CmoCh06G006830 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAATGTGGTGGTGCAGCAGGAGGTAGAGATGGCTTCCATAGCTACAGAAGGCAACAACCTAAGCCAACCTCGGGTATTTTCATCTCCAAAATTCCCCTTTTACCCTTCGCTTGCACGTTCTATCTCTACATATATTACGTTTTGGTTTCCATTTGTGACATGCATCAAGATCTCTTCATCTTCATCATTTTTGGTTAGTTTCTATTGATTTAGATTTGCATGTATCAAAAAGCTTCAATTTGCCTTCTCTTTCTAATATCTTAATATTTTCGTACAAAGCTCAACTCGGACTTGAATTTCAATGAAAGAGAGCCATTAGCATGGTACACAGGACCAAAATTGAAACCCTAATTTGAAAACACTGGTCGGTTGATTGAACGTTTGAAAAAAAACTAAGTCACGGTGGATAATTTTTAGACTATTGTGTTGTGTTACATGCCATGGCTCCGTGGAGCCAGAAATTTTTTGTAAATAAATTTAAATTTATAGTTTTTTTTGGTACACGTCTTTAATATAATTTTTTTGTCAGATGTGTGAGTTGGCAGTATTGGTGCGTGGCTAATTAACAAATAAAAAAAGGAAAAAATAATAATAAATAAAGGTTAATATCTATGGTCTTTCTGCCCATACAAATAGTAGAAAACTTCTTGCCCTAATTCAGTCTTTTATTCTCCATAACCAAATAATTAACTTACTTCCTTTTTTTACTCCACTTACTTTTTTCAAGCGTTGGGGCCTGATTGATTATTGGTAGTTAATGTAATGAATATATATTTTAATATTTATTATATGAAAATGAAATAATTATAAAAGATTAAAACATTAAGAATTGAATTAAAACTTTGTAATTATTGAGATTATTTATTTAATTTCGTTTTAATTGGTTCTGTCAATTAAAATCTTAAATTATGCTAAATTGATTTATGAAAATTTAAGCTTTTTAATATTTGTTTGATGAATCTGTATAAAGCATTTGGTTTCAGCTTTGAATGTATTGTTGACCACAAATAAGTCATCCTCTGCCAACAACACTCACAACAGCAACCACCAGCAATCAAATAGTCGAAACGTTGCGGCCAACTCCCCTGTGACTGGCTCTATCCCTGCCTCGATCGCTGCTACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAAGACCAATATATGCCGATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGTGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTAACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAATCGCTACCGCGAGTCGGAGAGTGATCGAATGCGTACGGAACCGATCCTGAGGCGCAATGTAGATTATGGACCACAAGTCGGGATGGTAACACCGTATGGCCAGACATTTCAGATAGGGCACGTCCCAATAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGGTAGTCAACTTTGA ATGGAATGTGGTGGTGCAGCAGGAGGTAGAGATGGCTTCCATAGCTACAGAAGGCAACAACCTAAGCCAACCTCGGCTTTGAATGTATTGTTGACCACAAATAAGTCATCCTCTGCCAACAACACTCACAACAGCAACCACCAGCAATCAAATAGTCGAAACGTTGCGGCCAACTCCCCTGTGACTGGCTCTATCCCTGCCTCGATCGCTGCTACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAAGACCAATATATGCCGATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGTGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTAACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAATCGCTACCGCGAGTCGGAGAGTGATCGAATGCGTACGGAACCGATCCTGAGGCGCAATGTAGATTATGGACCACAAGTCGGGATGGTAACACCGTATGGCCAGACATTTCAGATAGGGCACGTCCCAATAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGGTAGTCAACTTTGA ATGGAATGTGGTGGTGCAGCAGGAGGTAGAGATGGCTTCCATAGCTACAGAAGGCAACAACCTAAGCCAACCTCGGCTTTGAATGTATTGTTGACCACAAATAAGTCATCCTCTGCCAACAACACTCACAACAGCAACCACCAGCAATCAAATAGTCGAAACGTTGCGGCCAACTCCCCTGTGACTGGCTCTATCCCTGCCTCGATCGCTGCTACCAACAATGAGCAGAGCCAACAATGCATTGTGCGGGAGCAAGACCAATATATGCCGATCGCTAATGTGATACGCATCATGCGACGAATCTTACCCTCTCATGCAAAGATATCTGATGATGCAAAGGAAACCATCCAAGAATGCGTGTCTGAGTACATCAGCTTCATTACTGGTGAGGCCAACGAGCGATGCCAAAGGGAGCAGCGTAAGACAGTAACAGCAGAGGATGTCCTTTGGGCCATGGGGAAGCTAGGGTTTGACGATTACATTGAGCCATTAACTGTCTTTCTCAATCGCTACCGCGAGTCGGAGAGTGATCGAATGCGTACGGAACCGATCCTGAGGCGCAATGTAGATTATGGACCACAAGTCGGGATGGTAACACCGTATGGCCAGACATTTCAGATAGGGCACGTCCCAATAGGAATGTTTGATGCAATGGGCGGGTACTACGATGGAGGTGGCAATGGCGGGTCGAGCTCGGGCAATGGTAGTCAACTTTGA
BLAST of CmoCh06G006830 vs. Swiss-Prot
Match: NFYB9_ARATH (Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana GN=NFYB9 PE=1 SV=2) HSP 1 Score: 196.1 bits (497), Expect = 4.5e-49 Identity = 114/193 (59.07%), Postives = 132/193 (68.39%), Query Frame = 1
BLAST of CmoCh06G006830 vs. Swiss-Prot
Match: NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2) HSP 1 Score: 183.7 bits (465), Expect = 2.3e-45 Identity = 99/169 (58.58%), Postives = 115/169 (68.05%), Query Frame = 1
BLAST of CmoCh06G006830 vs. Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 7.0e-34 Identity = 64/99 (64.65%), Postives = 86/99 (86.87%), Query Frame = 1
BLAST of CmoCh06G006830 vs. Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2) HSP 1 Score: 142.5 bits (358), Expect = 5.9e-33 Identity = 62/100 (62.00%), Postives = 84/100 (84.00%), Query Frame = 1
BLAST of CmoCh06G006830 vs. Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1) HSP 1 Score: 142.5 bits (358), Expect = 5.9e-33 Identity = 62/100 (62.00%), Postives = 84/100 (84.00%), Query Frame = 1
BLAST of CmoCh06G006830 vs. TrEMBL
Match: A0A0A0L2U1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G049440 PE=4 SV=1) HSP 1 Score: 312.4 bits (799), Expect = 4.8e-82 Identity = 161/214 (75.23%), Postives = 177/214 (82.71%), Query Frame = 1
BLAST of CmoCh06G006830 vs. TrEMBL
Match: A0A0A0L4W1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G055940 PE=4 SV=1) HSP 1 Score: 248.8 bits (634), Expect = 6.5e-63 Identity = 135/214 (63.08%), Postives = 152/214 (71.03%), Query Frame = 1
BLAST of CmoCh06G006830 vs. TrEMBL
Match: A0A0E3N6S2_GOSBA (Leafy cotyledon 1A OS=Gossypium barbadense GN=LEC1A PE=2 SV=1) HSP 1 Score: 240.0 bits (611), Expect = 3.0e-60 Identity = 129/179 (72.07%), Postives = 148/179 (82.68%), Query Frame = 1
BLAST of CmoCh06G006830 vs. TrEMBL
Match: A0A0B0PGM2_GOSAR (Nuclear transcription factor Y subunit B-9-like protein OS=Gossypium arboreum GN=F383_03265 PE=4 SV=1) HSP 1 Score: 239.6 bits (610), Expect = 4.0e-60 Identity = 138/230 (60.00%), Postives = 168/230 (73.04%), Query Frame = 1
BLAST of CmoCh06G006830 vs. TrEMBL
Match: A0A061FC04_THECC (Ccaat-binding transcription factor subunit A, putative OS=Theobroma cacao GN=TCM_030636 PE=4 SV=1) HSP 1 Score: 237.7 bits (605), Expect = 1.5e-59 Identity = 140/235 (59.57%), Postives = 161/235 (68.51%), Query Frame = 1
BLAST of CmoCh06G006830 vs. TAIR10
Match: AT1G21970.1 (AT1G21970.1 Histone superfamily protein) HSP 1 Score: 196.1 bits (497), Expect = 2.5e-50 Identity = 114/193 (59.07%), Postives = 132/193 (68.39%), Query Frame = 1
BLAST of CmoCh06G006830 vs. TAIR10
Match: AT5G47670.1 (AT5G47670.1 nuclear factor Y, subunit B6) HSP 1 Score: 183.7 bits (465), Expect = 1.3e-46 Identity = 99/169 (58.58%), Postives = 115/169 (68.05%), Query Frame = 1
BLAST of CmoCh06G006830 vs. TAIR10
Match: AT4G14540.1 (AT4G14540.1 nuclear factor Y, subunit B3) HSP 1 Score: 145.6 bits (366), Expect = 3.9e-35 Identity = 64/99 (64.65%), Postives = 86/99 (86.87%), Query Frame = 1
BLAST of CmoCh06G006830 vs. TAIR10
Match: AT2G37060.1 (AT2G37060.1 nuclear factor Y, subunit B8) HSP 1 Score: 140.2 bits (352), Expect = 1.7e-33 Identity = 69/139 (49.64%), Postives = 99/139 (71.22%), Query Frame = 1
BLAST of CmoCh06G006830 vs. TAIR10
Match: AT5G47640.1 (AT5G47640.1 nuclear factor Y, subunit B2) HSP 1 Score: 138.7 bits (348), Expect = 4.8e-33 Identity = 84/186 (45.16%), Postives = 112/186 (60.22%), Query Frame = 1
BLAST of CmoCh06G006830 vs. NCBI nr
Match: gi|659096616|ref|XP_008449191.1| (PREDICTED: nuclear transcription factor Y subunit B-9 [Cucumis melo]) HSP 1 Score: 343.2 bits (879), Expect = 3.6e-91 Identity = 172/210 (81.90%), Postives = 185/210 (88.10%), Query Frame = 1
BLAST of CmoCh06G006830 vs. NCBI nr
Match: gi|700200905|gb|KGN56038.1| (hypothetical protein Csa_3G049440 [Cucumis sativus]) HSP 1 Score: 312.4 bits (799), Expect = 6.9e-82 Identity = 161/214 (75.23%), Postives = 177/214 (82.71%), Query Frame = 1
BLAST of CmoCh06G006830 vs. NCBI nr
Match: gi|700200906|gb|KGN56039.1| (hypothetical protein Csa_3G055940 [Cucumis sativus]) HSP 1 Score: 248.8 bits (634), Expect = 9.4e-63 Identity = 135/214 (63.08%), Postives = 152/214 (71.03%), Query Frame = 1
BLAST of CmoCh06G006830 vs. NCBI nr
Match: gi|805305825|gb|AKB11452.1| (leafy cotyledon 1A [Gossypium barbadense]) HSP 1 Score: 240.0 bits (611), Expect = 4.3e-60 Identity = 129/179 (72.07%), Postives = 148/179 (82.68%), Query Frame = 1
BLAST of CmoCh06G006830 vs. NCBI nr
Match: gi|728844156|gb|KHG23599.1| (Nuclear transcription factor Y subunit B-9 -like protein [Gossypium arboreum]) HSP 1 Score: 239.6 bits (610), Expect = 5.7e-60 Identity = 138/230 (60.00%), Postives = 168/230 (73.04%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: |