CmoCh04G021110 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: CDSexon Hold the cursor over a type above to highlight its positions in the sequence below.ATGCGTGTCAACTTACAAGCACAAGGCATGTGGGATGTCATCGAGTATGGTGATGTTGAGGAGCGTAAGGATAAGATGGCTCTTGCCGCCATCTACCAAACAGTCTCGAAGGACGTTCTTCTCATGTTGACAGAGAAGGACTCGACAAAGGCAGCATGGGAGACGCTGCAAACAATGCATGTAGGTGTGGAACGTGTCAAGGAAGCAAAGGTGTAGACCTTGAAGAGTGAGTTTGAGGCTATCCGCATGAAGGACTGTGAGTCAATAGACGACTTTTGCAAAAAGAGCTTGAAGTCATTGAGAAGAACTAGACATGGACATTAACTAACTTACCGTCAGGATAGAAGCCCATCTATTTGAAGTGGGTGTTTAAGTTGAAGAAGAATAGTGAAGGAAATGTCATCAAACATAAAGCAAGACTCATGGAAAAGGGATACGTGCAACAACAAGGAGTTAATTTTGAGGAGGTTTTCGCGCCTGTTGCTAAACTAGGCACCGTAAGGTTGATTCTTGCTCTCGCAGCTCAACACAAATGGGAGGTCCCTCACTTGGACATCAAAACAACATTCCTAAATGGTGACCTCCAAGAAGAAGTGTATGTTGCCCAACCTGAAGGGTTCGTCATTAAAGCCGAAGAACACAAAGTGTACAAGTTGTCAAAGACCCTGTATGGTCTATAG ATGCGTGTCAACTTACAAGCACAAGGCATGTGGGATGTCATCGAGTATGGTGATGTTGAGGAGCGTAAGGATAAGATGGCTCTTGCCGCCATCTACCAAACAGTCTCGAAGGACGTTCTTCTCATGTTGACAGAGAAGGACTCGACAAAGGCAGCATGGGAGACGCTGCAAACAATGCATTTGAAGAAGAATAGTGAAGGAAATGTCATCAAACATAAAGCAAGACTCATGGAAAAGGGATACGTGCAACAACAAGGAGTTAATTTTGAGGAGGTTTTCGCGCCTGTTGCTAAACTAGGCACCGTAAGGTTGATTCTTGCTCTCGCAGCTCAACACAAATGGGAGGTCCCTCACTTGGACATCAAAACAACATTCCTAAATGGTGACCTCCAAGAAGAAGTGTATGTTGCCCAACCTGAAGGGTTCGTCATTAAAGCCGAAGAACACAAAGTGTACAAGTTGTCAAAGACCCTGTATGGTCTATAG ATGCGTGTCAACTTACAAGCACAAGGCATGTGGGATGTCATCGAGTATGGTGATGTTGAGGAGCGTAAGGATAAGATGGCTCTTGCCGCCATCTACCAAACAGTCTCGAAGGACGTTCTTCTCATGTTGACAGAGAAGGACTCGACAAAGGCAGCATGGGAGACGCTGCAAACAATGCATTTGAAGAAGAATAGTGAAGGAAATGTCATCAAACATAAAGCAAGACTCATGGAAAAGGGATACGTGCAACAACAAGGAGTTAATTTTGAGGAGGTTTTCGCGCCTGTTGCTAAACTAGGCACCGTAAGGTTGATTCTTGCTCTCGCAGCTCAACACAAATGGGAGGTCCCTCACTTGGACATCAAAACAACATTCCTAAATGGTGACCTCCAAGAAGAAGTGTATGTTGCCCAACCTGAAGGGTTCGTCATTAAAGCCGAAGAACACAAAGTGTACAAGTTGTCAAAGACCCTGTATGGTCTATAG
BLAST of CmoCh04G021110 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1) HSP 1 Score: 115.5 bits (288), Expect = 5.2e-25 Identity = 57/142 (40.14%), Postives = 94/142 (66.20%), Query Frame = 1
BLAST of CmoCh04G021110 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3) HSP 1 Score: 96.3 bits (238), Expect = 3.3e-19 Identity = 47/119 (39.50%), Postives = 76/119 (63.87%), Query Frame = 1
BLAST of CmoCh04G021110 vs. TrEMBL
Match: Q0J8A6_ORYSJ (Os08g0125300 protein OS=Oryza sativa subsp. japonica GN=Os08g0125300 PE=2 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 5.1e-35 Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 1
BLAST of CmoCh04G021110 vs. TrEMBL
Match: B8BDZ6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30754 PE=4 SV=1) HSP 1 Score: 155.6 bits (392), Expect = 5.1e-35 Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 1
BLAST of CmoCh04G021110 vs. TrEMBL
Match: Q84SW8_ORYSJ (Gag-pol polyprotein OS=Oryza sativa subsp. japonica GN=LOC_Os03g47410 PE=4 SV=1) HSP 1 Score: 151.8 bits (382), Expect = 7.3e-34 Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 1
BLAST of CmoCh04G021110 vs. TrEMBL
Match: W5I9Q0_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33 Identity = 69/101 (68.32%), Postives = 87/101 (86.14%), Query Frame = 1
BLAST of CmoCh04G021110 vs. TrEMBL
Match: W5ER45_WHEAT (Uncharacterized protein OS=Triticum aestivum PE=4 SV=1) HSP 1 Score: 150.6 bits (379), Expect = 1.6e-33 Identity = 69/101 (68.32%), Postives = 87/101 (86.14%), Query Frame = 1
BLAST of CmoCh04G021110 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8) HSP 1 Score: 96.7 bits (239), Expect = 1.4e-20 Identity = 47/105 (44.76%), Postives = 72/105 (68.57%), Query Frame = 1
BLAST of CmoCh04G021110 vs. NCBI nr
Match: gi|113622864|dbj|BAF22809.1| (Os08g0125300 [Oryza sativa Japonica Group]) HSP 1 Score: 155.6 bits (392), Expect = 7.3e-35 Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 1
BLAST of CmoCh04G021110 vs. NCBI nr
Match: gi|218201855|gb|EEC84282.1| (hypothetical protein OsI_30754 [Oryza sativa Indica Group]) HSP 1 Score: 155.6 bits (392), Expect = 7.3e-35 Identity = 81/135 (60.00%), Postives = 98/135 (72.59%), Query Frame = 1
BLAST of CmoCh04G021110 vs. NCBI nr
Match: gi|29150404|gb|AAO72413.1| (gag-pol polyprotein [Oryza sativa Japonica Group]) HSP 1 Score: 151.8 bits (382), Expect = 1.1e-33 Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 1
BLAST of CmoCh04G021110 vs. NCBI nr
Match: gi|13940610|gb|AAK50412.1|AC021891_13 (Putative retroelement [Oryza sativa Japonica Group]) HSP 1 Score: 149.4 bits (376), Expect = 5.2e-33 Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 1
BLAST of CmoCh04G021110 vs. NCBI nr
Match: gi|110289052|gb|ABB47537.2| (retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]) HSP 1 Score: 149.4 bits (376), Expect = 5.2e-33 Identity = 72/101 (71.29%), Postives = 86/101 (85.15%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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