CmoCh07G012340 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G012340
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr07 : 6744224 .. 6744592 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTCTTCCAACTACTTCATCATACCTTTCATGGCTACTTTAGTGTTTTCGGCCATCGACACTGGCCGAGCAGCTCGTCATCTCCTGCAAATCGCTTCACCGAGCGTGCCAGGGTTGCCCTCATTGCCTCCTCTCCCGTCGTTGCCAAACCCGACAACAGGGTCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACGTTGCCAACTACTCAACCATCCCTCCCTAAGTTACCACCATTTCCAACCTTCCCTAGCAACATCCCGACTGGAATGGCGCTGCCTCCGCTCCCGACAACTTTGCTTCCAAACCTACCCTCGATCCCTTCCCTCACTCCACCGCCGACCACCACCTCTTCACCTTGA

mRNA sequence

ATGGCCTCTTCCAACTACTTCATCATACCTTTCATGGCTACTTTAGTGTTTTCGGCCATCGACACTGGCCGAGCAGCTCGTCATCTCCTGCAAATCGCTTCACCGAGCGTGCCAGGGTTGCCCTCATTGCCTCCTCTCCCGTCGTTGCCAAACCCGACAACAGGGTCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACGTTGCCAACTACTCAACCATCCCTCCCTAAGTTACCACCATTTCCAACCTTCCCTAGCAACATCCCGACTGGAATGGCGCTGCCTCCGCTCCCGACAACTTTGCTTCCAAACCTACCCTCGATCCCTTCCCTCACTCCACCGCCGACCACCACCTCTTCACCTTGA

Coding sequence (CDS)

ATGGCCTCTTCCAACTACTTCATCATACCTTTCATGGCTACTTTAGTGTTTTCGGCCATCGACACTGGCCGAGCAGCTCGTCATCTCCTGCAAATCGCTTCACCGAGCGTGCCAGGGTTGCCCTCATTGCCTCCTCTCCCGTCGTTGCCAAACCCGACAACAGGGTCAGGAATCCCTTCTATCCCAAGCCTCCCACAACCAACGTTGCCAACTACTCAACCATCCCTCCCTAAGTTACCACCATTTCCAACCTTCCCTAGCAACATCCCGACTGGAATGGCGCTGCCTCCGCTCCCGACAACTTTGCTTCCAAACCTACCCTCGATCCCTTCCCTCACTCCACCGCCGACCACCACCTCTTCACCTTGA
Homology
[Close]
BLAST of CmoCh07G012340 vs. TrEMBL
Match: A0A0A0KWI7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1)

HSP 1 Score: 127.9 bits (320), Expect = 8.6e-27
Identity = 83/129 (64.34%), Postives = 94/129 (72.87%), Query Frame = 1 

Query: 1   MASSNYFI-IPFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPL---PSLPNPTTGS 60
           M S  YF+ + FMATLVFSAID+ RAAR LLQ A P++PGLPSLP L   P LP    G 
Sbjct: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60

Query: 61  GIPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIP-TGMALPPLPT--TLLPNLPSIPSLT 120
           G+PSIP+LPQPT PT QPSLPKLPP P+ P NIP TG+  PPLPT  ++    PSIP LT
Sbjct: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120

Query: 121 PPPTTTSSP 123
           PPP TTSSP
Sbjct: 121 PPPATTSSP 129

[Close]
BLAST of CmoCh07G012340 vs. TrEMBL
Match: A0A0A0KZV3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 9.5e-18
Identity = 67/133 (50.38%), Postives = 80/133 (60.15%), Query Frame = 1 

Query: 1   MASSNYFIIPFMATLVFSAIDTGRAARHLLQ--IASPSVPGLPSLPPLPSLPNPTTGSGI 60
           MAS N FI+ FM T VFS++D  R +RHLLQ  +  P +P LP    LP LP   TG  I
Sbjct: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMPTGPSI 60

Query: 61  PSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLP----------- 120
           PSIP+ PQP+LP        LPP P+ P NIPT + LPPLPTT LPNLP           
Sbjct: 61  PSIPNFPQPSLPKLT-----LPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLPS 120

[Close]
BLAST of CmoCh07G012340 vs. TrEMBL
Match: A0A061E279_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_007394 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.3e-14
Identity = 67/131 (51.15%), Postives = 82/131 (62.60%), Query Frame = 1 

Query: 1   MASSNYFIIPFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPSLPNPTTGSGIPS 60
           MAS N FI+ F   L FS+I+ G+AARHLLQ        LP LPP+P+LP  T    +PS
Sbjct: 1   MASFNCFILAFFMALSFSSINVGQAARHLLQ--------LPPLPPMPTLPGATL-PPLPS 60

Query: 61  IPSLPQ---PTLPTTQPSLPK---LPPFPTFPSNIPTGMALPPLPT-----TLLPNLPSI 120
           IP+LPQ   PTLPTT PSLPK   LPP PT P+     +ALPPLP+     T+   +PS+
Sbjct: 61  IPNLPQPTIPTLPTTLPSLPKPGTLPPLPTIPT--APKVALPPLPSLPLVPTIPTTIPSV 120

[Close]
BLAST of CmoCh07G012340 vs. TrEMBL
Match: A0A0A0L1Y3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G374890 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.3e-14
Identity = 65/136 (47.79%), Postives = 77/136 (56.62%), Query Frame = 1 

Query: 1   MASSNYFIIPFMATLVFSAIDTGRAARHLLQIASPSVPGLPS----LPPLPSLPNPTTGS 60
           MA+S + II F ATL  S+I+ G AARHL Q   P VP LP+    +PPLP LPNPT   
Sbjct: 1   MATSRFLIIAFTATLALSSINFGHAARHLSQTTPPLVPNLPAIPTLIPPLPGLPNPT--- 60

Query: 61  GIPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLP----------NL 120
               +P LPQPTLP         PP       +P G+ALPPLPT  LP          + 
Sbjct: 61  ----LPKLPQPTLPKI-----NFPP-------LPIGLALPPLPTMTLPKFPPIPTIPISF 117

Query: 121 PSIPSLTPPPTTTSSP 123
           PSIP L+PPP T+SSP
Sbjct: 121 PSIPFLSPPPATSSSP 117

[Close]
BLAST of CmoCh07G012340 vs. TrEMBL
Match: A0A058ZV11_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01561 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 1.9e-13
Identity = 67/141 (47.52%), Postives = 88/141 (62.41%), Query Frame = 1 

Query: 1   MASSNYFIIPFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPLPSLPNPTTGSGIPS 60
           MAS +   + F+A L+FS ID    ARHLLQ   PS+P   SLP +P+LPNPT+   +P+
Sbjct: 1   MASFSKSFVLFIA-LIFSIIDMSFGARHLLQTTMPSIP---SLPTIPTLPNPTSLPPLPA 60

Query: 61  IPSLPQ------------------PTLPTTQPSLPK--LPPFPTFPSNIPTGMALPPLPT 120
           +P+LP+                  PTLPTTQP+LPK  LPP P+ P+ +PT   LPP+P+
Sbjct: 61  MPTLPKVAVPPMPAIPTTLPQPTLPTLPTTQPALPKTTLPPLPSLPT-MPT--TLPPMPS 120

[Close]
BLAST of CmoCh07G012340 vs. NCBI nr
Match: gi|778697598|ref|XP_011654355.1| (PREDICTED: RNA-binding protein 12 [Cucumis sativus])

HSP 1 Score: 127.9 bits (320), Expect = 1.2e-26
Identity = 83/129 (64.34%), Postives = 94/129 (72.87%), Query Frame = 1 

Query: 1   MASSNYFI-IPFMATLVFSAIDTGRAARHLLQIASPSVPGLPSLPPL---PSLPNPTTGS 60
           M S  YF+ + FMATLVFSAID+ RAAR LLQ A P++PGLPSLP L   P LP    G 
Sbjct: 1   MVSPKYFMTLTFMATLVFSAIDSSRAARRLLQTAPPNMPGLPSLPKLMGMPPLPPLPMGP 60

Query: 61  GIPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIP-TGMALPPLPT--TLLPNLPSIPSLT 120
           G+PSIP+LPQPT PT QPSLPKLPP P+ P NIP TG+  PPLPT  ++    PSIP LT
Sbjct: 61  GMPSIPNLPQPTFPTIQPSLPKLPPLPSLPVNIPATGVVFPPLPTLPSIPTTFPSIPFLT 120

Query: 121 PPPTTTSSP 123
           PPP TTSSP
Sbjct: 121 PPPATTSSP 129

[Close]
BLAST of CmoCh07G012340 vs. NCBI nr
Match: gi|659108948|ref|XP_008454468.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X1 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.8e-18
Identity = 71/115 (61.74%), Postives = 77/115 (66.96%), Query Frame = 1 

Query: 19  AIDTGRAARHLLQIASPSVPGLPSLPP---LPSLPNPTTGSGIPSIPSLPQPTLPTTQPS 78
           +IDT RAAR LLQ A P++PGLPSLP    LP LP    G G  SIP+ PQPT PT QPS
Sbjct: 61  SIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGPGTSSIPNFPQPTFPTIQPS 120

Query: 79  LPKLPPFPTFPSNIP-TGMALPPLPTTLLPNLPSIPS-------LTPPPTTTSSP 123
           LPKLPP P+ P NIP TG  LPPL T  LP LPSIP+       LTPPP T SSP
Sbjct: 121 LPKLPPLPSLPLNIPTTGAVLPPL-TNSLPTLPSIPTTFPSIPFLTPPPATHSSP 174

[Close]
BLAST of CmoCh07G012340 vs. NCBI nr
Match: gi|659108950|ref|XP_008454469.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X2 [Cucumis melo])

HSP 1 Score: 100.1 bits (248), Expect = 2.8e-18
Identity = 71/115 (61.74%), Postives = 77/115 (66.96%), Query Frame = 1 

Query: 19  AIDTGRAARHLLQIASPSVPGLPSLPP---LPSLPNPTTGSGIPSIPSLPQPTLPTTQPS 78
           +IDT RAAR LLQ A P++PGLPSLP    LP LP    G G  SIP+ PQPT PT QPS
Sbjct: 31  SIDTSRAARCLLQTAPPNMPGLPSLPKPIGLPPLPPLPMGPGTSSIPNFPQPTFPTIQPS 90

Query: 79  LPKLPPFPTFPSNIP-TGMALPPLPTTLLPNLPSIPS-------LTPPPTTTSSP 123
           LPKLPP P+ P NIP TG  LPPL T  LP LPSIP+       LTPPP T SSP
Sbjct: 91  LPKLPPLPSLPLNIPTTGAVLPPL-TNSLPTLPSIPTTFPSIPFLTPPPATHSSP 144

[Close]
BLAST of CmoCh07G012340 vs. NCBI nr
Match: gi|700198739|gb|KGN53897.1| (hypothetical protein Csa_4G182280 [Cucumis sativus])

HSP 1 Score: 97.8 bits (242), Expect = 1.4e-17
Identity = 67/133 (50.38%), Postives = 80/133 (60.15%), Query Frame = 1 

Query: 1   MASSNYFIIPFMATLVFSAIDTGRAARHLLQ--IASPSVPGLPSLPPLPSLPNPTTGSGI 60
           MAS N FI+ FM T VFS++D  R +RHLLQ  +  P +P LP    LP LP   TG  I
Sbjct: 1   MASFNCFILTFMVTCVFSSVDAARTSRHLLQTILNLPPMPSLPKPSALPPLPPMPTGPSI 60

Query: 61  PSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLP----------- 120
           PSIP+ PQP+LP        LPP P+ P NIPT + LPPLPTT LPNLP           
Sbjct: 61  PSIPNFPQPSLPKLT-----LPPLPSLPMNIPTKVPLPPLPTTSLPNLPFLSSISTTLPS 120

[Close]
BLAST of CmoCh07G012340 vs. NCBI nr
Match: gi|659125859|ref|XP_008462893.1| (PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo])

HSP 1 Score: 94.7 bits (234), Expect = 1.2e-16
Identity = 68/136 (50.00%), Postives = 83/136 (61.03%), Query Frame = 1 

Query: 1   MASSNYFIIPFMATLVFSAIDTGRAARHLLQIASPSVPGLPS----LPPLPSLPNPTTGS 60
           MASS + II FMATL  S+I+ G+AARHLLQ   P VP LP+    +PP P+LPNPT   
Sbjct: 1   MASSKFLIIAFMATLALSSINFGQAARHLLQTTPPLVPNLPAIPTGIPPFPALPNPT--- 60

Query: 61  GIPSIPSLPQPTLPTTQPSLPKLPPFPTFPSNIPTGMALPPLPTTLLPNLPSIPS----- 120
               +P+LPQPT+P        LPP       +P G+ALPPLPT  LPN PSIP+     
Sbjct: 61  ----LPNLPQPTIPKV-----NLPP-------LPNGLALPPLPTMALPNFPSIPTIPTSF 117

Query: 121 -----LTPPPTTTSSP 123
                L+PPP T+SSP
Sbjct: 121 PSIPFLSPPPATSSSP 117

The following BLAST results are available for this feature:
BLAST of CmoCh07G012340 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh07G012340 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWI7_CUCSA8.6e-2764.34Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182290 PE=4 SV=1[more]
A0A0A0KZV3_CUCSA9.5e-1850.38Uncharacterized protein OS=Cucumis sativus GN=Csa_4G182280 PE=4 SV=1[more]
A0A061E279_THECC8.3e-1451.15Uncharacterized protein OS=Theobroma cacao GN=TCM_007394 PE=4 SV=1[more]
A0A0A0L1Y3_CUCSA8.3e-1447.79Uncharacterized protein OS=Cucumis sativus GN=Csa_4G374890 PE=4 SV=1[more]
A0A058ZV11_EUCGR1.9e-1347.52Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_L01561 PE=4 SV=1[more]
BLAST of CmoCh07G012340 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh07G012340 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778697598|ref|XP_011654355.1|1.2e-2664.34PREDICTED: RNA-binding protein 12 [Cucumis sativus][more]
gi|659108948|ref|XP_008454468.1|2.8e-1861.74PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X1 [Cucumis m... [more]
gi|659108950|ref|XP_008454469.1|2.8e-1861.74PREDICTED: proline-rich receptor-like protein kinase PERK2 isoform X2 [Cucumis m... [more]
gi|700198739|gb|KGN53897.1|1.4e-1750.38hypothetical protein Csa_4G182280 [Cucumis sativus][more]
gi|659125859|ref|XP_008462893.1|1.2e-1650.00PREDICTED: proline-rich receptor-like protein kinase PERK2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G012340.1CmoCh07G012340.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33088FAMILY NOT NAMEDcoord: 1..122
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G012340Melon (DHL92) v3.5.1cmomeB785
CmoCh07G012340Watermelon (Charleston Gray)cmowcgB762
CmoCh07G012340Watermelon (97103) v1cmowmB817
CmoCh07G012340Cucurbita pepo (Zucchini)cmocpeB807
CmoCh07G012340Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G012340Bottle gourd (USVL1VR-Ls)cmolsiB779
CmoCh07G012340Cucumber (Gy14) v2cgybcmoB538
CmoCh07G012340Melon (DHL92) v3.6.1cmomedB888
CmoCh07G012340Silver-seed gourdcarcmoB0395
CmoCh07G012340Silver-seed gourdcarcmoB0864
CmoCh07G012340Cucumber (Chinese Long) v3cmocucB1000
CmoCh07G012340Watermelon (97103) v2cmowmbB860
CmoCh07G012340Wax gourdcmowgoB1064
CmoCh07G012340Cucurbita moschata (Rifu)cmocmoB456
CmoCh07G012340Cucurbita maxima (Rimu)cmacmoB668
CmoCh07G012340Cucurbita maxima (Rimu)cmacmoB875