTTTGTGATACGCTTCTGCTCAGTCTGCCTGTTTTACTTGGAATACTTAAGTATGCCTGTCTGATAGATGCTTTGTGATACGCTTCTGTTTAGTCTGATAGTCGCTTTGTGATACGCTTCTGTTTAGTCTGCCTGTTTTACGTAGAAAATTTATCAGGCTTTTTGTGATACTACTTTTTGATAGGCTCTTTGTGATACGCCTCTATTCCGTCTGCCTGTTTTACGTAGAAATTCAGCAGGCTATGTGACACTACTTTTTGAGAAACTTTAGTATTTGTATCTGTTTCTTAAGTATGTCTTTATTTGTTATAGACCTAGAAACTAATGGGAGCATCAGGCGCAAAGGACGATATGGAGTGGAATAGTGAAGCGGAAGACTTATCACCTGAAACAGGTATGGATACAGATGATGATGATCATTATTATTCTGAGCCAGTCAACATACAGATCTGGGGGAAACGTTTCTAAAAGATTTTTGTAAGAAGACAGCAATGATATTTTTCAATCAGACGGCCTTATCAGTCACCAAATCAACTCGTACAATGACTTCATAAAAAGTGGTCTTCAGAAGGCCTTTGATTGTATGCTTCAGTGAGTATAACATGCTTCCTAGGCATGCTCGACTTCAGAATATGACTTGTTCATCAAGGATGAAAAAGAATATCAGTGTAGAGGTGCTTAATTTACTGTGTAATTTTTACTGTCTTCGTGTCTTTTCTTATCCTTCATACCTAATAAATTGCTAATATTTGTTTGATAACCTGTGGACCCTGAGTTTGTTGAATAAATACCTAATTAGTTATTGGATACTTGTAATGTACTAGGTATATACTCGAAGGTTAGTTACAAGCGACAAAACTGGAAAAGATCAATATGTCGACGAGGATCTTATAAATCAAGATAACAGGGATGTCTTTATAGGCAGGCTACCTGTGATGGTGAATTCTGACCTTTGCTGGATGAAGGATGAGCAGAAACGTGACTCTGAATTTGATCATGGAGGTTATTTTTTAATCAAAGGCGCAGAAAAAGTGAGTACACTTCCCTCCCTCATTTGGCCCCTTTATACTTTATAGTTATGTATTATCTGTAAATAAATTCACTGTTTTCTTAAATTCTACTGTCACCAAACAATCATTTCAAAACTTTTAATGCATTGTTTGTTTGAAGAGTTTTTTATTACCTTGAACAAGCTGACATAAATATGTATCCAGGTGTTCACATTATCTAATAGAGATCATCCTGGTTCATGGTTAATTGGCTGCCTTTTTAAATTTGCATACACTAAAAATATAAATAAAAAGCCTGTGGCAAAGTATTGAGTTGTGTTCATATTTTTTGAACTTTATGGTATTGAATTATGTATTGGTTTTATTTAATTATTGTTTTAACACAACATTAGCATGCTTATTTTGAAAATCATGAGTATGGTATTTCTTAGAAAATAGTTGCCTTGGAAAAGAGAGCTATTAGGCTTAATTATTTGATCGACGTTCAGGCATGTGATCTGCCTCCTGATGGGACATAAAATTTAGTCAAGAAATTTTAGTTCTACAAAATTTTAGTTCACTACTAACTATATTTTGTAAAAATGATTAATTGATACCATCCTTTTCTCTGTATTTCAATTTTGAATAGATATTTATTTCTCTTTCTGCATGCATATTAATCCAAGTGGTTAACTTTTGTTCCTTTTTCACCACTTTCTTTTCATGTTCATTTCAGATATTTATTGTTCAAGAGCAAATTTGTTTGAGAAGACTCTTGGTTTCTAATATTCAAGGTTGGACTGGCATACAGATCAGAAGTTAA CTCTCTCTCTCCTTCCTCAGTTCTCTACTCCATCCGTCTTTTACGCTATTGTCTCGTCGACAATGCTAATTCACTCCGTTTCCTTGCGATTCATTGCTTCTGCAGTAGAGAAAGATCGACTCCTCTCTGAAACTGGCGTCTGGCTCGAGCAAGAGCCGACGGCATTGTGTGGATGCTATATTCCGATATTTCTTCCAACGGAGCTGGCCTAGGGTTAAATCTCTAAGACCTAGAAACTAATGGGAGCATCAGGCGCAAAGGACGATATGGAGTGGAATAGTGAAGCGGAAGACTTATCACCTGAAACAGGTATGGATACAGATGATGATGATCATTATTATTCTGAGCCAGTCAACATACAGATCTGGGGGAAACGTTTCTAAAAGATTTTTGTAAGAAGACAGCAATGATATTTTTCAATCAGACGGCCTTATCAGTCACCAAATCAACTCGTACAATGACTTCATAAAAAGTGGTCTTCAGAAGGCCTTTGATTGTATGCTTCAGTGAGTATAACATGCTTCCTAGGCATGCTCGACTTCAGAATATGACTTGTTCATCAAGGATGAAAAAGAATATCAGTGTAGAGGTATATACTCGAAGGTTAGTTACAAGCGACAAAACTGGAAAAGATCAATATGTCGACGAGGATCTTATAAATCAAGATAACAGGGATGTCTTTATAGGCAGGCTACCTGTGATGGTGAATTCTGACCTTTGCTGGATGAAGGATGAGCAGAAACGTGACTCTGAATTTGATCATGGAGGTTATTTTTTAATCAAAGGCGCAGAAAAAATATTTATTGTTCAAGAGCAAATTTGTTTGAGAAGACTCTTGGTTTCTAATATTCAAGGTTGGACTGGCATACAGATCAGAAGTTAA ATGCTTCCTAGGCATGCTCGACTTCAGAATATGACTTGTTCATCAAGGATGAAAAAGAATATCAGTGTAGAGGTATATACTCGAAGGTTAGTTACAAGCGACAAAACTGGAAAAGATCAATATGTCGACGAGGATCTTATAAATCAAGATAACAGGGATGTCTTTATAGGCAGGCTACCTGTGATGGTGAATTCTGACCTTTGCTGGATGAAGGATGAGCAGAAACGTGACTCTGAATTTGATCATGGAGGTTATTTTTTAATCAAAGGCGCAGAAAAAATATTTATTGTTCAAGAGCAAATTTGTTTGAGAAGACTCTTGGTTTCTAATATTCAAGGTTGGACTGGCATACAGATCAGAAGTTAA
BLAST of CmoCh09G004140 vs. Swiss-Prot
Match: NRPD2_ARATH (DNA-directed RNA polymerases IV and V subunit 2 OS=Arabidopsis thaliana GN=NRPD2 PE=1 SV=1) HSP 1 Score: 120.2 bits (300), Expect = 1.6e-26 Identity = 62/121 (51.24%), Postives = 84/121 (69.42%), Query Frame = 1
BLAST of CmoCh09G004140 vs. Swiss-Prot
Match: RPD2B_ARATH (DNA-directed RNA polymerase D subunit 2b OS=Arabidopsis thaliana GN=NRPD2b PE=2 SV=1) HSP 1 Score: 89.0 bits (219), Expect = 3.9e-17 Identity = 41/86 (47.67%), Postives = 61/86 (70.93%), Query Frame = 1
BLAST of CmoCh09G004140 vs. Swiss-Prot
Match: RPB2_ASHGO (DNA-directed RNA polymerase II subunit RPB2 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=RPB2 PE=3 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 2.1e-10 Identity = 38/109 (34.86%), Postives = 60/109 (55.05%), Query Frame = 1
BLAST of CmoCh09G004140 vs. Swiss-Prot
Match: RPB2_CANGA (DNA-directed RNA polymerase II subunit RPB2 OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=RPB2 PE=3 SV=1) HSP 1 Score: 65.9 bits (159), Expect = 3.6e-10 Identity = 36/106 (33.96%), Postives = 57/106 (53.77%), Query Frame = 1
BLAST of CmoCh09G004140 vs. Swiss-Prot
Match: RPB2_YEAST (DNA-directed RNA polymerase II subunit RPB2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RPB2 PE=1 SV=2) HSP 1 Score: 64.7 bits (156), Expect = 8.0e-10 Identity = 35/106 (33.02%), Postives = 58/106 (54.72%), Query Frame = 1
BLAST of CmoCh09G004140 vs. TrEMBL
Match: A0A0A0L319_CUCSA (DNA-directed RNA polymerase subunit beta OS=Cucumis sativus GN=Csa_4G651950 PE=3 SV=1) HSP 1 Score: 192.2 bits (487), Expect = 3.7e-46 Identity = 95/119 (79.83%), Postives = 105/119 (88.24%), Query Frame = 1
BLAST of CmoCh09G004140 vs. TrEMBL
Match: B9RNV9_RICCO (DNA-directed RNA polymerase subunit beta OS=Ricinus communis GN=RCOM_0920920 PE=3 SV=1) HSP 1 Score: 184.9 bits (468), Expect = 5.9e-44 Identity = 87/117 (74.36%), Postives = 102/117 (87.18%), Query Frame = 1
BLAST of CmoCh09G004140 vs. TrEMBL
Match: A0A067KMJ5_JATCU (DNA-directed RNA polymerase subunit beta OS=Jatropha curcas GN=JCGZ_07086 PE=3 SV=1) HSP 1 Score: 178.3 bits (451), Expect = 5.5e-42 Identity = 81/117 (69.23%), Postives = 101/117 (86.32%), Query Frame = 1
BLAST of CmoCh09G004140 vs. TrEMBL
Match: A0A061GIG6_THECC (DNA-directed RNA polymerase subunit beta OS=Theobroma cacao GN=TCM_036908 PE=3 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 5.7e-39 Identity = 77/117 (65.81%), Postives = 97/117 (82.91%), Query Frame = 1
BLAST of CmoCh09G004140 vs. TrEMBL
Match: A0A061GIU5_THECC (DNA-directed RNA polymerase subunit beta OS=Theobroma cacao GN=TCM_036908 PE=3 SV=1) HSP 1 Score: 168.3 bits (425), Expect = 5.7e-39 Identity = 77/117 (65.81%), Postives = 97/117 (82.91%), Query Frame = 1
BLAST of CmoCh09G004140 vs. TAIR10
Match: AT3G23780.1 (AT3G23780.1 nuclear RNA polymerase D2A) HSP 1 Score: 120.2 bits (300), Expect = 9.0e-28 Identity = 62/121 (51.24%), Postives = 84/121 (69.42%), Query Frame = 1
BLAST of CmoCh09G004140 vs. TAIR10
Match: AT3G18090.1 (AT3G18090.1 nuclear RNA polymerase D2B) HSP 1 Score: 109.0 bits (271), Expect = 2.1e-24 Identity = 55/116 (47.41%), Postives = 81/116 (69.83%), Query Frame = 1
BLAST of CmoCh09G004140 vs. TAIR10
Match: AT4G21710.1 (AT4G21710.1 DNA-directed RNA polymerase family protein) HSP 1 Score: 60.8 bits (146), Expect = 6.5e-10 Identity = 36/114 (31.58%), Postives = 63/114 (55.26%), Query Frame = 1
BLAST of CmoCh09G004140 vs. TAIR10
Match: AT5G45140.1 (AT5G45140.1 nuclear RNA polymerase C2) HSP 1 Score: 55.1 bits (131), Expect = 3.6e-08 Identity = 25/64 (39.06%), Postives = 42/64 (65.62%), Query Frame = 1
BLAST of CmoCh09G004140 vs. NCBI nr
Match: gi|659104213|ref|XP_008452849.1| (PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Cucumis melo]) HSP 1 Score: 194.9 bits (494), Expect = 8.1e-47 Identity = 96/119 (80.67%), Postives = 106/119 (89.08%), Query Frame = 1
BLAST of CmoCh09G004140 vs. NCBI nr
Match: gi|449455519|ref|XP_004145500.1| (PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 [Cucumis sativus]) HSP 1 Score: 192.2 bits (487), Expect = 5.3e-46 Identity = 95/119 (79.83%), Postives = 105/119 (88.24%), Query Frame = 1
BLAST of CmoCh09G004140 vs. NCBI nr
Match: gi|255548744|ref|XP_002515428.1| (PREDICTED: DNA-directed RNA polymerases IV and V subunit 2 [Ricinus communis]) HSP 1 Score: 184.9 bits (468), Expect = 8.4e-44 Identity = 87/117 (74.36%), Postives = 102/117 (87.18%), Query Frame = 1
BLAST of CmoCh09G004140 vs. NCBI nr
Match: gi|802626339|ref|XP_012076429.1| (PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]) HSP 1 Score: 178.3 bits (451), Expect = 7.9e-42 Identity = 81/117 (69.23%), Postives = 101/117 (86.32%), Query Frame = 1
BLAST of CmoCh09G004140 vs. NCBI nr
Match: gi|590571885|ref|XP_007011717.1| (DNA-directed RNA polymerase isoform 1 [Theobroma cacao]) HSP 1 Score: 168.3 bits (425), Expect = 8.2e-39 Identity = 77/117 (65.81%), Postives = 97/117 (82.91%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |